RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 CDC42BPBQ9Y5S2 1711 aa16.12■□□□□ 0.17
SYNE1-240ENST00000610489 ITSN2Q9NZM3 1697 aa16.11■□□□□ 0.17
SYNE1-240ENST00000610489 ARAP3Q8WWN8 1544 aa16.11■□□□□ 0.17
SYNE1-240ENST00000610489 TEX14Q8IWB6 1497 aa16.09■□□□□ 0.17
SYNE1-240ENST00000610489 PLCH2O75038 1416 aa16.09■□□□□ 0.17
SYNE1-240ENST00000610489 GPATCH8Q9UKJ3 1502 aaKnown RBP16.09■□□□□ 0.17
SYNE1-240ENST00000610489 CCNB3Q8WWL7 1395 aa16.09■□□□□ 0.17
SYNE1-240ENST00000610489 CFAP74Q9C0B2 1584 aa16.08■□□□□ 0.16
SYNE1-240ENST00000610489 ARHGAP5Q13017 1502 aa16.07■□□□□ 0.16
SYNE1-240ENST00000610489 FANCAO15360 1455 aa16.06■□□□□ 0.16
SYNE1-240ENST00000610489 PPARGC1BQ86YN6 1023 aaKnown RBP16.05■□□□□ 0.16
SYNE1-240ENST00000610489 NEO1Q92859 1461 aa16.04■□□□□ 0.16
SYNE1-240ENST00000610489 MYOM3Q5VTT5 1437 aa16.04■□□□□ 0.16
SYNE1-240ENST00000610489 PHLDB1Q86UU1 1377 aa16.03■□□□□ 0.16
SYNE1-240ENST00000610489 EFCAB2Q5VUJ9 269 aa16.01■□□□□ 0.15
SYNE1-240ENST00000610489 SAMD9LQ8IVG5 1584 aa16.01■□□□□ 0.15
SYNE1-240ENST00000610489 CFDP1Q9UEE9 299 aaPredicted RBP16■□□□□ 0.15
SYNE1-240ENST00000610489 AKNAQ7Z591 1439 aa16■□□□□ 0.15
SYNE1-240ENST00000610489 MIA2Q96PC5 1412 aa15.99■□□□□ 0.15
SYNE1-240ENST00000610489 PPP4R3CPQ6ZMV5 832 aa15.99■□□□□ 0.15
SYNE1-240ENST00000610489 SLC4A1APQ9BWU0 796 aaKnown RBP15.99■□□□□ 0.15
SYNE1-240ENST00000610489 ABCC1P33527 1531 aa15.98■□□□□ 0.15
SYNE1-240ENST00000610489 ADGRL1O94910 1474 aa15.98■□□□□ 0.15
SYNE1-240ENST00000610489 KDM6BO15054 1643 aa15.97■□□□□ 0.15
SYNE1-240ENST00000610489 FGD6Q6ZV73 1430 aa15.97■□□□□ 0.15
SYNE1-240ENST00000610489 PTPN23Q9H3S7 1636 aa15.97■□□□□ 0.15
SYNE1-240ENST00000610489 CAMSAP2Q08AD1 1489 aa15.96■□□□□ 0.15
SYNE1-240ENST00000610489 ZNF777Q9ULD5 760 aaPredicted RBP15.96■□□□□ 0.15
SYNE1-240ENST00000610489 PLEKHH2Q8IVE3 1493 aa15.95■□□□□ 0.14
SYNE1-240ENST00000610489 COL17A1Q9UMD9 1497 aaPredicted RBP15.95■□□□□ 0.14
SYNE1-240ENST00000610489 SYCP2Q9BX26 1530 aa15.94■□□□□ 0.14
SYNE1-240ENST00000610489 RICTORQ6R327 1708 aa15.94■□□□□ 0.14
SYNE1-240ENST00000610489 ARHGEF12Q9NZN5 1544 aa15.93■□□□□ 0.14
SYNE1-240ENST00000610489 SCAPERQ9BY12 1400 aa15.93■□□□□ 0.14
SYNE1-240ENST00000610489 ZNF644Q9H582 1327 aaPredicted RBP15.93■□□□□ 0.14
SYNE1-240ENST00000610489 TCOF1Q13428 1488 aaKnown RBP15.93■□□□□ 0.14
SYNE1-240ENST00000610489 KIAA1107Q9UPP5 1409 aa15.93■□□□□ 0.14
SYNE1-240ENST00000610489 FRMPD1Q5SYB0 1578 aa15.92■□□□□ 0.14
SYNE1-240ENST00000610489 DENND4BO75064 1496 aaPredicted RBP15.92■□□□□ 0.14
SYNE1-240ENST00000610489 POGZQ7Z3K3 1410 aa15.91■□□□□ 0.14
SYNE1-240ENST00000610489 ARHGEF5Q12774 1597 aa15.9■□□□□ 0.14
SYNE1-240ENST00000610489 MBD5Q9P267 1494 aa15.9■□□□□ 0.14
SYNE1-240ENST00000610489 ZNF518AQ6AHZ1 1483 aa15.89■□□□□ 0.13
SYNE1-240ENST00000610489 RRBP1Q9P2E9 1410 aaKnown RBP15.89■□□□□ 0.13
SYNE1-240ENST00000610489 TRAPPC8Q9Y2L5 1435 aa15.89■□□□□ 0.13
SYNE1-240ENST00000610489 KDM5CP41229 1560 aa15.88■□□□□ 0.13
SYNE1-240ENST00000610489 RAPGEF3O95398 923 aa15.87■□□□□ 0.13
SYNE1-240ENST00000610489 HNRNPMP52272 730 aaKnown RBP eCLIP15.87■□□□□ 0.13
SYNE1-240ENST00000610489 PIAS4Q8N2W9 510 aaPredicted RBP15.87■□□□□ 0.13
SYNE1-240ENST00000610489 ZMYM4Q5VZL5 1548 aa15.87■□□□□ 0.13
SYNE1-240ENST00000610489 CCDC141Q6ZP82 1450 aa15.86■□□□□ 0.13
SYNE1-240ENST00000610489 DNMT1P26358 1616 aaKnown RBP15.86■□□□□ 0.13
SYNE1-240ENST00000610489 CROCC2H7BZ55 1655 aa15.86■□□□□ 0.13
SYNE1-240ENST00000610489 FAM50AQ14320 339 aaKnown RBP15.85■□□□□ 0.13
SYNE1-240ENST00000610489 HECW2Q9P2P5 1572 aa15.85■□□□□ 0.13
SYNE1-240ENST00000610489 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.84■□□□□ 0.13
SYNE1-240ENST00000610489 AFAP1Q8N556 730 aa15.84■□□□□ 0.13
SYNE1-240ENST00000610489 INO80Q9ULG1 1556 aaPredicted RBP15.83■□□□□ 0.12
SYNE1-240ENST00000610489 RSPH4AQ5TD94 716 aa15.82■□□□□ 0.12
SYNE1-240ENST00000610489 KIDINS220Q9ULH0 1771 aa15.82■□□□□ 0.12
SYNE1-240ENST00000610489 DAPK1P53355 1430 aa15.82■□□□□ 0.12
SYNE1-240ENST00000610489 ZFYVE16Q7Z3T8 1539 aa15.81■□□□□ 0.12
SYNE1-240ENST00000610489 ABCC5O15440 1437 aa15.81■□□□□ 0.12
SYNE1-240ENST00000610489 MAGI2Q86UL8 1455 aa15.81■□□□□ 0.12
SYNE1-240ENST00000610489 MLH3Q9UHC1 1453 aa15.81■□□□□ 0.12
SYNE1-240ENST00000610489 MAST1Q9Y2H9 1570 aa15.8■□□□□ 0.12
SYNE1-240ENST00000610489 SHANK2Q9UPX8 1470 aa15.8■□□□□ 0.12
SYNE1-240ENST00000610489 ATP7AQ04656 1500 aa15.8■□□□□ 0.12
SYNE1-240ENST00000610489 ARHGEF40Q8TER5 1519 aa15.8■□□□□ 0.12
SYNE1-240ENST00000610489 SPAG9O60271 1321 aaKnown RBP15.79■□□□□ 0.12
SYNE1-240ENST00000610489 ABCA6Q8N139 1617 aa15.78■□□□□ 0.12
SYNE1-240ENST00000610489 C9orf84Q5VXU9 1444 aa15.78■□□□□ 0.12
SYNE1-240ENST00000610489 ADGBQ8N7X0 1667 aa15.77■□□□□ 0.12
SYNE1-240ENST00000610489 NCBP3Q53F19 620 aaKnown RBP15.77■□□□□ 0.12
SYNE1-240ENST00000610489 RTEL1-TNFRSF6BF6WH68 1400 aa15.77■□□□□ 0.12
SYNE1-240ENST00000610489 YEATS2Q9ULM3 1422 aa15.77■□□□□ 0.12
SYNE1-240ENST00000610489 DIP2CQ9Y2E4 1556 aa15.76■□□□□ 0.11
SYNE1-240ENST00000610489 TSPY4P0CV99 314 aa15.76■□□□□ 0.11
SYNE1-240ENST00000610489 TSPY10P0CW01 314 aa15.76■□□□□ 0.11
SYNE1-240ENST00000610489 PLXNC1O60486 1568 aa15.75■□□□□ 0.11
SYNE1-240ENST00000610489 MYT1LQ9UL68 1186 aa15.75■□□□□ 0.11
SYNE1-240ENST00000610489 PTPRKQ15262 1439 aa15.74■□□□□ 0.11
SYNE1-240ENST00000610489 ADGRL2O95490 1459 aa15.73■□□□□ 0.11
SYNE1-240ENST00000610489 ITGAEP38570 1179 aa15.72■□□□□ 0.11
SYNE1-240ENST00000610489 REREQ9P2R6 1566 aa15.71■□□□□ 0.11
SYNE1-240ENST00000610489 ATP10AO60312 1499 aa15.71■□□□□ 0.11
SYNE1-240ENST00000610489 CHIC2Q9UKJ5 165 aa15.7■□□□□ 0.1
SYNE1-240ENST00000610489 SIGLEC1Q9BZZ2 1709 aa15.69■□□□□ 0.1
SYNE1-240ENST00000610489 NCOA1Q15788 1441 aa15.69■□□□□ 0.1
SYNE1-240ENST00000610489 ANKRD30AQ9BXX3 1397 aa15.69■□□□□ 0.1
SYNE1-240ENST00000610489 ROCK1Q13464 1354 aa15.68■□□□□ 0.1
SYNE1-240ENST00000610489 A2MP01023 1474 aa15.68■□□□□ 0.1
SYNE1-240ENST00000610489 KIF15Q9NS87 1388 aa15.67■□□□□ 0.1
SYNE1-240ENST00000610489 DUOX2Q9NRD8 1548 aa15.66■□□□□ 0.1
SYNE1-240ENST00000610489 RRP7BPQ9NSQ0 103 aa15.64■□□□□ 0.1
SYNE1-240ENST00000610489 GCC2Q8IWJ2 1684 aa15.64■□□□□ 0.09
SYNE1-240ENST00000610489 DHX29Q7Z478 1369 aaKnown RBP15.64■□□□□ 0.09
SYNE1-240ENST00000610489 AGLP35573 1532 aa15.64■□□□□ 0.09
SYNE1-240ENST00000610489 BCORL1Q5H9F3 1711 aa15.64■□□□□ 0.09
SYNE1-240ENST00000610489 EIF2AK4Q9P2K8 1649 aaKnown RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms