RNA–Protein interactions for RNA: ENST00000622209.4

PMPCA-212, Transcript of peptidase, mitochondrial processing alpha subunit, humanhuman

TSL 1 (best)

Gene PMPCA, Length 1,013 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMPCA-212ENST00000622209 CLIP1P30622 1438 aa34■■■■□ 3.03
PMPCA-212ENST00000622209 KIF14Q15058 1648 aa33.99■■■■□ 3.03
PMPCA-212ENST00000622209 MADDQ8WXG6 1647 aa33.98■■■■□ 3.03
PMPCA-212ENST00000622209 MLECQ14165 292 aa33.98■■■■□ 3.03
PMPCA-212ENST00000622209 MAGI2Q86UL8 1455 aa33.98■■■■□ 3.03
PMPCA-212ENST00000622209 PLPPR3Q6T4P5 718 aa33.97■■■■□ 3.03
PMPCA-212ENST00000622209 CASKIN1Q8WXD9 1431 aa33.96■■■■□ 3.03
PMPCA-212ENST00000622209 AFAP1Q8N556 730 aa33.92■■■■□ 3.02
PMPCA-212ENST00000622209 ARHGAP5Q13017 1502 aa33.91■■■■□ 3.02
PMPCA-212ENST00000622209 MYO5CQ9NQX4 1742 aa33.9■■■■□ 3.02
PMPCA-212ENST00000622209 LOC105371045A0A1W2PR82 267 aa33.9■■■■□ 3.02
PMPCA-212ENST00000622209 LRRIQ1Q96JM4 1722 aa33.88■■■■□ 3.01
PMPCA-212ENST00000622209 MYT1LQ9UL68 1186 aa33.88■■■■□ 3.01
PMPCA-212ENST00000622209 PCF11O94913 1555 aaKnown RBP33.88■■■■□ 3.01
PMPCA-212ENST00000622209 ATP10AO60312 1499 aa33.86■■■■□ 3.01
PMPCA-212ENST00000622209 CCDC18Q5T9S5 1454 aa33.86■■■■□ 3.01
PMPCA-212ENST00000622209 RIMS1Q86UR5 1692 aaKnown RBP33.84■■■■□ 3.01
PMPCA-212ENST00000622209 SIGLEC1Q9BZZ2 1709 aa33.84■■■■□ 3.01
PMPCA-212ENST00000622209 ZNF518AQ6AHZ1 1483 aa33.82■■■■□ 3
PMPCA-212ENST00000622209 C9orf84Q5VXU9 1444 aa33.79■■■■□ 3
PMPCA-212ENST00000622209 FYCO1Q9BQS8 1478 aa33.77■■■■□ 3
PMPCA-212ENST00000622209 CEP162Q5TB80 1403 aa33.77■■■■□ 3
PMPCA-212ENST00000622209 LMTK3Q96Q04 1460 aa33.76■■■□□ 2.99
PMPCA-212ENST00000622209 HSPA2P54652 639 aa33.74■■■□□ 2.99
PMPCA-212ENST00000622209 ZNF777Q9ULD5 760 aaPredicted RBP33.72■■■□□ 2.99
PMPCA-212ENST00000622209 TRAPPC8Q9Y2L5 1435 aa33.71■■■□□ 2.99
PMPCA-212ENST00000622209 CDC42BPBQ9Y5S2 1711 aa33.7■■■□□ 2.98
PMPCA-212ENST00000622209 ARHGEF12Q9NZN5 1544 aa33.69■■■□□ 2.98
PMPCA-212ENST00000622209 KDM5CP41229 1560 aa33.69■■■□□ 2.98
PMPCA-212ENST00000622209 CEBPAP49715 358 aaPredicted RBP33.67■■■□□ 2.98
PMPCA-212ENST00000622209 PREX2Q70Z35 1606 aa33.66■■■□□ 2.98
PMPCA-212ENST00000622209 MLH3Q9UHC1 1453 aa33.63■■■□□ 2.97
PMPCA-212ENST00000622209 ABCC1P33527 1531 aa33.63■■■□□ 2.97
PMPCA-212ENST00000622209 FER1L4A9Z1Z3 1794 aa33.6■■■□□ 2.97
PMPCA-212ENST00000622209 DIP2CQ9Y2E4 1556 aa33.6■■■□□ 2.97
PMPCA-212ENST00000622209 GPATCH8Q9UKJ3 1502 aaKnown RBP33.58■■■□□ 2.97
PMPCA-212ENST00000622209 HNRNPMP52272 730 aaKnown RBP eCLIP33.58■■■□□ 2.97
PMPCA-212ENST00000622209 CFDP1Q9UEE9 299 aaPredicted RBP33.56■■■□□ 2.96
PMPCA-212ENST00000622209 MTUS2Q5JR59 1369 aa33.55■■■□□ 2.96
PMPCA-212ENST00000622209 CDC42BPAQ5VT25 1732 aa33.54■■■□□ 2.96
PMPCA-212ENST00000622209 ABCA6Q8N139 1617 aa33.53■■■□□ 2.96
PMPCA-212ENST00000622209 CCNB3Q8WWL7 1395 aa33.53■■■□□ 2.96
PMPCA-212ENST00000622209 ITSN2Q9NZM3 1697 aa33.52■■■□□ 2.96
PMPCA-212ENST00000622209 FBXO41Q8TF61 875 aa33.51■■■□□ 2.95
PMPCA-212ENST00000622209 ESF1Q9H501 851 aaKnown RBP33.51■■■□□ 2.95
PMPCA-212ENST00000622209 SPAG9O60271 1321 aaKnown RBP33.5■■■□□ 2.95
PMPCA-212ENST00000622209 REREQ9P2R6 1566 aa33.49■■■□□ 2.95
PMPCA-212ENST00000622209 SAMD9LQ8IVG5 1584 aa33.47■■■□□ 2.95
PMPCA-212ENST00000622209 SYCP2Q9BX26 1530 aa33.46■■■□□ 2.95
PMPCA-212ENST00000622209 AGLP35573 1532 aa33.44■■■□□ 2.94
PMPCA-212ENST00000622209 KIDINS220Q9ULH0 1771 aa33.42■■■□□ 2.94
PMPCA-212ENST00000622209 KIAA1107Q9UPP5 1409 aa33.41■■■□□ 2.94
PMPCA-212ENST00000622209 ZNF644Q9H582 1327 aaPredicted RBP33.4■■■□□ 2.94
PMPCA-212ENST00000622209 PLEKHH2Q8IVE3 1493 aa33.38■■■□□ 2.93
PMPCA-212ENST00000622209 VPS8Q8N3P4 1428 aa33.37■■■□□ 2.93
PMPCA-212ENST00000622209 UHRF1BP1Q6BDS2 1440 aa33.36■■■□□ 2.93
PMPCA-212ENST00000622209 PREX1Q8TCU6 1659 aa33.32■■■□□ 2.92
PMPCA-212ENST00000622209 EHBP1L1Q8N3D4 1523 aa33.3■■■□□ 2.92
PMPCA-212ENST00000622209 CNTLNQ9NXG0 1405 aa33.29■■■□□ 2.92
PMPCA-212ENST00000622209 ATP7AQ04656 1500 aa33.29■■■□□ 2.92
PMPCA-212ENST00000622209 TIAM1Q13009 1591 aa33.28■■■□□ 2.92
PMPCA-212ENST00000622209 CERKQ8TCT0 537 aa33.26■■■□□ 2.91
PMPCA-212ENST00000622209 A2MP01023 1474 aa33.25■■■□□ 2.91
PMPCA-212ENST00000622209 GGT6Q6P531 493 aa33.25■■■□□ 2.91
PMPCA-212ENST00000622209 DMRT2Q9Y5R5 561 aa33.25■■■□□ 2.91
PMPCA-212ENST00000622209 C3P01024 1663 aa33.25■■■□□ 2.91
PMPCA-212ENST00000622209 ZMYM3Q14202 1370 aa33.23■■■□□ 2.91
PMPCA-212ENST00000622209 MBD5Q9P267 1494 aa33.22■■■□□ 2.91
PMPCA-212ENST00000622209 INO80Q9ULG1 1556 aaPredicted RBP33.21■■■□□ 2.91
PMPCA-212ENST00000622209 SUPT6HQ7KZ85 1726 aaKnown RBP33.2■■■□□ 2.91
PMPCA-212ENST00000622209 SETD1BQ9UPS6 1966 aaKnown RBP33.19■■■□□ 2.9
PMPCA-212ENST00000622209 NCOA2Q15596 1464 aa33.18■■■□□ 2.9
PMPCA-212ENST00000622209 PLXNC1O60486 1568 aa33.14■■■□□ 2.9
PMPCA-212ENST00000622209 RTEL1-TNFRSF6BF6WH68 1400 aa33.11■■■□□ 2.89
PMPCA-212ENST00000622209 NPATQ14207 1427 aa33.11■■■□□ 2.89
PMPCA-212ENST00000622209 STRCQ7RTU9 1775 aa33.11■■■□□ 2.89
PMPCA-212ENST00000622209 MAP3K1Q13233 1512 aa33.11■■■□□ 2.89
PMPCA-212ENST00000622209 DHX29Q7Z478 1369 aaKnown RBP33.09■■■□□ 2.89
PMPCA-212ENST00000622209 PPP6R1Q9UPN7 881 aa33.08■■■□□ 2.89
PMPCA-212ENST00000622209 CAMSAP2Q08AD1 1489 aa33.07■■■□□ 2.88
PMPCA-212ENST00000622209 RSPH4AQ5TD94 716 aa33.07■■■□□ 2.88
PMPCA-212ENST00000622209 MROH2AA6NES4 1674 aa33.05■■■□□ 2.88
PMPCA-212ENST00000622209 CCDC141Q6ZP82 1450 aa33.05■■■□□ 2.88
PMPCA-212ENST00000622209 PTPRTO14522 1441 aa33.04■■■□□ 2.88
PMPCA-212ENST00000622209 KIF3BO15066 747 aa33.04■■■□□ 2.88
PMPCA-212ENST00000622209 CLTCQ00610 1675 aaKnown RBP33.04■■■□□ 2.88
PMPCA-212ENST00000622209 APLP2Q06481 763 aa33.03■■■□□ 2.88
PMPCA-212ENST00000622209 KANK4Q5T7N3 995 aaPredicted RBP33.03■■■□□ 2.88
PMPCA-212ENST00000622209 LRRC9Q6ZRR7 1453 aa33.03■■■□□ 2.88
PMPCA-212ENST00000622209 ADGBQ8N7X0 1667 aa33.02■■■□□ 2.88
PMPCA-212ENST00000622209 PTPRKQ15262 1439 aa33.02■■■□□ 2.88
PMPCA-212ENST00000622209 NCOA1Q15788 1441 aa33.02■■■□□ 2.88
PMPCA-212ENST00000622209 TSPY4P0CV99 314 aa33.01■■■□□ 2.87
PMPCA-212ENST00000622209 TSPY10P0CW01 314 aa33.01■■■□□ 2.87
PMPCA-212ENST00000622209 NCKAP5LQ9HCH0 1330 aa32.99■■■□□ 2.87
PMPCA-212ENST00000622209 CAMSAP1Q5T5Y3 1602 aa32.95■■■□□ 2.87
PMPCA-212ENST00000622209 FBXO31Q5XUX0 539 aaPredicted RBP32.91■■■□□ 2.86
PMPCA-212ENST00000622209 WASHC2CQ9Y4E1 1318 aa32.91■■■□□ 2.86
PMPCA-212ENST00000622209 ARHGEF5Q12774 1597 aa32.87■■■□□ 2.85
PMPCA-212ENST00000622209 MYO3AQ8NEV4 1616 aa32.85■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms