RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 LTBP4Q8N2S1 1624 aa8.14□□□□□ -1.11
SNCA-213ENST00000618500 AGLP35573 1532 aa8.14□□□□□ -1.11
SNCA-213ENST00000618500 C9orf84Q5VXU9 1444 aa8.13□□□□□ -1.11
SNCA-213ENST00000618500 CERKQ8TCT0 537 aa8.13□□□□□ -1.11
SNCA-213ENST00000618500 C3P01024 1663 aa8.13□□□□□ -1.11
SNCA-213ENST00000618500 YEATS2Q9ULM3 1422 aa8.12□□□□□ -1.11
SNCA-213ENST00000618500 ATP10AO60312 1499 aa8.11□□□□□ -1.11
SNCA-213ENST00000618500 SETD1BQ9UPS6 1966 aaKnown RBP8.1□□□□□ -1.11
SNCA-213ENST00000618500 DIP2CQ9Y2E4 1556 aa8.1□□□□□ -1.11
SNCA-213ENST00000618500 ITSN2Q9NZM3 1697 aa8.09□□□□□ -1.11
SNCA-213ENST00000618500 DMRT2Q9Y5R5 561 aa8.08□□□□□ -1.12
SNCA-213ENST00000618500 FAM9AQ8IZU1 332 aaPredicted RBP8.08□□□□□ -1.12
SNCA-213ENST00000618500 SUPT5HO00267 1087 aaKnown RBP8.07□□□□□ -1.12
SNCA-213ENST00000618500 PLCH2O75038 1416 aa8.07□□□□□ -1.12
SNCA-213ENST00000618500 ABCA6Q8N139 1617 aa8.07□□□□□ -1.12
SNCA-213ENST00000618500 NPATQ14207 1427 aa8.06□□□□□ -1.12
SNCA-213ENST00000618500 ZNF518AQ6AHZ1 1483 aa8.06□□□□□ -1.12
SNCA-213ENST00000618500 PREX2Q70Z35 1606 aa8.06□□□□□ -1.12
SNCA-213ENST00000618500 FAM135AQ9P2D6 1515 aa8.06□□□□□ -1.12
SNCA-213ENST00000618500 EEA1Q15075 1411 aa8.06□□□□□ -1.12
SNCA-213ENST00000618500 UHRF1BP1Q6BDS2 1440 aa8.06□□□□□ -1.12
SNCA-213ENST00000618500 KIF14Q15058 1648 aa8.06□□□□□ -1.12
SNCA-213ENST00000618500 MLH3Q9UHC1 1453 aa8.06□□□□□ -1.12
SNCA-213ENST00000618500 PLA2R1Q13018 1463 aa8.05□□□□□ -1.12
SNCA-213ENST00000618500 NCOA1Q15788 1441 aa8.05□□□□□ -1.12
SNCA-213ENST00000618500 CNTLNQ9NXG0 1405 aa8.05□□□□□ -1.12
SNCA-213ENST00000618500 MYO3AQ8NEV4 1616 aa8.04□□□□□ -1.12
SNCA-213ENST00000618500 KCNH8Q96L42 1107 aa8.03□□□□□ -1.12
SNCA-213ENST00000618500 CDC42BPBQ9Y5S2 1711 aa8.03□□□□□ -1.12
SNCA-213ENST00000618500 RAPGEF3O95398 923 aa8.03□□□□□ -1.12
SNCA-213ENST00000618500 ABCC1P33527 1531 aa8.03□□□□□ -1.12
SNCA-213ENST00000618500 POLR1AO95602 1720 aaPredicted RBP8.03□□□□□ -1.12
SNCA-213ENST00000618500 DISP3Q9P2K9 1392 aa8.02□□□□□ -1.13
SNCA-213ENST00000618500 TTBK1Q5TCY1 1321 aaPredicted RBP8.02□□□□□ -1.13
SNCA-213ENST00000618500 PLXNC1O60486 1568 aa8.02□□□□□ -1.13
SNCA-213ENST00000618500 SUPT6HQ7KZ85 1726 aaKnown RBP8.01□□□□□ -1.13
SNCA-213ENST00000618500 KIDINS220Q9ULH0 1771 aa8.01□□□□□ -1.13
SNCA-213ENST00000618500 ILDR2Q71H61 639 aa8.01□□□□□ -1.13
SNCA-213ENST00000618500 LRRIQ1Q96JM4 1722 aa8.01□□□□□ -1.13
SNCA-213ENST00000618500 TRAPPC8Q9Y2L5 1435 aa8□□□□□ -1.13
SNCA-213ENST00000618500 MED1Q15648 1581 aaPredicted RBP7.99□□□□□ -1.13
SNCA-213ENST00000618500 TCOF1Q13428 1488 aaKnown RBP7.99□□□□□ -1.13
SNCA-213ENST00000618500 CPS1P31327 1500 aa7.99□□□□□ -1.13
SNCA-213ENST00000618500 SCAPERQ9BY12 1400 aa7.99□□□□□ -1.13
SNCA-213ENST00000618500 INO80Q9ULG1 1556 aaPredicted RBP7.98□□□□□ -1.13
SNCA-213ENST00000618500 CAMSAP1Q5T5Y3 1602 aa7.98□□□□□ -1.13
SNCA-213ENST00000618500 ADGBQ8N7X0 1667 aa7.98□□□□□ -1.13
SNCA-213ENST00000618500 ARID4BQ4LE39 1312 aaPredicted RBP7.98□□□□□ -1.13
SNCA-213ENST00000618500 CDC42BPAQ5VT25 1732 aa7.98□□□□□ -1.13
SNCA-213ENST00000618500 SYNMO15061 1565 aa7.97□□□□□ -1.13
SNCA-213ENST00000618500 CEP170BQ9Y4F5 1589 aaPredicted RBP7.97□□□□□ -1.13
SNCA-213ENST00000618500 DEPDC5O75140 1603 aa7.97□□□□□ -1.13
SNCA-213ENST00000618500 CDK13Q14004 1512 aaKnown RBP7.96□□□□□ -1.14
SNCA-213ENST00000618500 PLEKHD1A6NEE1 506 aa7.96□□□□□ -1.14
SNCA-213ENST00000618500 HSPA2P54652 639 aa7.95□□□□□ -1.14
SNCA-213ENST00000618500 TROQ12816 1431 aaPredicted RBP7.95□□□□□ -1.14
SNCA-213ENST00000618500 FMN1Q68DA7 1419 aa7.95□□□□□ -1.14
SNCA-213ENST00000618500 CLTCQ00610 1675 aaKnown RBP7.95□□□□□ -1.14
SNCA-213ENST00000618500 SAMD9LQ8IVG5 1584 aa7.95□□□□□ -1.14
SNCA-213ENST00000618500 ARHGAP5Q13017 1502 aa7.94□□□□□ -1.14
SNCA-213ENST00000618500 CCDC18Q5T9S5 1454 aa7.94□□□□□ -1.14
SNCA-213ENST00000618500 CLIP1P30622 1438 aa7.94□□□□□ -1.14
SNCA-213ENST00000618500 NEURL4Q96JN8 1562 aa7.93□□□□□ -1.14
SNCA-213ENST00000618500 RNF17Q9BXT8 1623 aaKnown RBP7.93□□□□□ -1.14
SNCA-213ENST00000618500 DNMT1P26358 1616 aaKnown RBP7.92□□□□□ -1.14
SNCA-213ENST00000618500 EFCAB2Q5VUJ9 269 aa7.92□□□□□ -1.14
SNCA-213ENST00000618500 ALKQ9UM73 1620 aa7.91□□□□□ -1.14
SNCA-213ENST00000618500 A2ML1A8K2U0 1454 aa7.91□□□□□ -1.14
SNCA-213ENST00000618500 VWDEQ8N2E2 1590 aa7.91□□□□□ -1.14
SNCA-213ENST00000618500 PKD2Q13563 968 aa7.91□□□□□ -1.14
SNCA-213ENST00000618500 PLEKHH2Q8IVE3 1493 aa7.91□□□□□ -1.14
SNCA-213ENST00000618500 ZC3H13Q5T200 1668 aaKnown RBP7.91□□□□□ -1.14
SNCA-213ENST00000618500 PTPRKQ15262 1439 aa7.9□□□□□ -1.14
SNCA-213ENST00000618500 MED14O60244 1454 aa7.9□□□□□ -1.14
SNCA-213ENST00000618500 ATP7AQ04656 1500 aa7.9□□□□□ -1.15
SNCA-213ENST00000618500 PPP6R1Q9UPN7 881 aa7.89□□□□□ -1.15
SNCA-213ENST00000618500 KIAA1107Q9UPP5 1409 aa7.89□□□□□ -1.15
SNCA-213ENST00000618500 CSRNP3Q8WYN3 585 aa7.87□□□□□ -1.15
SNCA-213ENST00000618500 ARHGAP35Q9NRY4 1499 aa7.87□□□□□ -1.15
SNCA-213ENST00000618500 IQGAP1P46940 1657 aa7.87□□□□□ -1.15
SNCA-213ENST00000618500 PLPPR3Q6T4P5 718 aa7.86□□□□□ -1.15
SNCA-213ENST00000618500 KDM5AP29375 1690 aaKnown RBP7.86□□□□□ -1.15
SNCA-213ENST00000618500 FYCO1Q9BQS8 1478 aa7.86□□□□□ -1.15
SNCA-213ENST00000618500 CDK11AQ9UQ88 783 aaPredicted RBP7.86□□□□□ -1.15
SNCA-213ENST00000618500 CASKIN1Q8WXD9 1431 aa7.86□□□□□ -1.15
SNCA-213ENST00000618500 KDM5DQ9BY66 1539 aa7.85□□□□□ -1.15
SNCA-213ENST00000618500 SHANK2Q9UPX8 1470 aa7.85□□□□□ -1.15
SNCA-213ENST00000618500 EIF2AK4Q9P2K8 1649 aaKnown RBP7.84□□□□□ -1.15
SNCA-213ENST00000618500 RTEL1-TNFRSF6BF6WH68 1400 aa7.84□□□□□ -1.15
SNCA-213ENST00000618500 SYCP2Q9BX26 1530 aa7.84□□□□□ -1.15
SNCA-213ENST00000618500 A2MP01023 1474 aa7.84□□□□□ -1.15
SNCA-213ENST00000618500 PZPP20742 1482 aa7.84□□□□□ -1.15
SNCA-213ENST00000618500 NLRP1Q9C000 1473 aa7.84□□□□□ -1.15
SNCA-213ENST00000618500 CAMSAP2Q08AD1 1489 aa7.84□□□□□ -1.15
SNCA-213ENST00000618500 STRCP1A6NGW2 1772 aa7.84□□□□□ -1.16
SNCA-213ENST00000618500 ZMYM3Q14202 1370 aa7.83□□□□□ -1.16
SNCA-213ENST00000618500 XIRP1Q702N8 1843 aaKnown RBP7.82□□□□□ -1.16
SNCA-213ENST00000618500 P3H3Q8IVL6 736 aa7.82□□□□□ -1.16
SNCA-213ENST00000618500 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.81□□□□□ -1.16
SNCA-213ENST00000618500 CEBPAP49715 358 aaPredicted RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms