RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ZMYM4Q5VZL5 1548 aa20.14■□□□□ 0.81
PNKP-217ENST00000625216 RICTORQ6R327 1708 aa20.13■□□□□ 0.81
PNKP-217ENST00000625216 MYO5CQ9NQX4 1742 aa20.13■□□□□ 0.81
PNKP-217ENST00000625216 ARHGAP5Q13017 1502 aa20.12■□□□□ 0.81
PNKP-217ENST00000625216 ARHGEF40Q8TER5 1519 aa20.1■□□□□ 0.81
PNKP-217ENST00000625216 ZFYVE16Q7Z3T8 1539 aa20.08■□□□□ 0.81
PNKP-217ENST00000625216 ZNF518AQ6AHZ1 1483 aa20.08■□□□□ 0.81
PNKP-217ENST00000625216 AFAP1Q8N556 730 aa20.08■□□□□ 0.81
PNKP-217ENST00000625216 YEATS2Q9ULM3 1422 aa20.08■□□□□ 0.8
PNKP-217ENST00000625216 MTUS2Q5JR59 1369 aa20.08■□□□□ 0.8
PNKP-217ENST00000625216 ATP10AO60312 1499 aa20.05■□□□□ 0.8
PNKP-217ENST00000625216 ADAMTSL3P82987 1691 aa20.03■□□□□ 0.8
PNKP-217ENST00000625216 GPATCH8Q9UKJ3 1502 aaKnown RBP20.02■□□□□ 0.8
PNKP-217ENST00000625216 PREX2Q70Z35 1606 aa20.02■□□□□ 0.8
PNKP-217ENST00000625216 CFDP1Q9UEE9 299 aaPredicted RBP20.02■□□□□ 0.8
PNKP-217ENST00000625216 MYT1LQ9UL68 1186 aa20.02■□□□□ 0.8
PNKP-217ENST00000625216 PTPRMP28827 1452 aa20.02■□□□□ 0.8
PNKP-217ENST00000625216 CCNB3Q8WWL7 1395 aa20.01■□□□□ 0.79
PNKP-217ENST00000625216 ZNF777Q9ULD5 760 aaPredicted RBP20.01■□□□□ 0.79
PNKP-217ENST00000625216 BCORL1Q5H9F3 1711 aa20.01■□□□□ 0.79
PNKP-217ENST00000625216 CDC42BPBQ9Y5S2 1711 aa20.01■□□□□ 0.79
PNKP-217ENST00000625216 C9orf84Q5VXU9 1444 aa20■□□□□ 0.79
PNKP-217ENST00000625216 KDM5CP41229 1560 aa20■□□□□ 0.79
PNKP-217ENST00000625216 MLH3Q9UHC1 1453 aa19.99■□□□□ 0.79
PNKP-217ENST00000625216 TRAPPC8Q9Y2L5 1435 aa19.99■□□□□ 0.79
PNKP-217ENST00000625216 ABCC1P33527 1531 aa19.97■□□□□ 0.79
PNKP-217ENST00000625216 ARHGEF12Q9NZN5 1544 aa19.97■□□□□ 0.79
PNKP-217ENST00000625216 KIAA1107Q9UPP5 1409 aa19.96■□□□□ 0.79
PNKP-217ENST00000625216 PLEKHH2Q8IVE3 1493 aa19.96■□□□□ 0.79
PNKP-217ENST00000625216 VPS8Q8N3P4 1428 aa19.95■□□□□ 0.78
PNKP-217ENST00000625216 MLECQ14165 292 aa19.95■□□□□ 0.78
PNKP-217ENST00000625216 CDC42BPAQ5VT25 1732 aa19.95■□□□□ 0.78
PNKP-217ENST00000625216 EHBP1L1Q8N3D4 1523 aa19.95■□□□□ 0.78
PNKP-217ENST00000625216 HNRNPMP52272 730 aaKnown RBP eCLIP19.94■□□□□ 0.78
PNKP-217ENST00000625216 HECW2Q9P2P5 1572 aa19.92■□□□□ 0.78
PNKP-217ENST00000625216 MADDQ8WXG6 1647 aa19.92■□□□□ 0.78
PNKP-217ENST00000625216 SPAG9O60271 1321 aaKnown RBP19.91■□□□□ 0.78
PNKP-217ENST00000625216 SAMD9LQ8IVG5 1584 aa19.89■□□□□ 0.77
PNKP-217ENST00000625216 REREQ9P2R6 1566 aa19.89■□□□□ 0.77
PNKP-217ENST00000625216 ITSN2Q9NZM3 1697 aa19.88■□□□□ 0.77
PNKP-217ENST00000625216 DIP2CQ9Y2E4 1556 aa19.87■□□□□ 0.77
PNKP-217ENST00000625216 SIGLEC1Q9BZZ2 1709 aa19.87■□□□□ 0.77
PNKP-217ENST00000625216 SYCP2Q9BX26 1530 aa19.86■□□□□ 0.77
PNKP-217ENST00000625216 AGLP35573 1532 aa19.86■□□□□ 0.77
PNKP-217ENST00000625216 ZNF644Q9H582 1327 aaPredicted RBP19.85■□□□□ 0.77
PNKP-217ENST00000625216 RSPH4AQ5TD94 716 aa19.85■□□□□ 0.77
PNKP-217ENST00000625216 TIAM1Q13009 1591 aa19.85■□□□□ 0.77
PNKP-217ENST00000625216 NCOA2Q15596 1464 aa19.85■□□□□ 0.77
PNKP-217ENST00000625216 MAP3K1Q13233 1512 aa19.84■□□□□ 0.77
PNKP-217ENST00000625216 RIMS1Q86UR5 1692 aaKnown RBP19.84■□□□□ 0.77
PNKP-217ENST00000625216 LRRC9Q6ZRR7 1453 aa19.82■□□□□ 0.76
PNKP-217ENST00000625216 ESF1Q9H501 851 aaKnown RBP19.82■□□□□ 0.76
PNKP-217ENST00000625216 ABCA6Q8N139 1617 aa19.82■□□□□ 0.76
PNKP-217ENST00000625216 KIDINS220Q9ULH0 1771 aa19.81■□□□□ 0.76
PNKP-217ENST00000625216 PLPPR3Q6T4P5 718 aa19.81■□□□□ 0.76
PNKP-217ENST00000625216 MBD5Q9P267 1494 aa19.8■□□□□ 0.76
PNKP-217ENST00000625216 SUPT6HQ7KZ85 1726 aaKnown RBP19.8■□□□□ 0.76
PNKP-217ENST00000625216 APLP2Q06481 763 aa19.8■□□□□ 0.76
PNKP-217ENST00000625216 RTEL1-TNFRSF6BF6WH68 1400 aa19.78■□□□□ 0.76
PNKP-217ENST00000625216 KANK4Q5T7N3 995 aaPredicted RBP19.78■□□□□ 0.76
PNKP-217ENST00000625216 ATP7AQ04656 1500 aa19.77■□□□□ 0.76
PNKP-217ENST00000625216 LMTK3Q96Q04 1460 aa19.77■□□□□ 0.76
PNKP-217ENST00000625216 FER1L4A9Z1Z3 1794 aa19.77■□□□□ 0.76
PNKP-217ENST00000625216 CEBPAP49715 358 aaPredicted RBP19.76■□□□□ 0.75
PNKP-217ENST00000625216 A2MP01023 1474 aa19.75■□□□□ 0.75
PNKP-217ENST00000625216 CNTLNQ9NXG0 1405 aa19.75■□□□□ 0.75
PNKP-217ENST00000625216 PPP6R1Q9UPN7 881 aa19.74■□□□□ 0.75
PNKP-217ENST00000625216 TSPY4P0CV99 314 aa19.73■□□□□ 0.75
PNKP-217ENST00000625216 TSPY10P0CW01 314 aa19.73■□□□□ 0.75
PNKP-217ENST00000625216 INO80Q9ULG1 1556 aaPredicted RBP19.73■□□□□ 0.75
PNKP-217ENST00000625216 CAMSAP2Q08AD1 1489 aa19.72■□□□□ 0.75
PNKP-217ENST00000625216 CCDC141Q6ZP82 1450 aa19.72■□□□□ 0.75
PNKP-217ENST00000625216 MIA2Q96PC5 1412 aa19.7■□□□□ 0.74
PNKP-217ENST00000625216 DHX29Q7Z478 1369 aaKnown RBP19.7■□□□□ 0.74
PNKP-217ENST00000625216 HSPA2P54652 639 aa19.69■□□□□ 0.74
PNKP-217ENST00000625216 GGT6Q6P531 493 aa19.68■□□□□ 0.74
PNKP-217ENST00000625216 PLXNC1O60486 1568 aa19.68■□□□□ 0.74
PNKP-217ENST00000625216 MYOM3Q5VTT5 1437 aa19.68■□□□□ 0.74
PNKP-217ENST00000625216 ZMYM3Q14202 1370 aa19.66■□□□□ 0.74
PNKP-217ENST00000625216 ARHGEF5Q12774 1597 aa19.66■□□□□ 0.74
PNKP-217ENST00000625216 UHRF1BP1Q6BDS2 1440 aa19.65■□□□□ 0.74
PNKP-217ENST00000625216 SETD1BQ9UPS6 1966 aaKnown RBP19.63■□□□□ 0.73
PNKP-217ENST00000625216 ADGBQ8N7X0 1667 aa19.63■□□□□ 0.73
PNKP-217ENST00000625216 NPATQ14207 1427 aa19.62■□□□□ 0.73
PNKP-217ENST00000625216 KIF3BO15066 747 aa19.62■□□□□ 0.73
PNKP-217ENST00000625216 PREX1Q8TCU6 1659 aa19.59■□□□□ 0.73
PNKP-217ENST00000625216 DMRT2Q9Y5R5 561 aa19.59■□□□□ 0.73
PNKP-217ENST00000625216 C3P01024 1663 aa19.59■□□□□ 0.73
PNKP-217ENST00000625216 MROH2AA6NES4 1674 aa19.57■□□□□ 0.72
PNKP-217ENST00000625216 ILDR1Q86SU0 546 aaPredicted RBP19.56■□□□□ 0.72
PNKP-217ENST00000625216 MAST1Q9Y2H9 1570 aa19.55■□□□□ 0.72
PNKP-217ENST00000625216 WASHC2CQ9Y4E1 1318 aa19.53■□□□□ 0.72
PNKP-217ENST00000625216 PTPRKQ15262 1439 aa19.53■□□□□ 0.72
PNKP-217ENST00000625216 FGD6Q6ZV73 1430 aa19.52■□□□□ 0.72
PNKP-217ENST00000625216 FAM135AQ9P2D6 1515 aa19.52■□□□□ 0.72
PNKP-217ENST00000625216 ABCC5O15440 1437 aa19.51■□□□□ 0.71
PNKP-217ENST00000625216 CLTCQ00610 1675 aaKnown RBP19.5■□□□□ 0.71
PNKP-217ENST00000625216 TCOF1Q13428 1488 aaKnown RBP19.49■□□□□ 0.71
PNKP-217ENST00000625216 SHANK2Q9UPX8 1470 aa19.48■□□□□ 0.71
PNKP-217ENST00000625216 PTPN23Q9H3S7 1636 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms