RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 SCAPERQ9BY12 1400 aa27.17■■□□□ 1.94
SHKBP1-212ENST00000596163 CCNB3Q8WWL7 1395 aa27.17■■□□□ 1.94
SHKBP1-212ENST00000596163 TIAM1Q13009 1591 aa27.15■■□□□ 1.94
SHKBP1-212ENST00000596163 MAP3K1Q13233 1512 aa27.15■■□□□ 1.94
SHKBP1-212ENST00000596163 CFDP1Q9UEE9 299 aaPredicted RBP27.12■■□□□ 1.93
SHKBP1-212ENST00000596163 GPATCH8Q9UKJ3 1502 aaKnown RBP27.11■■□□□ 1.93
SHKBP1-212ENST00000596163 ZNF777Q9ULD5 760 aaPredicted RBP27.1■■□□□ 1.93
SHKBP1-212ENST00000596163 PREX2Q70Z35 1606 aa27.09■■□□□ 1.93
SHKBP1-212ENST00000596163 LRRC9Q6ZRR7 1453 aa27.08■■□□□ 1.93
SHKBP1-212ENST00000596163 POGZQ7Z3K3 1410 aa27.07■■□□□ 1.92
SHKBP1-212ENST00000596163 CDC42BPBQ9Y5S2 1711 aa27.06■■□□□ 1.92
SHKBP1-212ENST00000596163 KANK4Q5T7N3 995 aaPredicted RBP27.04■■□□□ 1.92
SHKBP1-212ENST00000596163 NCOA2Q15596 1464 aa27.04■■□□□ 1.92
SHKBP1-212ENST00000596163 FRMPD1Q5SYB0 1578 aa27.04■■□□□ 1.92
SHKBP1-212ENST00000596163 CDC42BPAQ5VT25 1732 aa27.03■■□□□ 1.92
SHKBP1-212ENST00000596163 MAGI2Q86UL8 1455 aa27.03■■□□□ 1.92
SHKBP1-212ENST00000596163 SUPT6HQ7KZ85 1726 aaKnown RBP27.02■■□□□ 1.92
SHKBP1-212ENST00000596163 ZNF518AQ6AHZ1 1483 aa27.02■■□□□ 1.92
SHKBP1-212ENST00000596163 RICTORQ6R327 1708 aa27.02■■□□□ 1.92
SHKBP1-212ENST00000596163 AFAP1Q8N556 730 aa27.01■■□□□ 1.91
SHKBP1-212ENST00000596163 PLEKHH2Q8IVE3 1493 aa27■■□□□ 1.91
SHKBP1-212ENST00000596163 ZMYM4Q5VZL5 1548 aa27■■□□□ 1.91
SHKBP1-212ENST00000596163 MYT1LQ9UL68 1186 aa26.99■■□□□ 1.91
SHKBP1-212ENST00000596163 KIAA1107Q9UPP5 1409 aa26.98■■□□□ 1.91
SHKBP1-212ENST00000596163 ABCC1P33527 1531 aa26.96■■□□□ 1.91
SHKBP1-212ENST00000596163 KDM4FA0A1W2PPD8 638 aa26.95■■□□□ 1.9
SHKBP1-212ENST00000596163 HNRNPMP52272 730 aaKnown RBP eCLIP26.95■■□□□ 1.9
SHKBP1-212ENST00000596163 ITSN2Q9NZM3 1697 aa26.94■■□□□ 1.9
SHKBP1-212ENST00000596163 ZFYVE16Q7Z3T8 1539 aa26.94■■□□□ 1.9
SHKBP1-212ENST00000596163 ARID4BQ4LE39 1312 aaPredicted RBP26.93■■□□□ 1.9
SHKBP1-212ENST00000596163 TRAPPC8Q9Y2L5 1435 aa26.93■■□□□ 1.9
SHKBP1-212ENST00000596163 ARHGEF12Q9NZN5 1544 aa26.93■■□□□ 1.9
SHKBP1-212ENST00000596163 SAMD9LQ8IVG5 1584 aa26.92■■□□□ 1.9
SHKBP1-212ENST00000596163 YEATS2Q9ULM3 1422 aa26.9■■□□□ 1.9
SHKBP1-212ENST00000596163 ARHGEF40Q8TER5 1519 aa26.9■■□□□ 1.9
SHKBP1-212ENST00000596163 ZNF644Q9H582 1327 aaPredicted RBP26.9■■□□□ 1.9
SHKBP1-212ENST00000596163 KDM5CP41229 1560 aa26.89■■□□□ 1.9
SHKBP1-212ENST00000596163 RSPH4AQ5TD94 716 aa26.89■■□□□ 1.9
SHKBP1-212ENST00000596163 MLH3Q9UHC1 1453 aa26.88■■□□□ 1.89
SHKBP1-212ENST00000596163 SYCP2Q9BX26 1530 aa26.87■■□□□ 1.89
SHKBP1-212ENST00000596163 SPAG9O60271 1321 aaKnown RBP26.87■■□□□ 1.89
SHKBP1-212ENST00000596163 ATP10AO60312 1499 aa26.87■■□□□ 1.89
SHKBP1-212ENST00000596163 MYOM3Q5VTT5 1437 aa26.84■■□□□ 1.89
SHKBP1-212ENST00000596163 MIA2Q96PC5 1412 aa26.83■■□□□ 1.89
SHKBP1-212ENST00000596163 HECW2Q9P2P5 1572 aa26.83■■□□□ 1.89
SHKBP1-212ENST00000596163 C9orf84Q5VXU9 1444 aa26.82■■□□□ 1.88
SHKBP1-212ENST00000596163 CAMSAP2Q08AD1 1489 aa26.8■■□□□ 1.88
SHKBP1-212ENST00000596163 MBD5Q9P267 1494 aa26.79■■□□□ 1.88
SHKBP1-212ENST00000596163 TSPY4P0CV99 314 aa26.76■■□□□ 1.87
SHKBP1-212ENST00000596163 TSPY10P0CW01 314 aa26.76■■□□□ 1.87
SHKBP1-212ENST00000596163 CCDC141Q6ZP82 1450 aa26.73■■□□□ 1.87
SHKBP1-212ENST00000596163 RTEL1-TNFRSF6BF6WH68 1400 aa26.73■■□□□ 1.87
SHKBP1-212ENST00000596163 DIP2CQ9Y2E4 1556 aa26.71■■□□□ 1.87
SHKBP1-212ENST00000596163 MLECQ14165 292 aa26.71■■□□□ 1.87
SHKBP1-212ENST00000596163 ATP7AQ04656 1500 aa26.7■■□□□ 1.86
SHKBP1-212ENST00000596163 KIDINS220Q9ULH0 1771 aa26.69■■□□□ 1.86
SHKBP1-212ENST00000596163 REREQ9P2R6 1566 aa26.69■■□□□ 1.86
SHKBP1-212ENST00000596163 ABCA6Q8N139 1617 aa26.68■■□□□ 1.86
SHKBP1-212ENST00000596163 ARHGEF5Q12774 1597 aa26.67■■□□□ 1.86
SHKBP1-212ENST00000596163 FGD6Q6ZV73 1430 aa26.67■■□□□ 1.86
SHKBP1-212ENST00000596163 BCORL1Q5H9F3 1711 aa26.67■■□□□ 1.86
SHKBP1-212ENST00000596163 ADAMTSL3P82987 1691 aa26.65■■□□□ 1.86
SHKBP1-212ENST00000596163 INO80Q9ULG1 1556 aaPredicted RBP26.64■■□□□ 1.86
SHKBP1-212ENST00000596163 AGLP35573 1532 aa26.64■■□□□ 1.85
SHKBP1-212ENST00000596163 A2MP01023 1474 aa26.62■■□□□ 1.85
SHKBP1-212ENST00000596163 PTPN23Q9H3S7 1636 aa26.61■■□□□ 1.85
SHKBP1-212ENST00000596163 ESF1Q9H501 851 aaKnown RBP26.6■■□□□ 1.85
SHKBP1-212ENST00000596163 TCOF1Q13428 1488 aaKnown RBP26.6■■□□□ 1.85
SHKBP1-212ENST00000596163 PPARGC1BQ86YN6 1023 aaKnown RBP26.59■■□□□ 1.85
SHKBP1-212ENST00000596163 SIGLEC1Q9BZZ2 1709 aa26.58■■□□□ 1.85
SHKBP1-212ENST00000596163 DHX29Q7Z478 1369 aaKnown RBP26.58■■□□□ 1.84
SHKBP1-212ENST00000596163 PTPRMP28827 1452 aa26.57■■□□□ 1.84
SHKBP1-212ENST00000596163 FAM50AQ14320 339 aaKnown RBP26.57■■□□□ 1.84
SHKBP1-212ENST00000596163 MADDQ8WXG6 1647 aa26.56■■□□□ 1.84
SHKBP1-212ENST00000596163 ABCC5O15440 1437 aa26.53■■□□□ 1.84
SHKBP1-212ENST00000596163 ADGBQ8N7X0 1667 aa26.53■■□□□ 1.84
SHKBP1-212ENST00000596163 MAST1Q9Y2H9 1570 aa26.52■■□□□ 1.84
SHKBP1-212ENST00000596163 PPP6R1Q9UPN7 881 aa26.51■■□□□ 1.83
SHKBP1-212ENST00000596163 PLXNC1O60486 1568 aa26.5■■□□□ 1.83
SHKBP1-212ENST00000596163 DAPK1P53355 1430 aa26.5■■□□□ 1.83
SHKBP1-212ENST00000596163 GGT6Q6P531 493 aa26.5■■□□□ 1.83
SHKBP1-212ENST00000596163 SHANK2Q9UPX8 1470 aa26.49■■□□□ 1.83
SHKBP1-212ENST00000596163 KIF3BO15066 747 aa26.48■■□□□ 1.83
SHKBP1-212ENST00000596163 RIMS1Q86UR5 1692 aaKnown RBP26.47■■□□□ 1.83
SHKBP1-212ENST00000596163 CNTLNQ9NXG0 1405 aa26.47■■□□□ 1.83
SHKBP1-212ENST00000596163 PLPPR3Q6T4P5 718 aa26.46■■□□□ 1.83
SHKBP1-212ENST00000596163 DNMT1P26358 1616 aaKnown RBP26.45■■□□□ 1.82
SHKBP1-212ENST00000596163 FER1L4A9Z1Z3 1794 aa26.45■■□□□ 1.82
SHKBP1-212ENST00000596163 CHIC2Q9UKJ5 165 aa26.44■■□□□ 1.82
SHKBP1-212ENST00000596163 ANKRD30AQ9BXX3 1397 aa26.44■■□□□ 1.82
SHKBP1-212ENST00000596163 RRP7BPQ9NSQ0 103 aa26.42■■□□□ 1.82
SHKBP1-212ENST00000596163 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.41■■□□□ 1.82
SHKBP1-212ENST00000596163 KIF15Q9NS87 1388 aa26.41■■□□□ 1.82
SHKBP1-212ENST00000596163 CEBPAP49715 358 aaPredicted RBP26.39■■□□□ 1.82
SHKBP1-212ENST00000596163 DUOX2Q9NRD8 1548 aa26.39■■□□□ 1.81
SHKBP1-212ENST00000596163 CROCC2H7BZ55 1655 aa26.37■■□□□ 1.81
SHKBP1-212ENST00000596163 ZMYM3Q14202 1370 aa26.34■■□□□ 1.81
SHKBP1-212ENST00000596163 NCOA1Q15788 1441 aa26.34■■□□□ 1.81
SHKBP1-212ENST00000596163 WASHC2CQ9Y4E1 1318 aa26.34■■□□□ 1.81
SHKBP1-212ENST00000596163 ERBINQ96RT1 1412 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms