RNA–Protein interactions for RNA: ENST00000601038.5

SCAF1-204, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-204ENST00000601038 MYO5CQ9NQX4 1742 aa27.73■■■□□ 2.03
SCAF1-204ENST00000601038 KIF14Q15058 1648 aa27.73■■■□□ 2.03
SCAF1-204ENST00000601038 YEATS2Q9ULM3 1422 aa27.73■■■□□ 2.03
SCAF1-204ENST00000601038 CASKIN1Q8WXD9 1431 aa27.71■■■□□ 2.03
SCAF1-204ENST00000601038 LRRIQ1Q96JM4 1722 aa27.71■■■□□ 2.03
SCAF1-204ENST00000601038 MADDQ8WXG6 1647 aa27.7■■■□□ 2.03
SCAF1-204ENST00000601038 CCDC18Q5T9S5 1454 aa27.67■■■□□ 2.02
SCAF1-204ENST00000601038 PCF11O94913 1555 aaKnown RBP27.65■■■□□ 2.02
SCAF1-204ENST00000601038 ARHGAP5Q13017 1502 aa27.64■■■□□ 2.02
SCAF1-204ENST00000601038 ILDR1Q86SU0 546 aaPredicted RBP27.61■■■□□ 2.01
SCAF1-204ENST00000601038 ATP10AO60312 1499 aa27.61■■■□□ 2.01
SCAF1-204ENST00000601038 SIGLEC1Q9BZZ2 1709 aa27.61■■■□□ 2.01
SCAF1-204ENST00000601038 RIMS1Q86UR5 1692 aaKnown RBP27.6■■■□□ 2.01
SCAF1-204ENST00000601038 ZNF518AQ6AHZ1 1483 aa27.6■■■□□ 2.01
SCAF1-204ENST00000601038 AFAP1Q8N556 730 aa27.59■■■□□ 2.01
SCAF1-204ENST00000601038 FYCO1Q9BQS8 1478 aa27.58■■■□□ 2.01
SCAF1-204ENST00000601038 MLECQ14165 292 aa27.57■■■□□ 2
SCAF1-204ENST00000601038 C9orf84Q5VXU9 1444 aa27.57■■■□□ 2
SCAF1-204ENST00000601038 CDC42BPBQ9Y5S2 1711 aa27.55■■■□□ 2
SCAF1-204ENST00000601038 KDM5CP41229 1560 aa27.54■■■□□ 2
SCAF1-204ENST00000601038 LMTK3Q96Q04 1460 aa27.51■■■□□ 2
SCAF1-204ENST00000601038 PREX2Q70Z35 1606 aa27.51■■□□□ 1.99
SCAF1-204ENST00000601038 MYT1LQ9UL68 1186 aa27.5■■□□□ 1.99
SCAF1-204ENST00000601038 PLPPR3Q6T4P5 718 aa27.49■■□□□ 1.99
SCAF1-204ENST00000601038 ARHGEF12Q9NZN5 1544 aa27.46■■□□□ 1.99
SCAF1-204ENST00000601038 MLH3Q9UHC1 1453 aa27.46■■□□□ 1.99
SCAF1-204ENST00000601038 FER1L4A9Z1Z3 1794 aa27.46■■□□□ 1.99
SCAF1-204ENST00000601038 ABCC1P33527 1531 aa27.46■■□□□ 1.99
SCAF1-204ENST00000601038 TRAPPC8Q9Y2L5 1435 aa27.45■■□□□ 1.98
SCAF1-204ENST00000601038 CDC42BPAQ5VT25 1732 aa27.44■■□□□ 1.98
SCAF1-204ENST00000601038 DIP2CQ9Y2E4 1556 aa27.42■■□□□ 1.98
SCAF1-204ENST00000601038 ITSN2Q9NZM3 1697 aa27.4■■□□□ 1.98
SCAF1-204ENST00000601038 REREQ9P2R6 1566 aa27.39■■□□□ 1.98
SCAF1-204ENST00000601038 ZNF777Q9ULD5 760 aaPredicted RBP27.39■■□□□ 1.98
SCAF1-204ENST00000601038 GPATCH8Q9UKJ3 1502 aaKnown RBP27.39■■□□□ 1.98
SCAF1-204ENST00000601038 HSPA2P54652 639 aa27.38■■□□□ 1.97
SCAF1-204ENST00000601038 ABCA6Q8N139 1617 aa27.37■■□□□ 1.97
SCAF1-204ENST00000601038 CEBPAP49715 358 aaPredicted RBP27.34■■□□□ 1.97
SCAF1-204ENST00000601038 MTUS2Q5JR59 1369 aa27.34■■□□□ 1.97
SCAF1-204ENST00000601038 AGLP35573 1532 aa27.33■■□□□ 1.97
SCAF1-204ENST00000601038 CFDP1Q9UEE9 299 aaPredicted RBP27.33■■□□□ 1.97
SCAF1-204ENST00000601038 SAMD9LQ8IVG5 1584 aa27.32■■□□□ 1.96
SCAF1-204ENST00000601038 CCNB3Q8WWL7 1395 aa27.32■■□□□ 1.96
SCAF1-204ENST00000601038 KIDINS220Q9ULH0 1771 aa27.32■■□□□ 1.96
SCAF1-204ENST00000601038 HNRNPMP52272 730 aaKnown RBP eCLIP27.31■■□□□ 1.96
SCAF1-204ENST00000601038 CEP162Q5TB80 1403 aa27.3■■□□□ 1.96
SCAF1-204ENST00000601038 KIAA1107Q9UPP5 1409 aa27.3■■□□□ 1.96
SCAF1-204ENST00000601038 SYCP2Q9BX26 1530 aa27.28■■□□□ 1.96
SCAF1-204ENST00000601038 PLEKHH2Q8IVE3 1493 aa27.27■■□□□ 1.96
SCAF1-204ENST00000601038 SPAG9O60271 1321 aaKnown RBP27.27■■□□□ 1.96
SCAF1-204ENST00000601038 FBXO41Q8TF61 875 aa27.27■■□□□ 1.96
SCAF1-204ENST00000601038 ESF1Q9H501 851 aaKnown RBP27.26■■□□□ 1.95
SCAF1-204ENST00000601038 SETD1BQ9UPS6 1966 aaKnown RBP27.24■■□□□ 1.95
SCAF1-204ENST00000601038 PREX1Q8TCU6 1659 aa27.24■■□□□ 1.95
SCAF1-204ENST00000601038 EHBP1L1Q8N3D4 1523 aa27.21■■□□□ 1.95
SCAF1-204ENST00000601038 UHRF1BP1Q6BDS2 1440 aa27.18■■□□□ 1.94
SCAF1-204ENST00000601038 CNTLNQ9NXG0 1405 aa27.18■■□□□ 1.94
SCAF1-204ENST00000601038 ATP7AQ04656 1500 aa27.17■■□□□ 1.94
SCAF1-204ENST00000601038 TIAM1Q13009 1591 aa27.17■■□□□ 1.94
SCAF1-204ENST00000601038 C3P01024 1663 aa27.16■■□□□ 1.94
SCAF1-204ENST00000601038 ZNF644Q9H582 1327 aaPredicted RBP27.16■■□□□ 1.94
SCAF1-204ENST00000601038 INO80Q9ULG1 1556 aaPredicted RBP27.14■■□□□ 1.93
SCAF1-204ENST00000601038 A2MP01023 1474 aa27.12■■□□□ 1.93
SCAF1-204ENST00000601038 MBD5Q9P267 1494 aa27.11■■□□□ 1.93
SCAF1-204ENST00000601038 LOC105371045A0A1W2PR82 267 aa27.1■■□□□ 1.93
SCAF1-204ENST00000601038 DMRT2Q9Y5R5 561 aa27.1■■□□□ 1.93
SCAF1-204ENST00000601038 SUPT6HQ7KZ85 1726 aaKnown RBP27.1■■□□□ 1.93
SCAF1-204ENST00000601038 PLXNC1O60486 1568 aa27.09■■□□□ 1.93
SCAF1-204ENST00000601038 ZMYM3Q14202 1370 aa27.08■■□□□ 1.93
SCAF1-204ENST00000601038 NCOA2Q15596 1464 aa27.06■■□□□ 1.92
SCAF1-204ENST00000601038 STRCQ7RTU9 1775 aa27.05■■□□□ 1.92
SCAF1-204ENST00000601038 CERKQ8TCT0 537 aa27.05■■□□□ 1.92
SCAF1-204ENST00000601038 RTEL1-TNFRSF6BF6WH68 1400 aa27.05■■□□□ 1.92
SCAF1-204ENST00000601038 MROH2AA6NES4 1674 aa27.05■■□□□ 1.92
SCAF1-204ENST00000601038 NPATQ14207 1427 aa27.04■■□□□ 1.92
SCAF1-204ENST00000601038 GGT6Q6P531 493 aa27.03■■□□□ 1.92
SCAF1-204ENST00000601038 PPP6R1Q9UPN7 881 aa27.03■■□□□ 1.92
SCAF1-204ENST00000601038 ADGBQ8N7X0 1667 aa27.02■■□□□ 1.92
SCAF1-204ENST00000601038 VPS8Q8N3P4 1428 aa27.02■■□□□ 1.92
SCAF1-204ENST00000601038 RSPH4AQ5TD94 716 aa27.02■■□□□ 1.92
SCAF1-204ENST00000601038 DHX29Q7Z478 1369 aaKnown RBP26.97■■□□□ 1.91
SCAF1-204ENST00000601038 CAMSAP2Q08AD1 1489 aa26.97■■□□□ 1.91
SCAF1-204ENST00000601038 CLTCQ00610 1675 aaKnown RBP26.96■■□□□ 1.91
SCAF1-204ENST00000601038 CCDC141Q6ZP82 1450 aa26.96■■□□□ 1.91
SCAF1-204ENST00000601038 PTPRTO14522 1441 aa26.96■■□□□ 1.91
SCAF1-204ENST00000601038 LRRC9Q6ZRR7 1453 aa26.95■■□□□ 1.91
SCAF1-204ENST00000601038 PTPRKQ15262 1439 aa26.91■■□□□ 1.9
SCAF1-204ENST00000601038 NCOA1Q15788 1441 aa26.91■■□□□ 1.9
SCAF1-204ENST00000601038 MAP3K1Q13233 1512 aa26.9■■□□□ 1.9
SCAF1-204ENST00000601038 KIF3BO15066 747 aa26.89■■□□□ 1.9
SCAF1-204ENST00000601038 TSPY4P0CV99 314 aa26.89■■□□□ 1.9
SCAF1-204ENST00000601038 TSPY10P0CW01 314 aa26.89■■□□□ 1.9
SCAF1-204ENST00000601038 KANK4Q5T7N3 995 aaPredicted RBP26.88■■□□□ 1.89
SCAF1-204ENST00000601038 ARHGEF5Q12774 1597 aa26.88■■□□□ 1.89
SCAF1-204ENST00000601038 CAMSAP1Q5T5Y3 1602 aa26.86■■□□□ 1.89
SCAF1-204ENST00000601038 MYO3AQ8NEV4 1616 aa26.82■■□□□ 1.88
SCAF1-204ENST00000601038 ZNF142P52746 1687 aaPredicted RBP26.8■■□□□ 1.88
SCAF1-204ENST00000601038 MIA2Q96PC5 1412 aa26.8■■□□□ 1.88
SCAF1-204ENST00000601038 CEP170BQ9Y4F5 1589 aaPredicted RBP26.8■■□□□ 1.88
SCAF1-204ENST00000601038 PKD2Q13563 968 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms