RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 NBR1Q14596 966 aa19.26■□□□□ 0.67
LDB3-209ENST00000623056 RRP7BPQ9NSQ0 103 aa19.24■□□□□ 0.67
LDB3-209ENST00000623056 SUPT6HQ7KZ85 1726 aaKnown RBP19.24■□□□□ 0.67
LDB3-209ENST00000623056 GRIN2BQ13224 1484 aa19.22■□□□□ 0.67
LDB3-209ENST00000623056 GCC2Q8IWJ2 1684 aa19.22■□□□□ 0.67
LDB3-209ENST00000623056 ADAMTS12P58397 1594 aa19.21■□□□□ 0.67
LDB3-209ENST00000623056 L3MBTL2Q969R5 705 aa19.2■□□□□ 0.66
LDB3-209ENST00000623056 EHBP1L1Q8N3D4 1523 aa19.2■□□□□ 0.66
LDB3-209ENST00000623056 SMG6Q86US8 1419 aaKnown RBP19.18■□□□□ 0.66
LDB3-209ENST00000623056 UGGT2Q9NYU1 1516 aa19.18■□□□□ 0.66
LDB3-209ENST00000623056 CHIC2Q9UKJ5 165 aa19.18■□□□□ 0.66
LDB3-209ENST00000623056 EIF4G3O43432 1585 aaKnown RBP19.18■□□□□ 0.66
LDB3-209ENST00000623056 KDM6BO15054 1643 aa19.18■□□□□ 0.66
LDB3-209ENST00000623056 AKNAQ7Z591 1439 aa19.18■□□□□ 0.66
LDB3-209ENST00000623056 SAMD9Q5K651 1589 aa19.17■□□□□ 0.66
LDB3-209ENST00000623056 MPHOSPH9Q99550 1183 aa19.16■□□□□ 0.66
LDB3-209ENST00000623056 ARHGEF11O15085 1522 aa19.16■□□□□ 0.66
LDB3-209ENST00000623056 IPO9Q96P70 1041 aaKnown RBP19.16■□□□□ 0.66
LDB3-209ENST00000623056 TCOF1Q13428 1488 aaKnown RBP19.15■□□□□ 0.66
LDB3-209ENST00000623056 ANP32AP39687 249 aaKnown RBP19.15■□□□□ 0.66
LDB3-209ENST00000623056 KIF7Q2M1P5 1343 aa19.14■□□□□ 0.66
LDB3-209ENST00000623056 RNF123Q5XPI4 1314 aa19.13■□□□□ 0.65
LDB3-209ENST00000623056 CCDC136Q96JN2 1154 aa19.13■□□□□ 0.65
LDB3-209ENST00000623056 NBPF8Q3BBV2 869 aa19.12■□□□□ 0.65
LDB3-209ENST00000623056 NUDCQ9Y266 331 aa19.12■□□□□ 0.65
LDB3-209ENST00000623056 POLR1AO95602 1720 aaPredicted RBP19.12■□□□□ 0.65
LDB3-209ENST00000623056 MAGI3Q5TCQ9 1506 aa19.11■□□□□ 0.65
LDB3-209ENST00000623056 FOXD1Q16676 465 aa19.11■□□□□ 0.65
LDB3-209ENST00000623056 SPATA31E1Q6ZUB1 1445 aa19.11■□□□□ 0.65
LDB3-209ENST00000623056 RTL5Q5HYW3 569 aaPredicted RBP19.09■□□□□ 0.65
LDB3-209ENST00000623056 ZBTB47Q9UFB7 747 aaPredicted RBP19.09■□□□□ 0.65
LDB3-209ENST00000623056 RPRD2Q5VT52 1461 aaKnown RBP19.08■□□□□ 0.64
LDB3-209ENST00000623056 TEX14Q8IWB6 1497 aa19.08■□□□□ 0.64
LDB3-209ENST00000623056 IQGAP2Q13576 1575 aa19.07■□□□□ 0.64
LDB3-209ENST00000623056 PRKCSHP14314 528 aaPredicted RBP19.06■□□□□ 0.64
LDB3-209ENST00000623056 ANKRD30BQ9BXX2 1392 aa19.06■□□□□ 0.64
LDB3-209ENST00000623056 DHX29Q7Z478 1369 aaKnown RBP19.04■□□□□ 0.64
LDB3-209ENST00000623056 GRIN2AQ12879 1464 aa19.02■□□□□ 0.64
LDB3-209ENST00000623056 FBLN2P98095 1184 aa19.02■□□□□ 0.64
LDB3-209ENST00000623056 MIA2Q96PC5 1412 aa18.99■□□□□ 0.63
LDB3-209ENST00000623056 CNGB1Q14028 1251 aaPredicted RBP18.99■□□□□ 0.63
LDB3-209ENST00000623056 CHMP7Q8WUX9 453 aaPredicted RBP18.99■□□□□ 0.63
LDB3-209ENST00000623056 MAGI1Q96QZ7 1491 aaPredicted RBP18.98■□□□□ 0.63
LDB3-209ENST00000623056 ANO8Q9HCE9 1232 aaPredicted RBP18.96■□□□□ 0.63
LDB3-209ENST00000623056 SYNJ2O15056 1496 aa18.96■□□□□ 0.63
LDB3-209ENST00000623056 KIAA0586Q9BVV6 1533 aa18.95■□□□□ 0.62
LDB3-209ENST00000623056 SENP3-EIF4A1A0A087X0R7 540 aa18.95■□□□□ 0.62
LDB3-209ENST00000623056 BCORL1Q5H9F3 1711 aa18.94■□□□□ 0.62
LDB3-209ENST00000623056 PNISRQ8TF01 805 aaKnown RBP18.94■□□□□ 0.62
LDB3-209ENST00000623056 ROCK1Q13464 1354 aa18.93■□□□□ 0.62
LDB3-209ENST00000623056 EPRSP07814 1512 aaKnown RBP18.93■□□□□ 0.62
LDB3-209ENST00000623056 CEP170Q5SW79 1584 aa18.92■□□□□ 0.62
LDB3-209ENST00000623056 ARID3CA6NKF2 412 aa18.92■□□□□ 0.62
LDB3-209ENST00000623056 POLR3GLQ9BT43 218 aa18.92■□□□□ 0.62
LDB3-209ENST00000623056 SLC4A1APQ9BWU0 796 aaKnown RBP18.92■□□□□ 0.62
LDB3-209ENST00000623056 IL27Q8NEV9 243 aa18.91■□□□□ 0.62
LDB3-209ENST00000623056 DAPK1P53355 1430 aa18.91■□□□□ 0.62
LDB3-209ENST00000623056 NPM2Q86SE8 214 aaKnown RBP18.91■□□□□ 0.62
LDB3-209ENST00000623056 USP47Q96K76 1375 aa18.91■□□□□ 0.62
LDB3-209ENST00000623056 DISP1Q96F81 1524 aa18.89■□□□□ 0.62
LDB3-209ENST00000623056 MBD5Q9P267 1494 aa18.89■□□□□ 0.61
LDB3-209ENST00000623056 CDK13Q14004 1512 aaKnown RBP18.89■□□□□ 0.61
LDB3-209ENST00000623056 SALL2Q9Y467 1007 aaPredicted RBP18.89■□□□□ 0.61
LDB3-209ENST00000623056 TCERG1O14776 1098 aaKnown RBP18.88■□□□□ 0.61
LDB3-209ENST00000623056 TMC1Q8TDI8 760 aa18.88■□□□□ 0.61
LDB3-209ENST00000623056 KIAA0556O60303 1618 aa18.88■□□□□ 0.61
LDB3-209ENST00000623056 RRP1P56182 461 aaKnown RBP18.87■□□□□ 0.61
LDB3-209ENST00000623056 ABCC5O15440 1437 aa18.87■□□□□ 0.61
LDB3-209ENST00000623056 ARID4BQ4LE39 1312 aaPredicted RBP18.87■□□□□ 0.61
LDB3-209ENST00000623056 EXOC6Q8TAG9 804 aa18.86■□□□□ 0.61
LDB3-209ENST00000623056 DNMT1P26358 1616 aaKnown RBP18.86■□□□□ 0.61
LDB3-209ENST00000623056 LAS1LQ9Y4W2 734 aaKnown RBP18.85■□□□□ 0.61
LDB3-209ENST00000623056 LRPPRCP42704 1394 aaKnown RBP18.85■□□□□ 0.61
LDB3-209ENST00000623056 NEFMP07197 916 aa18.85■□□□□ 0.61
LDB3-209ENST00000623056 PDE4AP27815 886 aa18.85■□□□□ 0.61
LDB3-209ENST00000623056 USP35Q9P2H5 1018 aa18.85■□□□□ 0.61
LDB3-209ENST00000623056 KDM5CP41229 1560 aa18.84■□□□□ 0.61
LDB3-209ENST00000623056 PZPP20742 1482 aa18.83■□□□□ 0.61
LDB3-209ENST00000623056 KIF14Q15058 1648 aa18.83■□□□□ 0.6
LDB3-209ENST00000623056 NUP160Q12769 1436 aa18.83■□□□□ 0.6
LDB3-209ENST00000623056 ZNF326Q5BKZ1 582 aaKnown RBP18.82■□□□□ 0.6
LDB3-209ENST00000623056 BACH2Q9BYV9 841 aa18.82■□□□□ 0.6
LDB3-209ENST00000623056 ROCK2O75116 1388 aaKnown RBP18.82■□□□□ 0.6
LDB3-209ENST00000623056 RTN4Q9NQC3 1192 aaKnown RBP18.81■□□□□ 0.6
LDB3-209ENST00000623056 KIF15Q9NS87 1388 aa18.8■□□□□ 0.6
LDB3-209ENST00000623056 MS4A1P11836 297 aa18.8■□□□□ 0.6
LDB3-209ENST00000623056 ZNF644Q9H582 1327 aaPredicted RBP18.8■□□□□ 0.6
LDB3-209ENST00000623056 BRD4O60885 1362 aaPredicted RBP18.79■□□□□ 0.6
LDB3-209ENST00000623056 RCAN3Q9UKA8 241 aa18.79■□□□□ 0.6
LDB3-209ENST00000623056 JPH4Q96JJ6 628 aa18.78■□□□□ 0.6
LDB3-209ENST00000623056 WASHC2CQ9Y4E1 1318 aa18.78■□□□□ 0.6
LDB3-209ENST00000623056 PPM1GO15355 546 aaPredicted RBP18.77■□□□□ 0.6
LDB3-209ENST00000623056 MYBBP1AQ9BQG0 1328 aaKnown RBP18.77■□□□□ 0.6
LDB3-209ENST00000623056 KIAA1107Q9UPP5 1409 aa18.77■□□□□ 0.59
LDB3-209ENST00000623056 NUP153P49790 1475 aaKnown RBP18.74■□□□□ 0.59
LDB3-209ENST00000623056 KTN1Q86UP2 1357 aaKnown RBP18.74■□□□□ 0.59
LDB3-209ENST00000623056 RALBP1Q15311 655 aa18.73■□□□□ 0.59
LDB3-209ENST00000623056 RALGAPBQ86X10 1494 aa18.73■□□□□ 0.59
LDB3-209ENST00000623056 RAPGEF6Q8TEU7 1601 aa18.73■□□□□ 0.59
LDB3-209ENST00000623056 PLB1Q6P1J6 1458 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms