RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 SCAPERQ9BY12 1400 aa22.66■■□□□ 1.22
PNKP-223ENST00000629179 CDC42BPAQ5VT25 1732 aa22.65■■□□□ 1.22
PNKP-223ENST00000629179 PREX2Q70Z35 1606 aa22.64■■□□□ 1.21
PNKP-223ENST00000629179 MTUS2Q5JR59 1369 aa22.63■■□□□ 1.21
PNKP-223ENST00000629179 VPS8Q8N3P4 1428 aa22.61■■□□□ 1.21
PNKP-223ENST00000629179 POGZQ7Z3K3 1410 aa22.59■■□□□ 1.21
PNKP-223ENST00000629179 ZMYM4Q5VZL5 1548 aa22.58■■□□□ 1.21
PNKP-223ENST00000629179 ARHGEF40Q8TER5 1519 aa22.57■■□□□ 1.2
PNKP-223ENST00000629179 GPATCH8Q9UKJ3 1502 aaKnown RBP22.56■■□□□ 1.2
PNKP-223ENST00000629179 EHBP1L1Q8N3D4 1523 aa22.55■■□□□ 1.2
PNKP-223ENST00000629179 YEATS2Q9ULM3 1422 aa22.55■■□□□ 1.2
PNKP-223ENST00000629179 ZFYVE16Q7Z3T8 1539 aa22.54■■□□□ 1.2
PNKP-223ENST00000629179 AFAP1Q8N556 730 aa22.54■■□□□ 1.2
PNKP-223ENST00000629179 ZNF777Q9ULD5 760 aaPredicted RBP22.54■■□□□ 1.2
PNKP-223ENST00000629179 CCNB3Q8WWL7 1395 aa22.53■■□□□ 1.2
PNKP-223ENST00000629179 TIAM1Q13009 1591 aa22.53■■□□□ 1.2
PNKP-223ENST00000629179 MAGI2Q86UL8 1455 aa22.53■■□□□ 1.2
PNKP-223ENST00000629179 ARHGEF12Q9NZN5 1544 aa22.52■■□□□ 1.2
PNKP-223ENST00000629179 ARID4BQ4LE39 1312 aaPredicted RBP22.52■■□□□ 1.2
PNKP-223ENST00000629179 ABCC1P33527 1531 aa22.52■■□□□ 1.19
PNKP-223ENST00000629179 ZNF518AQ6AHZ1 1483 aa22.51■■□□□ 1.19
PNKP-223ENST00000629179 ITSN2Q9NZM3 1697 aa22.51■■□□□ 1.19
PNKP-223ENST00000629179 CFDP1Q9UEE9 299 aaPredicted RBP22.5■■□□□ 1.19
PNKP-223ENST00000629179 SAMD9LQ8IVG5 1584 aa22.49■■□□□ 1.19
PNKP-223ENST00000629179 TRAPPC8Q9Y2L5 1435 aa22.48■■□□□ 1.19
PNKP-223ENST00000629179 KDM5CP41229 1560 aa22.48■■□□□ 1.19
PNKP-223ENST00000629179 MYT1LQ9UL68 1186 aa22.47■■□□□ 1.19
PNKP-223ENST00000629179 BCORL1Q5H9F3 1711 aa22.47■■□□□ 1.19
PNKP-223ENST00000629179 SUPT6HQ7KZ85 1726 aaKnown RBP22.47■■□□□ 1.19
PNKP-223ENST00000629179 SIGLEC1Q9BZZ2 1709 aa22.47■■□□□ 1.19
PNKP-223ENST00000629179 ADAMTSL3P82987 1691 aa22.46■■□□□ 1.19
PNKP-223ENST00000629179 HNRNPMP52272 730 aaKnown RBP eCLIP22.45■■□□□ 1.18
PNKP-223ENST00000629179 NCOA2Q15596 1464 aa22.44■■□□□ 1.18
PNKP-223ENST00000629179 HECW2Q9P2P5 1572 aa22.43■■□□□ 1.18
PNKP-223ENST00000629179 SYCP2Q9BX26 1530 aa22.43■■□□□ 1.18
PNKP-223ENST00000629179 ATP10AO60312 1499 aa22.43■■□□□ 1.18
PNKP-223ENST00000629179 LRRC9Q6ZRR7 1453 aa22.43■■□□□ 1.18
PNKP-223ENST00000629179 KANK4Q5T7N3 995 aaPredicted RBP22.43■■□□□ 1.18
PNKP-223ENST00000629179 MAP3K1Q13233 1512 aa22.41■■□□□ 1.18
PNKP-223ENST00000629179 ZNF644Q9H582 1327 aaPredicted RBP22.41■■□□□ 1.18
PNKP-223ENST00000629179 MLH3Q9UHC1 1453 aa22.41■■□□□ 1.18
PNKP-223ENST00000629179 PLEKHH2Q8IVE3 1493 aa22.39■■□□□ 1.17
PNKP-223ENST00000629179 C9orf84Q5VXU9 1444 aa22.39■■□□□ 1.17
PNKP-223ENST00000629179 KIAA1107Q9UPP5 1409 aa22.39■■□□□ 1.17
PNKP-223ENST00000629179 DIP2CQ9Y2E4 1556 aa22.38■■□□□ 1.17
PNKP-223ENST00000629179 KIDINS220Q9ULH0 1771 aa22.38■■□□□ 1.17
PNKP-223ENST00000629179 ABCA6Q8N139 1617 aa22.38■■□□□ 1.17
PNKP-223ENST00000629179 MADDQ8WXG6 1647 aa22.38■■□□□ 1.17
PNKP-223ENST00000629179 MLECQ14165 292 aa22.37■■□□□ 1.17
PNKP-223ENST00000629179 APLP2Q06481 763 aa22.36■■□□□ 1.17
PNKP-223ENST00000629179 PTPRMP28827 1452 aa22.34■■□□□ 1.17
PNKP-223ENST00000629179 SPAG9O60271 1321 aaKnown RBP22.33■■□□□ 1.17
PNKP-223ENST00000629179 RIMS1Q86UR5 1692 aaKnown RBP22.33■■□□□ 1.17
PNKP-223ENST00000629179 MBD5Q9P267 1494 aa22.3■■□□□ 1.16
PNKP-223ENST00000629179 REREQ9P2R6 1566 aa22.29■■□□□ 1.16
PNKP-223ENST00000629179 CAMSAP2Q08AD1 1489 aa22.29■■□□□ 1.16
PNKP-223ENST00000629179 FER1L4A9Z1Z3 1794 aa22.29■■□□□ 1.16
PNKP-223ENST00000629179 ATP7AQ04656 1500 aa22.28■■□□□ 1.16
PNKP-223ENST00000629179 INO80Q9ULG1 1556 aaPredicted RBP22.27■■□□□ 1.16
PNKP-223ENST00000629179 PLPPR3Q6T4P5 718 aa22.25■■□□□ 1.15
PNKP-223ENST00000629179 MYOM3Q5VTT5 1437 aa22.23■■□□□ 1.15
PNKP-223ENST00000629179 AGLP35573 1532 aa22.23■■□□□ 1.15
PNKP-223ENST00000629179 CCDC141Q6ZP82 1450 aa22.21■■□□□ 1.15
PNKP-223ENST00000629179 RSPH4AQ5TD94 716 aa22.2■■□□□ 1.14
PNKP-223ENST00000629179 MIA2Q96PC5 1412 aa22.19■■□□□ 1.14
PNKP-223ENST00000629179 ADGBQ8N7X0 1667 aa22.18■■□□□ 1.14
PNKP-223ENST00000629179 ARHGEF5Q12774 1597 aa22.18■■□□□ 1.14
PNKP-223ENST00000629179 A2MP01023 1474 aa22.18■■□□□ 1.14
PNKP-223ENST00000629179 RTEL1-TNFRSF6BF6WH68 1400 aa22.18■■□□□ 1.14
PNKP-223ENST00000629179 CEBPAP49715 358 aaPredicted RBP22.15■■□□□ 1.14
PNKP-223ENST00000629179 PLXNC1O60486 1568 aa22.15■■□□□ 1.14
PNKP-223ENST00000629179 TSPY4P0CV99 314 aa22.14■■□□□ 1.13
PNKP-223ENST00000629179 TSPY10P0CW01 314 aa22.14■■□□□ 1.13
PNKP-223ENST00000629179 ESF1Q9H501 851 aaKnown RBP22.12■■□□□ 1.13
PNKP-223ENST00000629179 PTPN23Q9H3S7 1636 aa22.12■■□□□ 1.13
PNKP-223ENST00000629179 DHX29Q7Z478 1369 aaKnown RBP22.1■■□□□ 1.13
PNKP-223ENST00000629179 SETD1BQ9UPS6 1966 aaKnown RBP22.09■■□□□ 1.13
PNKP-223ENST00000629179 FGD6Q6ZV73 1430 aa22.09■■□□□ 1.13
PNKP-223ENST00000629179 GGT6Q6P531 493 aa22.09■■□□□ 1.13
PNKP-223ENST00000629179 C3P01024 1663 aa22.07■■□□□ 1.12
PNKP-223ENST00000629179 LMTK3Q96Q04 1460 aa22.06■■□□□ 1.12
PNKP-223ENST00000629179 MAST1Q9Y2H9 1570 aa22.06■■□□□ 1.12
PNKP-223ENST00000629179 CNTLNQ9NXG0 1405 aa22.05■■□□□ 1.12
PNKP-223ENST00000629179 KIF3BO15066 747 aa22.04■■□□□ 1.12
PNKP-223ENST00000629179 CLTCQ00610 1675 aaKnown RBP22.04■■□□□ 1.12
PNKP-223ENST00000629179 TCOF1Q13428 1488 aaKnown RBP22.03■■□□□ 1.12
PNKP-223ENST00000629179 PPARGC1BQ86YN6 1023 aaKnown RBP22.02■■□□□ 1.12
PNKP-223ENST00000629179 ABCC5O15440 1437 aa22.02■■□□□ 1.12
PNKP-223ENST00000629179 MROH2AA6NES4 1674 aa22.01■■□□□ 1.11
PNKP-223ENST00000629179 CROCC2H7BZ55 1655 aa22.01■■□□□ 1.11
PNKP-223ENST00000629179 DNMT1P26358 1616 aaKnown RBP22■■□□□ 1.11
PNKP-223ENST00000629179 HSPA2P54652 639 aa22■■□□□ 1.11
PNKP-223ENST00000629179 PREX1Q8TCU6 1659 aa22■■□□□ 1.11
PNKP-223ENST00000629179 ZMYM3Q14202 1370 aa21.99■■□□□ 1.11
PNKP-223ENST00000629179 DAPK1P53355 1430 aa21.98■■□□□ 1.11
PNKP-223ENST00000629179 PPP6R1Q9UPN7 881 aa21.98■■□□□ 1.11
PNKP-223ENST00000629179 FAM50AQ14320 339 aaKnown RBP21.97■■□□□ 1.11
PNKP-223ENST00000629179 SHANK2Q9UPX8 1470 aa21.96■■□□□ 1.11
PNKP-223ENST00000629179 CHIC2Q9UKJ5 165 aa21.95■■□□□ 1.1
PNKP-223ENST00000629179 RRP7BPQ9NSQ0 103 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms