RNA–Protein interactions for RNA: ENST00000612828.4

CNTNAP3B-211, Transcript of contactin associated protein like 3B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CNTNAP3B, Length 7,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3B-211ENST00000612828 BECN1Q14457 450 aa13.81□□□□□ -0.2
CNTNAP3B-211ENST00000612828 MARCH6O60337 910 aa13.81□□□□□ -0.2
CNTNAP3B-211ENST00000612828 SIN3AQ96ST3 1273 aa13.81□□□□□ -0.2
CNTNAP3B-211ENST00000612828 SPRYD3Q8NCJ5 442 aa13.8□□□□□ -0.2
CNTNAP3B-211ENST00000612828 PLCD3Q8N3E9 789 aa13.79□□□□□ -0.2
CNTNAP3B-211ENST00000612828 CCDC180Q9P1Z9 1646 aa13.78□□□□□ -0.2
CNTNAP3B-211ENST00000612828 MSH5O43196 834 aa13.77□□□□□ -0.2
CNTNAP3B-211ENST00000612828 CCAR2Q8N163 923 aaKnown RBP13.77□□□□□ -0.2
CNTNAP3B-211ENST00000612828 HSP90AB1P08238 724 aaKnown RBP13.77□□□□□ -0.21
CNTNAP3B-211ENST00000612828 PPP1R15AO75807 674 aaPredicted RBP13.76□□□□□ -0.21
CNTNAP3B-211ENST00000612828 STK11IPQ8N1F8 1099 aa13.76□□□□□ -0.21
CNTNAP3B-211ENST00000612828 IBSPP21815 317 aaPredicted RBP13.75□□□□□ -0.21
CNTNAP3B-211ENST00000612828 MSNP26038 577 aaKnown RBP13.75□□□□□ -0.21
CNTNAP3B-211ENST00000612828 SOX12O15370 315 aa13.75□□□□□ -0.21
CNTNAP3B-211ENST00000612828 RRP7BPQ9NSQ0 103 aa13.74□□□□□ -0.21
CNTNAP3B-211ENST00000612828 CTDP1Q9Y5B0 961 aaPredicted RBP13.72□□□□□ -0.21
CNTNAP3B-211ENST00000612828 TNIKQ9UKE5 1360 aa13.72□□□□□ -0.21
CNTNAP3B-211ENST00000612828 RSPH4AQ5TD94 716 aa13.72□□□□□ -0.21
CNTNAP3B-211ENST00000612828 TMC1Q8TDI8 760 aa13.71□□□□□ -0.21
CNTNAP3B-211ENST00000612828 GSE1Q14687 1217 aa13.7□□□□□ -0.22
CNTNAP3B-211ENST00000612828 TPM4P67936 248 aa13.7□□□□□ -0.22
CNTNAP3B-211ENST00000612828 SOGA1O94964 1423 aa13.69□□□□□ -0.22
CNTNAP3B-211ENST00000612828 KDM2AQ9Y2K7 1162 aa13.69□□□□□ -0.22
CNTNAP3B-211ENST00000612828 ZFYVE27Q5T4F4 411 aa13.68□□□□□ -0.22
CNTNAP3B-211ENST00000612828 FTSJ3Q8IY81 847 aaKnown RBP13.68□□□□□ -0.22
CNTNAP3B-211ENST00000612828 HTATSF1O43719 755 aaKnown RBP13.68□□□□□ -0.22
CNTNAP3B-211ENST00000612828 SKIDA1Q1XH10 827 aa13.68□□□□□ -0.22
CNTNAP3B-211ENST00000612828 CECR2Q9BXF3 1484 aa13.68□□□□□ -0.22
CNTNAP3B-211ENST00000612828 GOLGA3Q08378 1498 aa13.67□□□□□ -0.22
CNTNAP3B-211ENST00000612828 MAP7D2Q96T17 732 aa13.66□□□□□ -0.22
CNTNAP3B-211ENST00000612828 CHMP3Q9Y3E7 222 aa13.65□□□□□ -0.22
CNTNAP3B-211ENST00000612828 HMGN5P82970 282 aaKnown RBP13.65□□□□□ -0.23
CNTNAP3B-211ENST00000612828 ODF2Q5BJF6 829 aa13.65□□□□□ -0.23
CNTNAP3B-211ENST00000612828 HOMER1Q86YM7 354 aa13.64□□□□□ -0.23
CNTNAP3B-211ENST00000612828 FBXW7Q969H0 707 aa13.64□□□□□ -0.23
CNTNAP3B-211ENST00000612828 CFAP44Q96MT7 982 aa13.64□□□□□ -0.23
CNTNAP3B-211ENST00000612828 IPO9Q96P70 1041 aaKnown RBP13.64□□□□□ -0.23
CNTNAP3B-211ENST00000612828 FRAT2O75474 233 aaPredicted RBP13.64□□□□□ -0.23
CNTNAP3B-211ENST00000612828 EIF4G2P78344 907 aaKnown RBP eCLIP13.63□□□□□ -0.23
CNTNAP3B-211ENST00000612828 WRNQ14191 1432 aaPredicted RBP eCLIP13.63□□□□□ -0.23
CNTNAP3B-211ENST00000612828 RSPH6AQ9H0K4 717 aa13.63□□□□□ -0.23
CNTNAP3B-211ENST00000612828 MTUS2Q5JR59 1369 aa13.63□□□□□ -0.23
CNTNAP3B-211ENST00000612828 SPDYE4A6NLX3 237 aa13.62□□□□□ -0.23
CNTNAP3B-211ENST00000612828 NPM1P06748 294 aaKnown RBP eCLIP13.62□□□□□ -0.23
CNTNAP3B-211ENST00000612828 APBB1O00213 710 aa13.61□□□□□ -0.23
CNTNAP3B-211ENST00000612828 MAP3K9P80192 1104 aa13.61□□□□□ -0.23
CNTNAP3B-211ENST00000612828 BCL11BQ9C0K0 894 aaPredicted RBP13.61□□□□□ -0.23
CNTNAP3B-211ENST00000612828 TPD52L1Q16890 204 aaPredicted RBP13.61□□□□□ -0.23
CNTNAP3B-211ENST00000612828 KANK4Q5T7N3 995 aaPredicted RBP13.6□□□□□ -0.23
CNTNAP3B-211ENST00000612828 TPM3P06753 285 aa13.59□□□□□ -0.23
CNTNAP3B-211ENST00000612828 STAC3Q96MF2 364 aa13.59□□□□□ -0.23
CNTNAP3B-211ENST00000612828 B4GALNT3Q6L9W6 998 aa13.58□□□□□ -0.23
CNTNAP3B-211ENST00000612828 ANKRD62A6NC57 917 aa13.58□□□□□ -0.24
CNTNAP3B-211ENST00000612828 TMEM132AQ24JP5 1023 aa13.58□□□□□ -0.24
CNTNAP3B-211ENST00000612828 TRIM34Q9BYJ4 488 aa13.58□□□□□ -0.24
CNTNAP3B-211ENST00000612828 TOMM22Q9NS69 142 aa13.57□□□□□ -0.24
CNTNAP3B-211ENST00000612828 TSHZ2Q9NRE2 1034 aa13.57□□□□□ -0.24
CNTNAP3B-211ENST00000612828 EEA1Q15075 1411 aa13.57□□□□□ -0.24
CNTNAP3B-211ENST00000612828 PCMTD1Q96MG8 357 aaPredicted RBP13.57□□□□□ -0.24
CNTNAP3B-211ENST00000612828 PSMD1Q99460 953 aa13.57□□□□□ -0.24
CNTNAP3B-211ENST00000612828 PUS7Q96PZ0 661 aaKnown RBP13.56□□□□□ -0.24
CNTNAP3B-211ENST00000612828 CT47A1Q5JQC4 288 aaPredicted RBP13.56□□□□□ -0.24
CNTNAP3B-211ENST00000612828 KCNH8Q96L42 1107 aa13.56□□□□□ -0.24
CNTNAP3B-211ENST00000612828 PPP1R1BQ9UD71 204 aaPredicted RBP13.56□□□□□ -0.24
CNTNAP3B-211ENST00000612828 CCAR1Q8IX12 1150 aaKnown RBP13.56□□□□□ -0.24
CNTNAP3B-211ENST00000612828 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.54□□□□□ -0.24
CNTNAP3B-211ENST00000612828 TRHP20396 242 aaPredicted RBP13.54□□□□□ -0.24
CNTNAP3B-211ENST00000612828 TTC16Q8NEE8 873 aa13.54□□□□□ -0.24
CNTNAP3B-211ENST00000612828 DDRGK1Q96HY6 314 aa13.54□□□□□ -0.24
CNTNAP3B-211ENST00000612828 GORABQ5T7V8 394 aa13.54□□□□□ -0.24
CNTNAP3B-211ENST00000612828 AEBP2Q6ZN18 517 aaPredicted RBP13.53□□□□□ -0.24
CNTNAP3B-211ENST00000612828 R3HCC1Q9Y3T6 440 aaKnown RBP13.53□□□□□ -0.24
CNTNAP3B-211ENST00000612828 HSP90AB2PQ58FF8 381 aa13.52□□□□□ -0.25
CNTNAP3B-211ENST00000612828 SLC4A3P48751 1232 aa13.51□□□□□ -0.25
CNTNAP3B-211ENST00000612828 CCDC43Q96MW1 224 aaKnown RBP13.51□□□□□ -0.25
CNTNAP3B-211ENST00000612828 TSR1Q2NL82 804 aaKnown RBP13.5□□□□□ -0.25
CNTNAP3B-211ENST00000612828 FOXD4L1Q9NU39 408 aa13.5□□□□□ -0.25
CNTNAP3B-211ENST00000612828 CEP164Q9UPV0 1460 aa13.5□□□□□ -0.25
CNTNAP3B-211ENST00000612828 SOGA3Q5TF21 947 aa13.5□□□□□ -0.25
CNTNAP3B-211ENST00000612828 NEFHP12036 1026 aa13.5□□□□□ -0.25
CNTNAP3B-211ENST00000612828 PDIA4P13667 645 aaKnown RBP13.5□□□□□ -0.25
CNTNAP3B-211ENST00000612828 CCDC88BA6NC98 1476 aa13.5□□□□□ -0.25
CNTNAP3B-211ENST00000612828 RGL3Q3MIN7 710 aa13.49□□□□□ -0.25
CNTNAP3B-211ENST00000612828 GTF2E1P29083 439 aaPredicted RBP13.49□□□□□ -0.25
CNTNAP3B-211ENST00000612828 GZF1Q9H116 711 aaPredicted RBP13.49□□□□□ -0.25
CNTNAP3B-211ENST00000612828 USP35Q9P2H5 1018 aa13.49□□□□□ -0.25
CNTNAP3B-211ENST00000612828 PHF14O94880 888 aa13.49□□□□□ -0.25
CNTNAP3B-211ENST00000612828 NAP1L1P55209 391 aaKnown RBP13.49□□□□□ -0.25
CNTNAP3B-211ENST00000612828 RB1CC1Q8TDY2 1594 aa13.48□□□□□ -0.25
CNTNAP3B-211ENST00000612828 PODXL2Q9NZ53 605 aa13.48□□□□□ -0.25
CNTNAP3B-211ENST00000612828 RGS3P49796 1198 aa13.47□□□□□ -0.25
CNTNAP3B-211ENST00000612828 WWC2Q6AWC2 1192 aa13.47□□□□□ -0.25
CNTNAP3B-211ENST00000612828 ZNF526Q8TF50 670 aaPredicted RBP13.47□□□□□ -0.25
CNTNAP3B-211ENST00000612828 PDCL3Q9H2J4 239 aa13.47□□□□□ -0.25
CNTNAP3B-211ENST00000612828 FRAT1Q92837 279 aaPredicted RBP13.47□□□□□ -0.25
CNTNAP3B-211ENST00000612828 HMMRO75330 724 aa13.47□□□□□ -0.25
CNTNAP3B-211ENST00000612828 CCNB3Q8WWL7 1395 aa13.47□□□□□ -0.25
CNTNAP3B-211ENST00000612828 HSP90AB3PQ58FF7 597 aa13.47□□□□□ -0.25
CNTNAP3B-211ENST00000612828 NF2P35240 595 aa13.46□□□□□ -0.25
CNTNAP3B-211ENST00000612828 MYCNP04198 464 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms