RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 TIAM1Q13009 1591 aa28.71■■■□□ 2.19
LIG1-216ENST00000598938 ZMYM4Q5VZL5 1548 aa28.69■■■□□ 2.18
LIG1-216ENST00000598938 MAP3K1Q13233 1512 aa28.69■■■□□ 2.18
LIG1-216ENST00000598938 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.69■■■□□ 2.18
LIG1-216ENST00000598938 RIMS1Q86UR5 1692 aaKnown RBP28.68■■■□□ 2.18
LIG1-216ENST00000598938 KIF14Q15058 1648 aa28.68■■■□□ 2.18
LIG1-216ENST00000598938 ARID4BQ4LE39 1312 aaPredicted RBP28.68■■■□□ 2.18
LIG1-216ENST00000598938 FANCAO15360 1455 aa28.67■■■□□ 2.18
LIG1-216ENST00000598938 AKNAQ7Z591 1439 aa28.67■■■□□ 2.18
LIG1-216ENST00000598938 TTC37Q6PGP7 1564 aa28.65■■■□□ 2.18
LIG1-216ENST00000598938 EHBP1L1Q8N3D4 1523 aa28.64■■■□□ 2.17
LIG1-216ENST00000598938 MTUS2Q5JR59 1369 aa28.63■■■□□ 2.17
LIG1-216ENST00000598938 POGZQ7Z3K3 1410 aa28.62■■■□□ 2.17
LIG1-216ENST00000598938 MAGI2Q86UL8 1455 aa28.61■■■□□ 2.17
LIG1-216ENST00000598938 ZFYVE16Q7Z3T8 1539 aa28.59■■■□□ 2.17
LIG1-216ENST00000598938 LRRC9Q6ZRR7 1453 aa28.58■■■□□ 2.17
LIG1-216ENST00000598938 SIGLEC1Q9BZZ2 1709 aa28.53■■■□□ 2.16
LIG1-216ENST00000598938 APLP2Q06481 763 aa28.53■■■□□ 2.16
LIG1-216ENST00000598938 FER1L4A9Z1Z3 1794 aa28.52■■■□□ 2.16
LIG1-216ENST00000598938 MYO5CQ9NQX4 1742 aa28.52■■■□□ 2.16
LIG1-216ENST00000598938 PLCH2O75038 1416 aa28.52■■■□□ 2.16
LIG1-216ENST00000598938 KANK4Q5T7N3 995 aaPredicted RBP28.51■■■□□ 2.15
LIG1-216ENST00000598938 YEATS2Q9ULM3 1422 aa28.49■■■□□ 2.15
LIG1-216ENST00000598938 SUPT6HQ7KZ85 1726 aaKnown RBP28.48■■■□□ 2.15
LIG1-216ENST00000598938 PREX2Q70Z35 1606 aa28.45■■■□□ 2.14
LIG1-216ENST00000598938 NCOA2Q15596 1464 aa28.45■■■□□ 2.14
LIG1-216ENST00000598938 CDC42BPAQ5VT25 1732 aa28.43■■■□□ 2.14
LIG1-216ENST00000598938 GPATCH8Q9UKJ3 1502 aaKnown RBP28.43■■■□□ 2.14
LIG1-216ENST00000598938 CDC42BPBQ9Y5S2 1711 aa28.42■■■□□ 2.14
LIG1-216ENST00000598938 CCNB3Q8WWL7 1395 aa28.41■■■□□ 2.14
LIG1-216ENST00000598938 SCAPERQ9BY12 1400 aa28.41■■■□□ 2.14
LIG1-216ENST00000598938 ARHGAP5Q13017 1502 aa28.4■■■□□ 2.14
LIG1-216ENST00000598938 ARHGEF12Q9NZN5 1544 aa28.4■■■□□ 2.14
LIG1-216ENST00000598938 PREX1Q8TCU6 1659 aa28.38■■■□□ 2.13
LIG1-216ENST00000598938 EFCAB2Q5VUJ9 269 aa28.38■■■□□ 2.13
LIG1-216ENST00000598938 ATP10AO60312 1499 aa28.38■■■□□ 2.13
LIG1-216ENST00000598938 C9orf84Q5VXU9 1444 aa28.37■■■□□ 2.13
LIG1-216ENST00000598938 HSPA2P54652 639 aa28.36■■■□□ 2.13
LIG1-216ENST00000598938 ITSN2Q9NZM3 1697 aa28.35■■■□□ 2.13
LIG1-216ENST00000598938 ZNF518AQ6AHZ1 1483 aa28.32■■■□□ 2.12
LIG1-216ENST00000598938 KDM5CP41229 1560 aa28.31■■■□□ 2.12
LIG1-216ENST00000598938 CFDP1Q9UEE9 299 aaPredicted RBP28.29■■■□□ 2.12
LIG1-216ENST00000598938 MLECQ14165 292 aa28.28■■■□□ 2.12
LIG1-216ENST00000598938 CERKQ8TCT0 537 aa28.27■■■□□ 2.12
LIG1-216ENST00000598938 SAMD9LQ8IVG5 1584 aa28.27■■■□□ 2.12
LIG1-216ENST00000598938 REREQ9P2R6 1566 aa28.27■■■□□ 2.12
LIG1-216ENST00000598938 PLPPR3Q6T4P5 718 aa28.26■■■□□ 2.11
LIG1-216ENST00000598938 ABCC1P33527 1531 aa28.26■■■□□ 2.11
LIG1-216ENST00000598938 MYOM3Q5VTT5 1437 aa28.25■■■□□ 2.11
LIG1-216ENST00000598938 SETD1BQ9UPS6 1966 aaKnown RBP28.24■■■□□ 2.11
LIG1-216ENST00000598938 ZNF777Q9ULD5 760 aaPredicted RBP28.21■■■□□ 2.11
LIG1-216ENST00000598938 MIA2Q96PC5 1412 aa28.2■■■□□ 2.11
LIG1-216ENST00000598938 PLEKHH2Q8IVE3 1493 aa28.2■■■□□ 2.1
LIG1-216ENST00000598938 DIP2CQ9Y2E4 1556 aa28.2■■■□□ 2.1
LIG1-216ENST00000598938 STRCQ7RTU9 1775 aa28.18■■■□□ 2.1
LIG1-216ENST00000598938 KIAA1107Q9UPP5 1409 aa28.18■■■□□ 2.1
LIG1-216ENST00000598938 SYCP2Q9BX26 1530 aa28.17■■■□□ 2.1
LIG1-216ENST00000598938 UHRF1BP1Q6BDS2 1440 aa28.17■■■□□ 2.1
LIG1-216ENST00000598938 ZNF644Q9H582 1327 aaPredicted RBP28.17■■■□□ 2.1
LIG1-216ENST00000598938 PPARGC1BQ86YN6 1023 aaKnown RBP28.16■■■□□ 2.1
LIG1-216ENST00000598938 CAMSAP2Q08AD1 1489 aa28.15■■■□□ 2.1
LIG1-216ENST00000598938 MLH3Q9UHC1 1453 aa28.15■■■□□ 2.1
LIG1-216ENST00000598938 DMRT2Q9Y5R5 561 aa28.15■■■□□ 2.1
LIG1-216ENST00000598938 ABCA6Q8N139 1617 aa28.14■■■□□ 2.09
LIG1-216ENST00000598938 TRAPPC8Q9Y2L5 1435 aa28.13■■■□□ 2.09
LIG1-216ENST00000598938 AGLP35573 1532 aa28.13■■■□□ 2.09
LIG1-216ENST00000598938 FGD6Q6ZV73 1430 aa28.12■■■□□ 2.09
LIG1-216ENST00000598938 C3P01024 1663 aa28.12■■■□□ 2.09
LIG1-216ENST00000598938 MBD5Q9P267 1494 aa28.1■■■□□ 2.09
LIG1-216ENST00000598938 HNRNPMP52272 730 aaKnown RBP eCLIP28.1■■■□□ 2.09
LIG1-216ENST00000598938 AFAP1Q8N556 730 aa28.09■■■□□ 2.09
LIG1-216ENST00000598938 PTPN23Q9H3S7 1636 aa28.08■■■□□ 2.09
LIG1-216ENST00000598938 CEBPAP49715 358 aaPredicted RBP28.08■■■□□ 2.09
LIG1-216ENST00000598938 TCOF1Q13428 1488 aaKnown RBP28.07■■■□□ 2.08
LIG1-216ENST00000598938 ARHGEF5Q12774 1597 aa28.04■■■□□ 2.08
LIG1-216ENST00000598938 PTPRTO14522 1441 aa28.04■■■□□ 2.08
LIG1-216ENST00000598938 KIDINS220Q9ULH0 1771 aa28.01■■■□□ 2.08
LIG1-216ENST00000598938 MYT1LQ9UL68 1186 aa28.01■■■□□ 2.07
LIG1-216ENST00000598938 CCDC141Q6ZP82 1450 aa28.01■■■□□ 2.07
LIG1-216ENST00000598938 CNTLNQ9NXG0 1405 aa28.01■■■□□ 2.07
LIG1-216ENST00000598938 RSPH4AQ5TD94 716 aa27.99■■■□□ 2.07
LIG1-216ENST00000598938 MROH2AA6NES4 1674 aa27.98■■■□□ 2.07
LIG1-216ENST00000598938 ESF1Q9H501 851 aaKnown RBP27.96■■■□□ 2.07
LIG1-216ENST00000598938 IQSEC2Q5JU85 1478 aa27.95■■■□□ 2.07
LIG1-216ENST00000598938 SPAG9O60271 1321 aaKnown RBP27.95■■■□□ 2.07
LIG1-216ENST00000598938 INO80Q9ULG1 1556 aaPredicted RBP27.95■■■□□ 2.07
LIG1-216ENST00000598938 ATP7AQ04656 1500 aa27.93■■■□□ 2.06
LIG1-216ENST00000598938 DNMT1P26358 1616 aaKnown RBP27.92■■■□□ 2.06
LIG1-216ENST00000598938 RTEL1-TNFRSF6BF6WH68 1400 aa27.91■■■□□ 2.06
LIG1-216ENST00000598938 NPATQ14207 1427 aa27.91■■■□□ 2.06
LIG1-216ENST00000598938 LTBP4Q8N2S1 1624 aa27.9■■■□□ 2.06
LIG1-216ENST00000598938 ABCC5O15440 1437 aa27.9■■■□□ 2.06
LIG1-216ENST00000598938 NCOA1Q15788 1441 aa27.9■■■□□ 2.06
LIG1-216ENST00000598938 RRBP1Q9P2E9 1410 aaKnown RBP27.9■■■□□ 2.06
LIG1-216ENST00000598938 FAM50AQ14320 339 aaKnown RBP27.89■■■□□ 2.06
LIG1-216ENST00000598938 MAST1Q9Y2H9 1570 aa27.89■■■□□ 2.05
LIG1-216ENST00000598938 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.88■■■□□ 2.05
LIG1-216ENST00000598938 DAPK1P53355 1430 aa27.88■■■□□ 2.05
LIG1-216ENST00000598938 CROCC2H7BZ55 1655 aa27.87■■■□□ 2.05
LIG1-216ENST00000598938 TSPY4P0CV99 314 aa27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms