RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PPP4R2Q9NY27 417 aa13.87□□□□□ -0.19
VPS39-214ENST00000614932 AAMPQ13685 434 aa13.87□□□□□ -0.19
VPS39-214ENST00000614932 NCOA2Q15596 1464 aa13.87□□□□□ -0.19
VPS39-214ENST00000614932 RBM10P98175 930 aaKnown RBP13.86□□□□□ -0.19
VPS39-214ENST00000614932 MAPKBP1O60336 1514 aa13.86□□□□□ -0.19
VPS39-214ENST00000614932 PTPRKQ15262 1439 aa13.86□□□□□ -0.19
VPS39-214ENST00000614932 ADAMTS12P58397 1594 aa13.86□□□□□ -0.19
VPS39-214ENST00000614932 CDK13Q14004 1512 aaKnown RBP13.86□□□□□ -0.19
VPS39-214ENST00000614932 NEFMP07197 916 aa13.86□□□□□ -0.19
VPS39-214ENST00000614932 IFT140Q96RY7 1462 aa13.85□□□□□ -0.19
VPS39-214ENST00000614932 IQGAP2Q13576 1575 aa13.85□□□□□ -0.19
VPS39-214ENST00000614932 FAM43AQ8N2R8 423 aa13.84□□□□□ -0.19
VPS39-214ENST00000614932 MAGI3Q5TCQ9 1506 aa13.84□□□□□ -0.19
VPS39-214ENST00000614932 IRX6P78412 446 aaPredicted RBP13.83□□□□□ -0.2
VPS39-214ENST00000614932 PDIA4P13667 645 aaKnown RBP13.82□□□□□ -0.2
VPS39-214ENST00000614932 WDR62O43379 1518 aa13.82□□□□□ -0.2
VPS39-214ENST00000614932 MYOM3Q5VTT5 1437 aa13.8□□□□□ -0.2
VPS39-214ENST00000614932 EIF4G3O43432 1585 aaKnown RBP13.8□□□□□ -0.2
VPS39-214ENST00000614932 CCER2I3L3R5 266 aa13.79□□□□□ -0.2
VPS39-214ENST00000614932 ZNF644Q9H582 1327 aaPredicted RBP13.78□□□□□ -0.2
VPS39-214ENST00000614932 EPRSP07814 1512 aaKnown RBP13.78□□□□□ -0.2
VPS39-214ENST00000614932 GSE1Q14687 1217 aa13.77□□□□□ -0.2
VPS39-214ENST00000614932 HSP90AA2PQ14568 343 aaPredicted RBP13.77□□□□□ -0.21
VPS39-214ENST00000614932 RRP9O43818 475 aaKnown RBP13.77□□□□□ -0.21
VPS39-214ENST00000614932 GRIN2AQ12879 1464 aa13.76□□□□□ -0.21
VPS39-214ENST00000614932 CCDC18Q5T9S5 1454 aa13.76□□□□□ -0.21
VPS39-214ENST00000614932 FOXD1Q16676 465 aa13.76□□□□□ -0.21
VPS39-214ENST00000614932 ZNF777Q9ULD5 760 aaPredicted RBP13.76□□□□□ -0.21
VPS39-214ENST00000614932 THOC2Q8NI27 1593 aaKnown RBP13.76□□□□□ -0.21
VPS39-214ENST00000614932 SUPT6HQ7KZ85 1726 aaKnown RBP13.75□□□□□ -0.21
VPS39-214ENST00000614932 EHBP1L1Q8N3D4 1523 aa13.75□□□□□ -0.21
VPS39-214ENST00000614932 DISP1Q96F81 1524 aa13.74□□□□□ -0.21
VPS39-214ENST00000614932 PPM1GO15355 546 aaPredicted RBP13.74□□□□□ -0.21
VPS39-214ENST00000614932 KIAA0586Q9BVV6 1533 aa13.74□□□□□ -0.21
VPS39-214ENST00000614932 DDX10Q13206 875 aaKnown RBP13.73□□□□□ -0.21
VPS39-214ENST00000614932 JPH4Q96JJ6 628 aa13.73□□□□□ -0.21
VPS39-214ENST00000614932 HECW1Q76N89 1606 aa13.73□□□□□ -0.21
VPS39-214ENST00000614932 NAIPQ13075 1403 aa13.73□□□□□ -0.21
VPS39-214ENST00000614932 UGGT2Q9NYU1 1516 aa13.72□□□□□ -0.21
VPS39-214ENST00000614932 PTPN23Q9H3S7 1636 aa13.72□□□□□ -0.21
VPS39-214ENST00000614932 B4GALNT3Q6L9W6 998 aa13.72□□□□□ -0.21
VPS39-214ENST00000614932 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.71□□□□□ -0.21
VPS39-214ENST00000614932 BCL11BQ9C0K0 894 aaPredicted RBP13.71□□□□□ -0.21
VPS39-214ENST00000614932 PLB1Q6P1J6 1458 aa13.71□□□□□ -0.21
VPS39-214ENST00000614932 LAS1LQ9Y4W2 734 aaKnown RBP13.71□□□□□ -0.22
VPS39-214ENST00000614932 HFM1A2PYH4 1435 aa13.7□□□□□ -0.22
VPS39-214ENST00000614932 TONSLQ96HA7 1378 aa13.7□□□□□ -0.22
VPS39-214ENST00000614932 KIAA0556O60303 1618 aa13.69□□□□□ -0.22
VPS39-214ENST00000614932 PRG4Q92954 1404 aaPredicted RBP13.69□□□□□ -0.22
VPS39-214ENST00000614932 PPP1R15AO75807 674 aaPredicted RBP13.69□□□□□ -0.22
VPS39-214ENST00000614932 NUP153P49790 1475 aaKnown RBP13.69□□□□□ -0.22
VPS39-214ENST00000614932 CEP170Q5SW79 1584 aa13.68□□□□□ -0.22
VPS39-214ENST00000614932 SYNJ2O15056 1496 aa13.67□□□□□ -0.22
VPS39-214ENST00000614932 ANP32CO43423 234 aa13.66□□□□□ -0.22
VPS39-214ENST00000614932 HSP90AA1P07900 732 aaKnown RBP13.66□□□□□ -0.22
VPS39-214ENST00000614932 UACAQ9BZF9 1416 aa13.65□□□□□ -0.22
VPS39-214ENST00000614932 ARHGEF11O15085 1522 aa13.65□□□□□ -0.22
VPS39-214ENST00000614932 KDM6BO15054 1643 aa13.65□□□□□ -0.22
VPS39-214ENST00000614932 MAGI1Q96QZ7 1491 aaPredicted RBP13.65□□□□□ -0.22
VPS39-214ENST00000614932 CFDP1Q9UEE9 299 aaPredicted RBP13.64□□□□□ -0.23
VPS39-214ENST00000614932 FRAT1Q92837 279 aaPredicted RBP13.64□□□□□ -0.23
VPS39-214ENST00000614932 MPHOSPH9Q99550 1183 aa13.62□□□□□ -0.23
VPS39-214ENST00000614932 RAPGEF6Q8TEU7 1601 aa13.62□□□□□ -0.23
VPS39-214ENST00000614932 HNRNPUQ00839 825 aaKnown RBP eCLIP13.6□□□□□ -0.23
VPS39-214ENST00000614932 CARMIL2Q6F5E8 1435 aa13.6□□□□□ -0.23
VPS39-214ENST00000614932 TCOF1Q13428 1488 aaKnown RBP13.59□□□□□ -0.23
VPS39-214ENST00000614932 PLEKHD1A6NEE1 506 aa13.58□□□□□ -0.24
VPS39-214ENST00000614932 TAF7LQ5H9L4 462 aa13.58□□□□□ -0.24
VPS39-214ENST00000614932 DAPK1P53355 1430 aa13.58□□□□□ -0.24
VPS39-214ENST00000614932 MIA2Q96PC5 1412 aa13.58□□□□□ -0.24
VPS39-214ENST00000614932 NAP1L5Q96NT1 182 aaPredicted RBP13.58□□□□□ -0.24
VPS39-214ENST00000614932 ABCC5O15440 1437 aa13.57□□□□□ -0.24
VPS39-214ENST00000614932 SLC4A1APQ9BWU0 796 aaKnown RBP13.57□□□□□ -0.24
VPS39-214ENST00000614932 NUP160Q12769 1436 aa13.56□□□□□ -0.24
VPS39-214ENST00000614932 DCAF11Q8TEB1 546 aa13.56□□□□□ -0.24
VPS39-214ENST00000614932 DENND4BO75064 1496 aaPredicted RBP13.56□□□□□ -0.24
VPS39-214ENST00000614932 RRAGDQ9NQL2 400 aaPredicted RBP13.55□□□□□ -0.24
VPS39-214ENST00000614932 PRDM4Q9UKN5 801 aa13.55□□□□□ -0.24
VPS39-214ENST00000614932 TROQ12816 1431 aaPredicted RBP13.55□□□□□ -0.24
VPS39-214ENST00000614932 KIF14Q15058 1648 aa13.55□□□□□ -0.24
VPS39-214ENST00000614932 CALD1Q05682 793 aaKnown RBP13.55□□□□□ -0.24
VPS39-214ENST00000614932 L3MBTL2Q969R5 705 aa13.54□□□□□ -0.24
VPS39-214ENST00000614932 NFKBIBQ15653 356 aa13.54□□□□□ -0.24
VPS39-214ENST00000614932 NPM2Q86SE8 214 aaKnown RBP13.53□□□□□ -0.24
VPS39-214ENST00000614932 HNRNPMP52272 730 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS39-214ENST00000614932 ZNF326Q5BKZ1 582 aaKnown RBP13.52□□□□□ -0.24
VPS39-214ENST00000614932 AEBP2Q6ZN18 517 aaPredicted RBP13.51□□□□□ -0.25
VPS39-214ENST00000614932 GPATCH8Q9UKJ3 1502 aaKnown RBP13.51□□□□□ -0.25
VPS39-214ENST00000614932 CAMSAP2Q08AD1 1489 aa13.51□□□□□ -0.25
VPS39-214ENST00000614932 CNGB1Q14028 1251 aaPredicted RBP13.51□□□□□ -0.25
VPS39-214ENST00000614932 PTPRGP23470 1445 aa13.51□□□□□ -0.25
VPS39-214ENST00000614932 CENPJQ9HC77 1338 aaPredicted RBP13.51□□□□□ -0.25
VPS39-214ENST00000614932 ATP10BO94823 1461 aa13.5□□□□□ -0.25
VPS39-214ENST00000614932 PNNQ9H307 717 aaKnown RBP13.5□□□□□ -0.25
VPS39-214ENST00000614932 HSPA5P11021 654 aaKnown RBP13.49□□□□□ -0.25
VPS39-214ENST00000614932 GCC2Q8IWJ2 1684 aa13.48□□□□□ -0.25
VPS39-214ENST00000614932 RGS3P49796 1198 aa13.47□□□□□ -0.25
VPS39-214ENST00000614932 NBPF8Q3BBV2 869 aa13.47□□□□□ -0.25
VPS39-214ENST00000614932 DNMT1P26358 1616 aaKnown RBP13.46□□□□□ -0.25
VPS39-214ENST00000614932 AKNAQ7Z591 1439 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms