RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 TIAM1Q13009 1591 aa17.69■□□□□ 0.42
VRK3-210ENST00000596121 ADGRL1O94910 1474 aa17.69■□□□□ 0.42
VRK3-210ENST00000596121 CFAP74Q9C0B2 1584 aa17.68■□□□□ 0.42
VRK3-210ENST00000596121 KDM4FA0A1W2PPD8 638 aa17.67■□□□□ 0.42
VRK3-210ENST00000596121 PREX2Q70Z35 1606 aa17.67■□□□□ 0.42
VRK3-210ENST00000596121 EHBP1L1Q8N3D4 1523 aa17.67■□□□□ 0.42
VRK3-210ENST00000596121 CDC42BPAQ5VT25 1732 aa17.67■□□□□ 0.42
VRK3-210ENST00000596121 RICTORQ6R327 1708 aa17.67■□□□□ 0.42
VRK3-210ENST00000596121 ARHGEF12Q9NZN5 1544 aa17.66■□□□□ 0.42
VRK3-210ENST00000596121 LRRC9Q6ZRR7 1453 aa17.64■□□□□ 0.41
VRK3-210ENST00000596121 CCNB3Q8WWL7 1395 aa17.64■□□□□ 0.41
VRK3-210ENST00000596121 POGZQ7Z3K3 1410 aa17.64■□□□□ 0.41
VRK3-210ENST00000596121 MAP3K1Q13233 1512 aa17.63■□□□□ 0.41
VRK3-210ENST00000596121 AFAP1Q8N556 730 aa17.63■□□□□ 0.41
VRK3-210ENST00000596121 ZNF777Q9ULD5 760 aaPredicted RBP17.62■□□□□ 0.41
VRK3-210ENST00000596121 NCOA2Q15596 1464 aa17.62■□□□□ 0.41
VRK3-210ENST00000596121 CFDP1Q9UEE9 299 aaPredicted RBP17.61■□□□□ 0.41
VRK3-210ENST00000596121 YEATS2Q9ULM3 1422 aa17.61■□□□□ 0.41
VRK3-210ENST00000596121 TRAPPC8Q9Y2L5 1435 aa17.61■□□□□ 0.41
VRK3-210ENST00000596121 ZNF644Q9H582 1327 aaPredicted RBP17.6■□□□□ 0.41
VRK3-210ENST00000596121 ZMYM4Q5VZL5 1548 aa17.6■□□□□ 0.41
VRK3-210ENST00000596121 SAMD9LQ8IVG5 1584 aa17.59■□□□□ 0.41
VRK3-210ENST00000596121 ABCC1P33527 1531 aa17.59■□□□□ 0.41
VRK3-210ENST00000596121 HNRNPMP52272 730 aaKnown RBP eCLIP17.58■□□□□ 0.4
VRK3-210ENST00000596121 SUPT6HQ7KZ85 1726 aaKnown RBP17.56■□□□□ 0.4
VRK3-210ENST00000596121 KDM5CP41229 1560 aa17.55■□□□□ 0.4
VRK3-210ENST00000596121 ARHGEF40Q8TER5 1519 aa17.55■□□□□ 0.4
VRK3-210ENST00000596121 ZNF518AQ6AHZ1 1483 aa17.55■□□□□ 0.4
VRK3-210ENST00000596121 ZFYVE16Q7Z3T8 1539 aa17.54■□□□□ 0.4
VRK3-210ENST00000596121 MAGI2Q86UL8 1455 aa17.54■□□□□ 0.4
VRK3-210ENST00000596121 ITSN2Q9NZM3 1697 aa17.54■□□□□ 0.4
VRK3-210ENST00000596121 SYCP2Q9BX26 1530 aa17.53■□□□□ 0.4
VRK3-210ENST00000596121 KIAA1107Q9UPP5 1409 aa17.53■□□□□ 0.4
VRK3-210ENST00000596121 SIGLEC1Q9BZZ2 1709 aa17.52■□□□□ 0.4
VRK3-210ENST00000596121 APLP2Q06481 763 aa17.52■□□□□ 0.4
VRK3-210ENST00000596121 AEBP2Q6ZN18 517 aaPredicted RBP17.52■□□□□ 0.4
VRK3-210ENST00000596121 MBD5Q9P267 1494 aa17.5■□□□□ 0.39
VRK3-210ENST00000596121 MLH3Q9UHC1 1453 aa17.5■□□□□ 0.39
VRK3-210ENST00000596121 ATP10AO60312 1499 aa17.49■□□□□ 0.39
VRK3-210ENST00000596121 PLEKHH2Q8IVE3 1493 aa17.49■□□□□ 0.39
VRK3-210ENST00000596121 ARID4BQ4LE39 1312 aaPredicted RBP17.47■□□□□ 0.39
VRK3-210ENST00000596121 HECW2Q9P2P5 1572 aa17.47■□□□□ 0.39
VRK3-210ENST00000596121 DIP2CQ9Y2E4 1556 aa17.46■□□□□ 0.39
VRK3-210ENST00000596121 CAMSAP2Q08AD1 1489 aa17.46■□□□□ 0.39
VRK3-210ENST00000596121 MYT1LQ9UL68 1186 aa17.46■□□□□ 0.39
VRK3-210ENST00000596121 MYOM3Q5VTT5 1437 aa17.46■□□□□ 0.39
VRK3-210ENST00000596121 KIDINS220Q9ULH0 1771 aa17.45■□□□□ 0.38
VRK3-210ENST00000596121 ABCA6Q8N139 1617 aa17.45■□□□□ 0.38
VRK3-210ENST00000596121 SPAG9O60271 1321 aaKnown RBP17.45■□□□□ 0.38
VRK3-210ENST00000596121 C9orf84Q5VXU9 1444 aa17.44■□□□□ 0.38
VRK3-210ENST00000596121 ADAMTSL3P82987 1691 aa17.43■□□□□ 0.38
VRK3-210ENST00000596121 BCORL1Q5H9F3 1711 aa17.42■□□□□ 0.38
VRK3-210ENST00000596121 MLECQ14165 292 aa17.42■□□□□ 0.38
VRK3-210ENST00000596121 MIA2Q96PC5 1412 aa17.41■□□□□ 0.38
VRK3-210ENST00000596121 PPARGC1BQ86YN6 1023 aaKnown RBP17.4■□□□□ 0.38
VRK3-210ENST00000596121 INO80Q9ULG1 1556 aaPredicted RBP17.4■□□□□ 0.38
VRK3-210ENST00000596121 ATP7AQ04656 1500 aa17.39■□□□□ 0.37
VRK3-210ENST00000596121 REREQ9P2R6 1566 aa17.38■□□□□ 0.37
VRK3-210ENST00000596121 CCDC141Q6ZP82 1450 aa17.37■□□□□ 0.37
VRK3-210ENST00000596121 ARHGEF5Q12774 1597 aa17.36■□□□□ 0.37
VRK3-210ENST00000596121 MADDQ8WXG6 1647 aa17.36■□□□□ 0.37
VRK3-210ENST00000596121 RSPH4AQ5TD94 716 aa17.36■□□□□ 0.37
VRK3-210ENST00000596121 RTEL1-TNFRSF6BF6WH68 1400 aa17.36■□□□□ 0.37
VRK3-210ENST00000596121 FGD6Q6ZV73 1430 aa17.36■□□□□ 0.37
VRK3-210ENST00000596121 PTPRMP28827 1452 aa17.35■□□□□ 0.37
VRK3-210ENST00000596121 AGLP35573 1532 aa17.34■□□□□ 0.37
VRK3-210ENST00000596121 PTPN23Q9H3S7 1636 aa17.33■□□□□ 0.37
VRK3-210ENST00000596121 TCOF1Q13428 1488 aaKnown RBP17.33■□□□□ 0.37
VRK3-210ENST00000596121 A2MP01023 1474 aa17.32■□□□□ 0.36
VRK3-210ENST00000596121 ABCC5O15440 1437 aa17.31■□□□□ 0.36
VRK3-210ENST00000596121 PLXNC1O60486 1568 aa17.31■□□□□ 0.36
VRK3-210ENST00000596121 RIMS1Q86UR5 1692 aaKnown RBP17.3■□□□□ 0.36
VRK3-210ENST00000596121 TSPY4P0CV99 314 aa17.3■□□□□ 0.36
VRK3-210ENST00000596121 TSPY10P0CW01 314 aa17.3■□□□□ 0.36
VRK3-210ENST00000596121 DHX29Q7Z478 1369 aaKnown RBP17.28■□□□□ 0.36
VRK3-210ENST00000596121 MAST1Q9Y2H9 1570 aa17.28■□□□□ 0.36
VRK3-210ENST00000596121 CEBPAP49715 358 aaPredicted RBP17.27■□□□□ 0.36
VRK3-210ENST00000596121 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
VRK3-210ENST00000596121 ADGBQ8N7X0 1667 aa17.26■□□□□ 0.35
VRK3-210ENST00000596121 DAPK1P53355 1430 aa17.26■□□□□ 0.35
VRK3-210ENST00000596121 FER1L4A9Z1Z3 1794 aa17.25■□□□□ 0.35
VRK3-210ENST00000596121 FAM50AQ14320 339 aaKnown RBP17.25■□□□□ 0.35
VRK3-210ENST00000596121 DNMT1P26358 1616 aaKnown RBP17.23■□□□□ 0.35
VRK3-210ENST00000596121 GGT6Q6P531 493 aa17.23■□□□□ 0.35
VRK3-210ENST00000596121 CHIC2Q9UKJ5 165 aa17.22■□□□□ 0.35
VRK3-210ENST00000596121 SHANK2Q9UPX8 1470 aa17.22■□□□□ 0.35
VRK3-210ENST00000596121 KIF3BO15066 747 aa17.21■□□□□ 0.35
VRK3-210ENST00000596121 PTPRKQ15262 1439 aa17.21■□□□□ 0.34
VRK3-210ENST00000596121 CROCC2H7BZ55 1655 aa17.2■□□□□ 0.34
VRK3-210ENST00000596121 RRP7BPQ9NSQ0 103 aa17.2■□□□□ 0.34
VRK3-210ENST00000596121 KIF15Q9NS87 1388 aa17.17■□□□□ 0.34
VRK3-210ENST00000596121 NCOA1Q15788 1441 aa17.16■□□□□ 0.34
VRK3-210ENST00000596121 ZMYM3Q14202 1370 aa17.15■□□□□ 0.34
VRK3-210ENST00000596121 CNTLNQ9NXG0 1405 aa17.15■□□□□ 0.34
VRK3-210ENST00000596121 ESF1Q9H501 851 aaKnown RBP17.15■□□□□ 0.34
VRK3-210ENST00000596121 PPP6R1Q9UPN7 881 aa17.15■□□□□ 0.34
VRK3-210ENST00000596121 DUOX2Q9NRD8 1548 aa17.15■□□□□ 0.34
VRK3-210ENST00000596121 C3P01024 1663 aa17.14■□□□□ 0.33
VRK3-210ENST00000596121 CLTCQ00610 1675 aaKnown RBP17.13■□□□□ 0.33
VRK3-210ENST00000596121 ADGRL2O95490 1459 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms