RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 RICTORQ6R327 1708 aa24.15■■□□□ 1.46
LIG1-215ENST00000597901 MAGI2Q86UL8 1455 aa24.14■■□□□ 1.46
LIG1-215ENST00000597901 YEATS2Q9ULM3 1422 aa24.14■■□□□ 1.45
LIG1-215ENST00000597901 ARHGAP5Q13017 1502 aa24.14■■□□□ 1.45
LIG1-215ENST00000597901 ZMYM4Q5VZL5 1548 aa24.11■■□□□ 1.45
LIG1-215ENST00000597901 MYO5CQ9NQX4 1742 aa24.11■■□□□ 1.45
LIG1-215ENST00000597901 MYT1LQ9UL68 1186 aa24.09■■□□□ 1.45
LIG1-215ENST00000597901 ZNF777Q9ULD5 760 aaPredicted RBP24.08■■□□□ 1.45
LIG1-215ENST00000597901 ZFYVE16Q7Z3T8 1539 aa24.08■■□□□ 1.45
LIG1-215ENST00000597901 HECW2Q9P2P5 1572 aa24.08■■□□□ 1.44
LIG1-215ENST00000597901 ARHGEF40Q8TER5 1519 aa24.07■■□□□ 1.44
LIG1-215ENST00000597901 MLECQ14165 292 aa24.06■■□□□ 1.44
LIG1-215ENST00000597901 MTUS2Q5JR59 1369 aa24.05■■□□□ 1.44
LIG1-215ENST00000597901 ATP10AO60312 1499 aa24.05■■□□□ 1.44
LIG1-215ENST00000597901 PTPRMP28827 1452 aa24.05■■□□□ 1.44
LIG1-215ENST00000597901 ZNF518AQ6AHZ1 1483 aa24.05■■□□□ 1.44
LIG1-215ENST00000597901 ADAMTSL3P82987 1691 aa24.04■■□□□ 1.44
LIG1-215ENST00000597901 GPATCH8Q9UKJ3 1502 aaKnown RBP24.04■■□□□ 1.44
LIG1-215ENST00000597901 CFDP1Q9UEE9 299 aaPredicted RBP24.03■■□□□ 1.44
LIG1-215ENST00000597901 TRAPPC8Q9Y2L5 1435 aa24.02■■□□□ 1.44
LIG1-215ENST00000597901 ARHGEF12Q9NZN5 1544 aa24.02■■□□□ 1.44
LIG1-215ENST00000597901 CDC42BPBQ9Y5S2 1711 aa24.01■■□□□ 1.43
LIG1-215ENST00000597901 HNRNPMP52272 730 aaKnown RBP eCLIP24.01■■□□□ 1.43
LIG1-215ENST00000597901 CCNB3Q8WWL7 1395 aa24.01■■□□□ 1.43
LIG1-215ENST00000597901 BCORL1Q5H9F3 1711 aa24■■□□□ 1.43
LIG1-215ENST00000597901 PREX2Q70Z35 1606 aa23.98■■□□□ 1.43
LIG1-215ENST00000597901 C9orf84Q5VXU9 1444 aa23.97■■□□□ 1.43
LIG1-215ENST00000597901 MLH3Q9UHC1 1453 aa23.96■■□□□ 1.43
LIG1-215ENST00000597901 PLPPR3Q6T4P5 718 aa23.95■■□□□ 1.42
LIG1-215ENST00000597901 KDM5CP41229 1560 aa23.95■■□□□ 1.42
LIG1-215ENST00000597901 ABCC1P33527 1531 aa23.94■■□□□ 1.42
LIG1-215ENST00000597901 MADDQ8WXG6 1647 aa23.93■■□□□ 1.42
LIG1-215ENST00000597901 CDC42BPAQ5VT25 1732 aa23.92■■□□□ 1.42
LIG1-215ENST00000597901 ZNF644Q9H582 1327 aaPredicted RBP23.91■■□□□ 1.42
LIG1-215ENST00000597901 SIGLEC1Q9BZZ2 1709 aa23.91■■□□□ 1.42
LIG1-215ENST00000597901 KIAA1107Q9UPP5 1409 aa23.91■■□□□ 1.42
LIG1-215ENST00000597901 SPAG9O60271 1321 aaKnown RBP23.9■■□□□ 1.42
LIG1-215ENST00000597901 VPS8Q8N3P4 1428 aa23.89■■□□□ 1.41
LIG1-215ENST00000597901 SAMD9LQ8IVG5 1584 aa23.86■■□□□ 1.41
LIG1-215ENST00000597901 EHBP1L1Q8N3D4 1523 aa23.86■■□□□ 1.41
LIG1-215ENST00000597901 PLEKHH2Q8IVE3 1493 aa23.86■■□□□ 1.41
LIG1-215ENST00000597901 ITSN2Q9NZM3 1697 aa23.84■■□□□ 1.41
LIG1-215ENST00000597901 DIP2CQ9Y2E4 1556 aa23.84■■□□□ 1.41
LIG1-215ENST00000597901 CEBPAP49715 358 aaPredicted RBP23.84■■□□□ 1.41
LIG1-215ENST00000597901 RIMS1Q86UR5 1692 aaKnown RBP23.83■■□□□ 1.41
LIG1-215ENST00000597901 ILDR1Q86SU0 546 aaPredicted RBP23.83■■□□□ 1.41
LIG1-215ENST00000597901 SYCP2Q9BX26 1530 aa23.83■■□□□ 1.41
LIG1-215ENST00000597901 KANK4Q5T7N3 995 aaPredicted RBP23.82■■□□□ 1.4
LIG1-215ENST00000597901 NCOA2Q15596 1464 aa23.81■■□□□ 1.4
LIG1-215ENST00000597901 REREQ9P2R6 1566 aa23.79■■□□□ 1.4
LIG1-215ENST00000597901 ESF1Q9H501 851 aaKnown RBP23.79■■□□□ 1.4
LIG1-215ENST00000597901 ABCA6Q8N139 1617 aa23.79■■□□□ 1.4
LIG1-215ENST00000597901 TIAM1Q13009 1591 aa23.78■■□□□ 1.4
LIG1-215ENST00000597901 AGLP35573 1532 aa23.78■■□□□ 1.4
LIG1-215ENST00000597901 KIDINS220Q9ULH0 1771 aa23.78■■□□□ 1.4
LIG1-215ENST00000597901 MBD5Q9P267 1494 aa23.77■■□□□ 1.4
LIG1-215ENST00000597901 RSPH4AQ5TD94 716 aa23.77■■□□□ 1.4
LIG1-215ENST00000597901 LRRC9Q6ZRR7 1453 aa23.76■■□□□ 1.39
LIG1-215ENST00000597901 HSPA2P54652 639 aa23.76■■□□□ 1.39
LIG1-215ENST00000597901 LMTK3Q96Q04 1460 aa23.75■■□□□ 1.39
LIG1-215ENST00000597901 APLP2Q06481 763 aa23.73■■□□□ 1.39
LIG1-215ENST00000597901 MAP3K1Q13233 1512 aa23.72■■□□□ 1.39
LIG1-215ENST00000597901 FER1L4A9Z1Z3 1794 aa23.7■■□□□ 1.39
LIG1-215ENST00000597901 ATP7AQ04656 1500 aa23.7■■□□□ 1.38
LIG1-215ENST00000597901 SUPT6HQ7KZ85 1726 aaKnown RBP23.7■■□□□ 1.38
LIG1-215ENST00000597901 A2MP01023 1474 aa23.68■■□□□ 1.38
LIG1-215ENST00000597901 RTEL1-TNFRSF6BF6WH68 1400 aa23.68■■□□□ 1.38
LIG1-215ENST00000597901 GGT6Q6P531 493 aa23.68■■□□□ 1.38
LIG1-215ENST00000597901 TSPY4P0CV99 314 aa23.67■■□□□ 1.38
LIG1-215ENST00000597901 TSPY10P0CW01 314 aa23.67■■□□□ 1.38
LIG1-215ENST00000597901 CAMSAP2Q08AD1 1489 aa23.64■■□□□ 1.38
LIG1-215ENST00000597901 DHX29Q7Z478 1369 aaKnown RBP23.64■■□□□ 1.37
LIG1-215ENST00000597901 CNTLNQ9NXG0 1405 aa23.63■■□□□ 1.37
LIG1-215ENST00000597901 INO80Q9ULG1 1556 aaPredicted RBP23.63■■□□□ 1.37
LIG1-215ENST00000597901 PPP6R1Q9UPN7 881 aa23.63■■□□□ 1.37
LIG1-215ENST00000597901 ZMYM3Q14202 1370 aa23.63■■□□□ 1.37
LIG1-215ENST00000597901 CCDC141Q6ZP82 1450 aa23.62■■□□□ 1.37
LIG1-215ENST00000597901 KIF3BO15066 747 aa23.59■■□□□ 1.37
LIG1-215ENST00000597901 FBXO41Q8TF61 875 aa23.58■■□□□ 1.37
LIG1-215ENST00000597901 MYOM3Q5VTT5 1437 aa23.58■■□□□ 1.36
LIG1-215ENST00000597901 MIA2Q96PC5 1412 aa23.58■■□□□ 1.36
LIG1-215ENST00000597901 PLXNC1O60486 1568 aa23.57■■□□□ 1.36
LIG1-215ENST00000597901 UHRF1BP1Q6BDS2 1440 aa23.56■■□□□ 1.36
LIG1-215ENST00000597901 ARHGEF5Q12774 1597 aa23.52■■□□□ 1.36
LIG1-215ENST00000597901 PREX1Q8TCU6 1659 aa23.52■■□□□ 1.36
LIG1-215ENST00000597901 C3P01024 1663 aa23.51■■□□□ 1.35
LIG1-215ENST00000597901 SETD1BQ9UPS6 1966 aaKnown RBP23.51■■□□□ 1.35
LIG1-215ENST00000597901 ADGBQ8N7X0 1667 aa23.51■■□□□ 1.35
LIG1-215ENST00000597901 DMRT2Q9Y5R5 561 aa23.49■■□□□ 1.35
LIG1-215ENST00000597901 NPATQ14207 1427 aa23.49■■□□□ 1.35
LIG1-215ENST00000597901 WASHC2CQ9Y4E1 1318 aa23.47■■□□□ 1.35
LIG1-215ENST00000597901 PTPRKQ15262 1439 aa23.45■■□□□ 1.34
LIG1-215ENST00000597901 MROH2AA6NES4 1674 aa23.42■■□□□ 1.34
LIG1-215ENST00000597901 FBXO31Q5XUX0 539 aaPredicted RBP23.42■■□□□ 1.34
LIG1-215ENST00000597901 ABCC5O15440 1437 aa23.42■■□□□ 1.34
LIG1-215ENST00000597901 CLTCQ00610 1675 aaKnown RBP23.41■■□□□ 1.34
LIG1-215ENST00000597901 RRP7BPQ9NSQ0 103 aa23.4■■□□□ 1.34
LIG1-215ENST00000597901 FGD6Q6ZV73 1430 aa23.4■■□□□ 1.34
LIG1-215ENST00000597901 MAST1Q9Y2H9 1570 aa23.39■■□□□ 1.33
LIG1-215ENST00000597901 CERKQ8TCT0 537 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms