RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 AKNAQ7Z591 1439 aa30.17■■■□□ 2.42
UPF1-209ENST00000600310 COL17A1Q9UMD9 1497 aaPredicted RBP30.17■■■□□ 2.42
UPF1-209ENST00000600310 ARHGAP5Q13017 1502 aa30.17■■■□□ 2.42
UPF1-209ENST00000600310 PREX2Q70Z35 1606 aa30.16■■■□□ 2.42
UPF1-209ENST00000600310 KDM6BO15054 1643 aa30.15■■■□□ 2.42
UPF1-209ENST00000600310 CFAP74Q9C0B2 1584 aa30.15■■■□□ 2.42
UPF1-209ENST00000600310 CDC42BPAQ5VT25 1732 aa30.13■■■□□ 2.41
UPF1-209ENST00000600310 CFDP1Q9UEE9 299 aaPredicted RBP30.12■■■□□ 2.41
UPF1-209ENST00000600310 CDC42BPBQ9Y5S2 1711 aa30.12■■■□□ 2.41
UPF1-209ENST00000600310 ADGRL1O94910 1474 aa30.06■■■□□ 2.4
UPF1-209ENST00000600310 DENND4BO75064 1496 aaPredicted RBP30.05■■■□□ 2.4
UPF1-209ENST00000600310 SCAPERQ9BY12 1400 aa30.05■■■□□ 2.4
UPF1-209ENST00000600310 ITSN2Q9NZM3 1697 aa30.04■■■□□ 2.4
UPF1-209ENST00000600310 ZNF777Q9ULD5 760 aaPredicted RBP30.04■■■□□ 2.4
UPF1-209ENST00000600310 RAPGEF3O95398 923 aa30.02■■■□□ 2.4
UPF1-209ENST00000600310 MYOM3Q5VTT5 1437 aa30.01■■■□□ 2.39
UPF1-209ENST00000600310 SAMD9LQ8IVG5 1584 aa29.98■■■□□ 2.39
UPF1-209ENST00000600310 MIA2Q96PC5 1412 aa29.97■■■□□ 2.39
UPF1-209ENST00000600310 KIAA1107Q9UPP5 1409 aa29.97■■■□□ 2.39
UPF1-209ENST00000600310 ABCC1P33527 1531 aa29.97■■■□□ 2.39
UPF1-209ENST00000600310 PLEKHH2Q8IVE3 1493 aa29.97■■■□□ 2.39
UPF1-209ENST00000600310 ZNF644Q9H582 1327 aaPredicted RBP29.96■■■□□ 2.39
UPF1-209ENST00000600310 PPARGC1BQ86YN6 1023 aaKnown RBP29.96■■■□□ 2.39
UPF1-209ENST00000600310 ARHGEF12Q9NZN5 1544 aa29.96■■■□□ 2.39
UPF1-209ENST00000600310 POGZQ7Z3K3 1410 aa29.96■■■□□ 2.39
UPF1-209ENST00000600310 FRMPD1Q5SYB0 1578 aa29.94■■■□□ 2.38
UPF1-209ENST00000600310 HNRNPMP52272 730 aaKnown RBP eCLIP29.91■■■□□ 2.38
UPF1-209ENST00000600310 RICTORQ6R327 1708 aa29.91■■■□□ 2.38
UPF1-209ENST00000600310 TRAPPC8Q9Y2L5 1435 aa29.9■■■□□ 2.38
UPF1-209ENST00000600310 AFAP1Q8N556 730 aa29.9■■■□□ 2.38
UPF1-209ENST00000600310 ZNF518AQ6AHZ1 1483 aa29.89■■■□□ 2.38
UPF1-209ENST00000600310 SYCP2Q9BX26 1530 aa29.89■■■□□ 2.38
UPF1-209ENST00000600310 CAMSAP2Q08AD1 1489 aa29.88■■■□□ 2.37
UPF1-209ENST00000600310 FGD6Q6ZV73 1430 aa29.88■■■□□ 2.37
UPF1-209ENST00000600310 MBD5Q9P267 1494 aa29.86■■■□□ 2.37
UPF1-209ENST00000600310 ZMYM4Q5VZL5 1548 aa29.86■■■□□ 2.37
UPF1-209ENST00000600310 KDM5CP41229 1560 aa29.83■■■□□ 2.37
UPF1-209ENST00000600310 MAGI2Q86UL8 1455 aa29.82■■■□□ 2.36
UPF1-209ENST00000600310 RSPH4AQ5TD94 716 aa29.82■■■□□ 2.36
UPF1-209ENST00000600310 KDM4FA0A1W2PPD8 638 aa29.81■■■□□ 2.36
UPF1-209ENST00000600310 TCOF1Q13428 1488 aaKnown RBP29.8■■■□□ 2.36
UPF1-209ENST00000600310 PTPN23Q9H3S7 1636 aa29.78■■■□□ 2.36
UPF1-209ENST00000600310 MLH3Q9UHC1 1453 aa29.77■■■□□ 2.36
UPF1-209ENST00000600310 CCDC141Q6ZP82 1450 aa29.74■■■□□ 2.35
UPF1-209ENST00000600310 SPAG9O60271 1321 aaKnown RBP29.74■■■□□ 2.35
UPF1-209ENST00000600310 ARHGEF5Q12774 1597 aa29.74■■■□□ 2.35
UPF1-209ENST00000600310 YEATS2Q9ULM3 1422 aa29.74■■■□□ 2.35
UPF1-209ENST00000600310 ZFYVE16Q7Z3T8 1539 aa29.74■■■□□ 2.35
UPF1-209ENST00000600310 MYT1LQ9UL68 1186 aa29.72■■■□□ 2.35
UPF1-209ENST00000600310 HECW2Q9P2P5 1572 aa29.72■■■□□ 2.35
UPF1-209ENST00000600310 ARHGEF40Q8TER5 1519 aa29.71■■■□□ 2.35
UPF1-209ENST00000600310 FAM50AQ14320 339 aaKnown RBP29.69■■■□□ 2.34
UPF1-209ENST00000600310 TSPY4P0CV99 314 aa29.68■■■□□ 2.34
UPF1-209ENST00000600310 TSPY10P0CW01 314 aa29.68■■■□□ 2.34
UPF1-209ENST00000600310 RTEL1-TNFRSF6BF6WH68 1400 aa29.67■■■□□ 2.34
UPF1-209ENST00000600310 ABCC5O15440 1437 aa29.65■■■□□ 2.34
UPF1-209ENST00000600310 ATP10AO60312 1499 aa29.65■■■□□ 2.34
UPF1-209ENST00000600310 KIDINS220Q9ULH0 1771 aa29.64■■■□□ 2.34
UPF1-209ENST00000600310 RRBP1Q9P2E9 1410 aaKnown RBP29.64■■■□□ 2.34
UPF1-209ENST00000600310 ATP7AQ04656 1500 aa29.64■■■□□ 2.34
UPF1-209ENST00000600310 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.64■■■□□ 2.33
UPF1-209ENST00000600310 INO80Q9ULG1 1556 aaPredicted RBP29.63■■■□□ 2.33
UPF1-209ENST00000600310 DAPK1P53355 1430 aa29.62■■■□□ 2.33
UPF1-209ENST00000600310 DIP2CQ9Y2E4 1556 aa29.6■■■□□ 2.33
UPF1-209ENST00000600310 C9orf84Q5VXU9 1444 aa29.6■■■□□ 2.33
UPF1-209ENST00000600310 DNMT1P26358 1616 aaKnown RBP29.6■■■□□ 2.33
UPF1-209ENST00000600310 ABCA6Q8N139 1617 aa29.59■■■□□ 2.33
UPF1-209ENST00000600310 MAST1Q9Y2H9 1570 aa29.58■■■□□ 2.33
UPF1-209ENST00000600310 SHANK2Q9UPX8 1470 aa29.57■■■□□ 2.32
UPF1-209ENST00000600310 REREQ9P2R6 1566 aa29.54■■■□□ 2.32
UPF1-209ENST00000600310 ARID4BQ4LE39 1312 aaPredicted RBP29.51■■■□□ 2.32
UPF1-209ENST00000600310 CROCC2H7BZ55 1655 aa29.5■■■□□ 2.31
UPF1-209ENST00000600310 A2MP01023 1474 aa29.5■■■□□ 2.31
UPF1-209ENST00000600310 PTPRKQ15262 1439 aa29.47■■■□□ 2.31
UPF1-209ENST00000600310 AGLP35573 1532 aa29.47■■■□□ 2.31
UPF1-209ENST00000600310 CHIC2Q9UKJ5 165 aa29.47■■■□□ 2.31
UPF1-209ENST00000600310 DHX29Q7Z478 1369 aaKnown RBP29.47■■■□□ 2.31
UPF1-209ENST00000600310 SIGLEC1Q9BZZ2 1709 aa29.46■■■□□ 2.31
UPF1-209ENST00000600310 ANKRD30AQ9BXX3 1397 aa29.45■■■□□ 2.31
UPF1-209ENST00000600310 ADGBQ8N7X0 1667 aa29.44■■■□□ 2.3
UPF1-209ENST00000600310 PLXNC1O60486 1568 aa29.44■■■□□ 2.3
UPF1-209ENST00000600310 ADGRL2O95490 1459 aa29.43■■■□□ 2.3
UPF1-209ENST00000600310 ITGAEP38570 1179 aa29.43■■■□□ 2.3
UPF1-209ENST00000600310 NCOA1Q15788 1441 aa29.43■■■□□ 2.3
UPF1-209ENST00000600310 RRP7BPQ9NSQ0 103 aa29.42■■■□□ 2.3
UPF1-209ENST00000600310 KIF15Q9NS87 1388 aa29.41■■■□□ 2.3
UPF1-209ENST00000600310 ROCK1Q13464 1354 aa29.38■■■□□ 2.29
UPF1-209ENST00000600310 MLECQ14165 292 aa29.37■■■□□ 2.29
UPF1-209ENST00000600310 DUOX2Q9NRD8 1548 aa29.36■■■□□ 2.29
UPF1-209ENST00000600310 BCORL1Q5H9F3 1711 aa29.36■■■□□ 2.29
UPF1-209ENST00000600310 KIF3BO15066 747 aa29.33■■■□□ 2.29
UPF1-209ENST00000600310 ADAMTSL3P82987 1691 aa29.31■■■□□ 2.28
UPF1-209ENST00000600310 ERBINQ96RT1 1412 aa29.3■■■□□ 2.28
UPF1-209ENST00000600310 GGT6Q6P531 493 aa29.27■■■□□ 2.28
UPF1-209ENST00000600310 PPP6R1Q9UPN7 881 aa29.25■■■□□ 2.27
UPF1-209ENST00000600310 ANKRD50Q9ULJ7 1429 aa29.25■■■□□ 2.27
UPF1-209ENST00000600310 EIF2AK4Q9P2K8 1649 aaKnown RBP29.24■■■□□ 2.27
UPF1-209ENST00000600310 MADDQ8WXG6 1647 aa29.22■■■□□ 2.27
UPF1-209ENST00000600310 ESF1Q9H501 851 aaKnown RBP29.18■■■□□ 2.26
UPF1-209ENST00000600310 RNF17Q9BXT8 1623 aaKnown RBP29.17■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms