RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 ARHGEF40Q8TER5 1519 aa25.57■■□□□ 1.68
VRK3-221ENST00000600284 POGZQ7Z3K3 1410 aa25.55■■□□□ 1.68
VRK3-221ENST00000600284 ADAMTSL3P82987 1691 aa25.54■■□□□ 1.68
VRK3-221ENST00000600284 ZFYVE16Q7Z3T8 1539 aa25.51■■□□□ 1.67
VRK3-221ENST00000600284 ARHGAP5Q13017 1502 aa25.5■■□□□ 1.67
VRK3-221ENST00000600284 BCORL1Q5H9F3 1711 aa25.5■■□□□ 1.67
VRK3-221ENST00000600284 YEATS2Q9ULM3 1422 aa25.49■■□□□ 1.67
VRK3-221ENST00000600284 PTPRMP28827 1452 aa25.47■■□□□ 1.67
VRK3-221ENST00000600284 ZNF518AQ6AHZ1 1483 aa25.46■■□□□ 1.67
VRK3-221ENST00000600284 HECW2Q9P2P5 1572 aa25.44■■□□□ 1.66
VRK3-221ENST00000600284 ATP10AO60312 1499 aa25.42■■□□□ 1.66
VRK3-221ENST00000600284 AFAP1Q8N556 730 aa25.42■■□□□ 1.66
VRK3-221ENST00000600284 CDC42BPBQ9Y5S2 1711 aa25.42■■□□□ 1.66
VRK3-221ENST00000600284 PREX2Q70Z35 1606 aa25.41■■□□□ 1.66
VRK3-221ENST00000600284 MADDQ8WXG6 1647 aa25.4■■□□□ 1.66
VRK3-221ENST00000600284 KDM5CP41229 1560 aa25.39■■□□□ 1.65
VRK3-221ENST00000600284 CEP162Q5TB80 1403 aa25.38■■□□□ 1.65
VRK3-221ENST00000600284 C9orf84Q5VXU9 1444 aa25.37■■□□□ 1.65
VRK3-221ENST00000600284 MLH3Q9UHC1 1453 aa25.34■■□□□ 1.65
VRK3-221ENST00000600284 MTUS2Q5JR59 1369 aa25.33■■□□□ 1.65
VRK3-221ENST00000600284 ABCC1P33527 1531 aa25.33■■□□□ 1.65
VRK3-221ENST00000600284 CDC42BPAQ5VT25 1732 aa25.33■■□□□ 1.65
VRK3-221ENST00000600284 SIGLEC1Q9BZZ2 1709 aa25.33■■□□□ 1.65
VRK3-221ENST00000600284 MYT1LQ9UL68 1186 aa25.33■■□□□ 1.65
VRK3-221ENST00000600284 GPATCH8Q9UKJ3 1502 aaKnown RBP25.32■■□□□ 1.64
VRK3-221ENST00000600284 ARHGEF12Q9NZN5 1544 aa25.32■■□□□ 1.64
VRK3-221ENST00000600284 TRAPPC8Q9Y2L5 1435 aa25.31■■□□□ 1.64
VRK3-221ENST00000600284 MLECQ14165 292 aa25.3■■□□□ 1.64
VRK3-221ENST00000600284 RIMS1Q86UR5 1692 aaKnown RBP25.29■■□□□ 1.64
VRK3-221ENST00000600284 ZNF777Q9ULD5 760 aaPredicted RBP25.28■■□□□ 1.64
VRK3-221ENST00000600284 CCNB3Q8WWL7 1395 aa25.28■■□□□ 1.64
VRK3-221ENST00000600284 ITSN2Q9NZM3 1697 aa25.27■■□□□ 1.64
VRK3-221ENST00000600284 CFDP1Q9UEE9 299 aaPredicted RBP25.27■■□□□ 1.64
VRK3-221ENST00000600284 REREQ9P2R6 1566 aa25.26■■□□□ 1.63
VRK3-221ENST00000600284 DIP2CQ9Y2E4 1556 aa25.25■■□□□ 1.63
VRK3-221ENST00000600284 KIAA1107Q9UPP5 1409 aa25.24■■□□□ 1.63
VRK3-221ENST00000600284 LOC105371045A0A1W2PR82 267 aa25.24■■□□□ 1.63
VRK3-221ENST00000600284 PLEKHH2Q8IVE3 1493 aa25.23■■□□□ 1.63
VRK3-221ENST00000600284 SAMD9LQ8IVG5 1584 aa25.22■■□□□ 1.63
VRK3-221ENST00000600284 EHBP1L1Q8N3D4 1523 aa25.22■■□□□ 1.63
VRK3-221ENST00000600284 HNRNPMP52272 730 aaKnown RBP eCLIP25.2■■□□□ 1.62
VRK3-221ENST00000600284 FER1L4A9Z1Z3 1794 aa25.2■■□□□ 1.62
VRK3-221ENST00000600284 ABCA6Q8N139 1617 aa25.19■■□□□ 1.62
VRK3-221ENST00000600284 AGLP35573 1532 aa25.19■■□□□ 1.62
VRK3-221ENST00000600284 LMTK3Q96Q04 1460 aa25.19■■□□□ 1.62
VRK3-221ENST00000600284 SYCP2Q9BX26 1530 aa25.17■■□□□ 1.62
VRK3-221ENST00000600284 SPAG9O60271 1321 aaKnown RBP25.17■■□□□ 1.62
VRK3-221ENST00000600284 KIDINS220Q9ULH0 1771 aa25.17■■□□□ 1.62
VRK3-221ENST00000600284 PLPPR3Q6T4P5 718 aa25.15■■□□□ 1.62
VRK3-221ENST00000600284 TIAM1Q13009 1591 aa25.14■■□□□ 1.61
VRK3-221ENST00000600284 VPS8Q8N3P4 1428 aa25.13■■□□□ 1.61
VRK3-221ENST00000600284 ESF1Q9H501 851 aaKnown RBP25.09■■□□□ 1.61
VRK3-221ENST00000600284 CEBPAP49715 358 aaPredicted RBP25.08■■□□□ 1.61
VRK3-221ENST00000600284 ZNF644Q9H582 1327 aaPredicted RBP25.08■■□□□ 1.6
VRK3-221ENST00000600284 NCOA2Q15596 1464 aa25.08■■□□□ 1.6
VRK3-221ENST00000600284 ATP7AQ04656 1500 aa25.07■■□□□ 1.6
VRK3-221ENST00000600284 SUPT6HQ7KZ85 1726 aaKnown RBP25.06■■□□□ 1.6
VRK3-221ENST00000600284 MBD5Q9P267 1494 aa25.06■■□□□ 1.6
VRK3-221ENST00000600284 CNTLNQ9NXG0 1405 aa25.04■■□□□ 1.6
VRK3-221ENST00000600284 HSPA2P54652 639 aa25.04■■□□□ 1.6
VRK3-221ENST00000600284 RSPH4AQ5TD94 716 aa25.04■■□□□ 1.6
VRK3-221ENST00000600284 INO80Q9ULG1 1556 aaPredicted RBP25.04■■□□□ 1.6
VRK3-221ENST00000600284 ILDR1Q86SU0 546 aaPredicted RBP25.03■■□□□ 1.6
VRK3-221ENST00000600284 RTEL1-TNFRSF6BF6WH68 1400 aa25.03■■□□□ 1.6
VRK3-221ENST00000600284 MAP3K1Q13233 1512 aa25.02■■□□□ 1.6
VRK3-221ENST00000600284 A2MP01023 1474 aa25.02■■□□□ 1.6
VRK3-221ENST00000600284 LRRC9Q6ZRR7 1453 aa25.02■■□□□ 1.6
VRK3-221ENST00000600284 SETD1BQ9UPS6 1966 aaKnown RBP25■■□□□ 1.59
VRK3-221ENST00000600284 PREX1Q8TCU6 1659 aa24.98■■□□□ 1.59
VRK3-221ENST00000600284 PLXNC1O60486 1568 aa24.98■■□□□ 1.59
VRK3-221ENST00000600284 UHRF1BP1Q6BDS2 1440 aa24.96■■□□□ 1.59
VRK3-221ENST00000600284 PPP6R1Q9UPN7 881 aa24.96■■□□□ 1.59
VRK3-221ENST00000600284 CAMSAP2Q08AD1 1489 aa24.96■■□□□ 1.59
VRK3-221ENST00000600284 C3P01024 1663 aa24.94■■□□□ 1.58
VRK3-221ENST00000600284 CCDC141Q6ZP82 1450 aa24.94■■□□□ 1.58
VRK3-221ENST00000600284 ADGBQ8N7X0 1667 aa24.94■■□□□ 1.58
VRK3-221ENST00000600284 KANK4Q5T7N3 995 aaPredicted RBP24.93■■□□□ 1.58
VRK3-221ENST00000600284 DHX29Q7Z478 1369 aaKnown RBP24.93■■□□□ 1.58
VRK3-221ENST00000600284 ZMYM3Q14202 1370 aa24.92■■□□□ 1.58
VRK3-221ENST00000600284 GGT6Q6P531 493 aa24.9■■□□□ 1.58
VRK3-221ENST00000600284 MROH2AA6NES4 1674 aa24.9■■□□□ 1.58
VRK3-221ENST00000600284 NPATQ14207 1427 aa24.89■■□□□ 1.58
VRK3-221ENST00000600284 TSPY4P0CV99 314 aa24.89■■□□□ 1.58
VRK3-221ENST00000600284 TSPY10P0CW01 314 aa24.89■■□□□ 1.58
VRK3-221ENST00000600284 ARHGEF5Q12774 1597 aa24.88■■□□□ 1.57
VRK3-221ENST00000600284 APLP2Q06481 763 aa24.87■■□□□ 1.57
VRK3-221ENST00000600284 DMRT2Q9Y5R5 561 aa24.87■■□□□ 1.57
VRK3-221ENST00000600284 MIA2Q96PC5 1412 aa24.86■■□□□ 1.57
VRK3-221ENST00000600284 FBXO41Q8TF61 875 aa24.84■■□□□ 1.57
VRK3-221ENST00000600284 MYOM3Q5VTT5 1437 aa24.84■■□□□ 1.57
VRK3-221ENST00000600284 KIF3BO15066 747 aa24.81■■□□□ 1.56
VRK3-221ENST00000600284 CLTCQ00610 1675 aaKnown RBP24.8■■□□□ 1.56
VRK3-221ENST00000600284 PTPRKQ15262 1439 aa24.78■■□□□ 1.56
VRK3-221ENST00000600284 STRCQ7RTU9 1775 aa24.76■■□□□ 1.55
VRK3-221ENST00000600284 FAM135AQ9P2D6 1515 aa24.76■■□□□ 1.55
VRK3-221ENST00000600284 MAST1Q9Y2H9 1570 aa24.76■■□□□ 1.55
VRK3-221ENST00000600284 PTPRTO14522 1441 aa24.73■■□□□ 1.55
VRK3-221ENST00000600284 WASHC2CQ9Y4E1 1318 aa24.71■■□□□ 1.55
VRK3-221ENST00000600284 CERKQ8TCT0 537 aa24.71■■□□□ 1.55
VRK3-221ENST00000600284 NCOA1Q15788 1441 aa24.7■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms