RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	ZFYVE16	Q7Z3T8	1539 aa		28.66	■■■□□ 2.18
SHKBP1-223	ENST00000600552	MYO5C	Q9NQX4	1742 aa		28.66	■■■□□ 2.18
SHKBP1-223	ENST00000600552	MYT1L	Q9UL68	1186 aa		28.65	■■■□□ 2.18
SHKBP1-223	ENST00000600552	TRO	Q12816	1431 aa	Predicted RBP	28.64	■■■□□ 2.18
SHKBP1-223	ENST00000600552	CLIP1	P30622	1438 aa		28.63	■■■□□ 2.17
SHKBP1-223	ENST00000600552	RIMS1	Q86UR5	1692 aa	Known RBP	28.63	■■■□□ 2.17
SHKBP1-223	ENST00000600552	LRRIQ1	Q96JM4	1722 aa		28.63	■■■□□ 2.17
SHKBP1-223	ENST00000600552	POGZ	Q7Z3K3	1410 aa		28.6	■■■□□ 2.17
SHKBP1-223	ENST00000600552	ZMYM4	Q5VZL5	1548 aa		28.6	■■■□□ 2.17
SHKBP1-223	ENST00000600552	ARHGAP5	Q13017	1502 aa		28.59	■■■□□ 2.17
SHKBP1-223	ENST00000600552	PCF11	O94913	1555 aa	Known RBP	28.56	■■■□□ 2.16
SHKBP1-223	ENST00000600552	MAGI2	Q86UL8	1455 aa		28.56	■■■□□ 2.16
SHKBP1-223	ENST00000600552	AFAP1	Q8N556	730 aa		28.55	■■■□□ 2.16
SHKBP1-223	ENST00000600552	SIGLEC1	Q9BZZ2	1709 aa		28.55	■■■□□ 2.16
SHKBP1-223	ENST00000600552	CASKIN1	Q8WXD9	1431 aa		28.54	■■■□□ 2.16
SHKBP1-223	ENST00000600552	ATP10A	O60312	1499 aa		28.5	■■■□□ 2.15
SHKBP1-223	ENST00000600552	CCDC18	Q5T9S5	1454 aa		28.49	■■■□□ 2.15
SHKBP1-223	ENST00000600552	HSPA2	P54652	639 aa		28.46	■■■□□ 2.15
SHKBP1-223	ENST00000600552	ZNF777	Q9ULD5	760 aa	Predicted RBP	28.46	■■■□□ 2.15
SHKBP1-223	ENST00000600552	CDC42BPB	Q9Y5S2	1711 aa		28.46	■■■□□ 2.15
SHKBP1-223	ENST00000600552	C9orf84	Q5VXU9	1444 aa		28.45	■■■□□ 2.15
SHKBP1-223	ENST00000600552	ZNF518A	Q6AHZ1	1483 aa		28.45	■■■□□ 2.14
SHKBP1-223	ENST00000600552	FER1L4	A9Z1Z3	1794 aa		28.43	■■■□□ 2.14
SHKBP1-223	ENST00000600552	LMTK3	Q96Q04	1460 aa		28.41	■■■□□ 2.14
SHKBP1-223	ENST00000600552	FYCO1	Q9BQS8	1478 aa		28.4	■■■□□ 2.14
SHKBP1-223	ENST00000600552	CEBPA	P49715	358 aa	Predicted RBP	28.39	■■■□□ 2.14
SHKBP1-223	ENST00000600552	PREX2	Q70Z35	1606 aa		28.38	■■■□□ 2.13
SHKBP1-223	ENST00000600552	TRAPPC8	Q9Y2L5	1435 aa		28.36	■■■□□ 2.13
SHKBP1-223	ENST00000600552	ARHGEF12	Q9NZN5	1544 aa		28.34	■■■□□ 2.13
SHKBP1-223	ENST00000600552	KDM5C	P41229	1560 aa		28.34	■■■□□ 2.13
SHKBP1-223	ENST00000600552	CDC42BPA	Q5VT25	1732 aa		28.33	■■■□□ 2.13
SHKBP1-223	ENST00000600552	ABCC1	P33527	1531 aa		28.32	■■■□□ 2.12
SHKBP1-223	ENST00000600552	DIP2C	Q9Y2E4	1556 aa		28.31	■■■□□ 2.12
SHKBP1-223	ENST00000600552	ITSN2	Q9NZM3	1697 aa		28.3	■■■□□ 2.12
SHKBP1-223	ENST00000600552	HNRNPM	P52272	730 aa	Known RBP eCLIP	28.29	■■■□□ 2.12
SHKBP1-223	ENST00000600552	ESF1	Q9H501	851 aa	Known RBP	28.29	■■■□□ 2.12
SHKBP1-223	ENST00000600552	ABCA6	Q8N139	1617 aa		28.29	■■■□□ 2.12
SHKBP1-223	ENST00000600552	MLH3	Q9UHC1	1453 aa		28.27	■■■□□ 2.12
SHKBP1-223	ENST00000600552	CFDP1	Q9UEE9	299 aa	Predicted RBP	28.26	■■■□□ 2.11
SHKBP1-223	ENST00000600552	MTUS2	Q5JR59	1369 aa		28.25	■■■□□ 2.11
SHKBP1-223	ENST00000600552	CCNB3	Q8WWL7	1395 aa		28.24	■■■□□ 2.11
SHKBP1-223	ENST00000600552	GPATCH8	Q9UKJ3	1502 aa	Known RBP	28.24	■■■□□ 2.11
SHKBP1-223	ENST00000600552	FBXO41	Q8TF61	875 aa		28.23	■■■□□ 2.11
SHKBP1-223	ENST00000600552	SPAG9	O60271	1321 aa	Known RBP	28.21	■■■□□ 2.11
SHKBP1-223	ENST00000600552	SAMD9L	Q8IVG5	1584 aa		28.21	■■■□□ 2.11
SHKBP1-223	ENST00000600552	SYCP2	Q9BX26	1530 aa		28.2	■■■□□ 2.1
SHKBP1-223	ENST00000600552	KIDINS220	Q9ULH0	1771 aa		28.19	■■■□□ 2.1
SHKBP1-223	ENST00000600552	CEP162	Q5TB80	1403 aa		28.17	■■■□□ 2.1
SHKBP1-223	ENST00000600552	RERE	Q9P2R6	1566 aa		28.16	■■■□□ 2.1
SHKBP1-223	ENST00000600552	PREX1	Q8TCU6	1659 aa		28.15	■■■□□ 2.1
SHKBP1-223	ENST00000600552	ZNF644	Q9H582	1327 aa	Predicted RBP	28.12	■■■□□ 2.09
SHKBP1-223	ENST00000600552	AGL	P35573	1532 aa		28.12	■■■□□ 2.09
SHKBP1-223	ENST00000600552	UHRF1BP1	Q6BDS2	1440 aa		28.1	■■■□□ 2.09
SHKBP1-223	ENST00000600552	SUPT6H	Q7KZ85	1726 aa	Known RBP	28.09	■■■□□ 2.09
SHKBP1-223	ENST00000600552	LOC105371045	A0A1W2PR82	267 aa		28.09	■■■□□ 2.09
SHKBP1-223	ENST00000600552	C3	P01024	1663 aa		28.09	■■■□□ 2.09
SHKBP1-223	ENST00000600552	PLEKHH2	Q8IVE3	1493 aa		28.08	■■■□□ 2.09
SHKBP1-223	ENST00000600552	SETD1B	Q9UPS6	1966 aa	Known RBP	28.08	■■■□□ 2.09
SHKBP1-223	ENST00000600552	KIAA1107	Q9UPP5	1409 aa		28.06	■■■□□ 2.08
SHKBP1-223	ENST00000600552	ATP7A	Q04656	1500 aa		28.05	■■■□□ 2.08
SHKBP1-223	ENST00000600552	EHBP1L1	Q8N3D4	1523 aa		28.04	■■■□□ 2.08
SHKBP1-223	ENST00000600552	GGT6	Q6P531	493 aa		28.04	■■■□□ 2.08
SHKBP1-223	ENST00000600552	TIAM1	Q13009	1591 aa		28.03	■■■□□ 2.08
SHKBP1-223	ENST00000600552	CERK	Q8TCT0	537 aa		28.02	■■■□□ 2.08
SHKBP1-223	ENST00000600552	CNTLN	Q9NXG0	1405 aa		28.01	■■■□□ 2.07
SHKBP1-223	ENST00000600552	DMRT2	Q9Y5R5	561 aa		27.99	■■■□□ 2.07
SHKBP1-223	ENST00000600552	A2M	P01023	1474 aa		27.99	■■■□□ 2.07
SHKBP1-223	ENST00000600552	INO80	Q9ULG1	1556 aa	Predicted RBP	27.97	■■■□□ 2.07
SHKBP1-223	ENST00000600552	ZMYM3	Q14202	1370 aa		27.97	■■■□□ 2.07
SHKBP1-223	ENST00000600552	STRC	Q7RTU9	1775 aa		27.96	■■■□□ 2.07
SHKBP1-223	ENST00000600552	NCOA2	Q15596	1464 aa		27.93	■■■□□ 2.06
SHKBP1-223	ENST00000600552	CLTC	Q00610	1675 aa	Known RBP	27.93	■■■□□ 2.06
SHKBP1-223	ENST00000600552	MBD5	Q9P267	1494 aa		27.9	■■■□□ 2.06
SHKBP1-223	ENST00000600552	ADGB	Q8N7X0	1667 aa		27.88	■■■□□ 2.05
SHKBP1-223	ENST00000600552	PLXNC1	O60486	1568 aa		27.88	■■■□□ 2.05
SHKBP1-223	ENST00000600552	MROH2A	A6NES4	1674 aa		27.87	■■■□□ 2.05
SHKBP1-223	ENST00000600552	CAMSAP2	Q08AD1	1489 aa		27.85	■■■□□ 2.05
SHKBP1-223	ENST00000600552	KIF3B	O15066	747 aa		27.84	■■■□□ 2.05
SHKBP1-223	ENST00000600552	NPAT	Q14207	1427 aa		27.84	■■■□□ 2.05
SHKBP1-223	ENST00000600552	VPS8	Q8N3P4	1428 aa		27.84	■■■□□ 2.05
SHKBP1-223	ENST00000600552	NCKAP5L	Q9HCH0	1330 aa		27.82	■■■□□ 2.04
SHKBP1-223	ENST00000600552	RTEL1-TNFRSF6B	F6WH68	1400 aa		27.82	■■■□□ 2.04
SHKBP1-223	ENST00000600552	CCDC141	Q6ZP82	1450 aa		27.82	■■■□□ 2.04
SHKBP1-223	ENST00000600552	DHX29	Q7Z478	1369 aa	Known RBP	27.81	■■■□□ 2.04
SHKBP1-223	ENST00000600552	CAMSAP1	Q5T5Y3	1602 aa		27.79	■■■□□ 2.04
SHKBP1-223	ENST00000600552	PTPRT	O14522	1441 aa		27.79	■■■□□ 2.04
SHKBP1-223	ENST00000600552	TSPY4	P0CV99	314 aa		27.79	■■■□□ 2.04
SHKBP1-223	ENST00000600552	TSPY10	P0CW01	314 aa		27.79	■■■□□ 2.04
SHKBP1-223	ENST00000600552	KANK4	Q5T7N3	995 aa	Predicted RBP	27.79	■■■□□ 2.04
SHKBP1-223	ENST00000600552	PTPRK	Q15262	1439 aa		27.78	■■■□□ 2.04
SHKBP1-223	ENST00000600552	NCOA1	Q15788	1441 aa		27.78	■■■□□ 2.04
SHKBP1-223	ENST00000600552	RSPH4A	Q5TD94	716 aa		27.78	■■■□□ 2.04
SHKBP1-223	ENST00000600552	PPP6R1	Q9UPN7	881 aa		27.78	■■■□□ 2.04
SHKBP1-223	ENST00000600552	LRRC9	Q6ZRR7	1453 aa		27.77	■■■□□ 2.04
SHKBP1-223	ENST00000600552	MYO3A	Q8NEV4	1616 aa		27.72	■■■□□ 2.03
SHKBP1-223	ENST00000600552	FBXO31	Q5XUX0	539 aa	Predicted RBP	27.72	■■■□□ 2.03
SHKBP1-223	ENST00000600552	WASHC2C	Q9Y4E1	1318 aa		27.71	■■■□□ 2.03
SHKBP1-223	ENST00000600552	APLP2	Q06481	763 aa		27.68	■■■□□ 2.02
SHKBP1-223	ENST00000600552	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	27.68	■■■□□ 2.02
SHKBP1-223	ENST00000600552	ARHGEF5	Q12774	1597 aa		27.67	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms