RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 DENND4BO75064 1496 aaPredicted RBP23.64■■□□□ 1.38
UPF1-202ENST00000594243 ADGRL1O94910 1474 aa23.62■■□□□ 1.37
UPF1-202ENST00000594243 CCNB3Q8WWL7 1395 aa23.62■■□□□ 1.37
UPF1-202ENST00000594243 SCAPERQ9BY12 1400 aa23.61■■□□□ 1.37
UPF1-202ENST00000594243 GPATCH8Q9UKJ3 1502 aaKnown RBP23.6■■□□□ 1.37
UPF1-202ENST00000594243 PREX2Q70Z35 1606 aa23.59■■□□□ 1.37
UPF1-202ENST00000594243 CDC42BPBQ9Y5S2 1711 aa23.59■■□□□ 1.37
UPF1-202ENST00000594243 LRRC9Q6ZRR7 1453 aa23.59■■□□□ 1.37
UPF1-202ENST00000594243 CDC42BPAQ5VT25 1732 aa23.57■■□□□ 1.36
UPF1-202ENST00000594243 CFDP1Q9UEE9 299 aaPredicted RBP23.57■■□□□ 1.36
UPF1-202ENST00000594243 KANK4Q5T7N3 995 aaPredicted RBP23.56■■□□□ 1.36
UPF1-202ENST00000594243 ZNF777Q9ULD5 760 aaPredicted RBP23.55■■□□□ 1.36
UPF1-202ENST00000594243 SUPT6HQ7KZ85 1726 aaKnown RBP23.54■■□□□ 1.36
UPF1-202ENST00000594243 RICTORQ6R327 1708 aa23.53■■□□□ 1.36
UPF1-202ENST00000594243 FRMPD1Q5SYB0 1578 aa23.53■■□□□ 1.36
UPF1-202ENST00000594243 POGZQ7Z3K3 1410 aa23.52■■□□□ 1.36
UPF1-202ENST00000594243 NCOA2Q15596 1464 aa23.52■■□□□ 1.36
UPF1-202ENST00000594243 ZNF518AQ6AHZ1 1483 aa23.49■■□□□ 1.35
UPF1-202ENST00000594243 KDM4FA0A1W2PPD8 638 aa23.49■■□□□ 1.35
UPF1-202ENST00000594243 MAGI2Q86UL8 1455 aa23.49■■□□□ 1.35
UPF1-202ENST00000594243 AFAP1Q8N556 730 aa23.48■■□□□ 1.35
UPF1-202ENST00000594243 ITSN2Q9NZM3 1697 aa23.48■■□□□ 1.35
UPF1-202ENST00000594243 ABCC1P33527 1531 aa23.47■■□□□ 1.35
UPF1-202ENST00000594243 ZMYM4Q5VZL5 1548 aa23.47■■□□□ 1.35
UPF1-202ENST00000594243 PLEKHH2Q8IVE3 1493 aa23.46■■□□□ 1.35
UPF1-202ENST00000594243 SAMD9LQ8IVG5 1584 aa23.44■■□□□ 1.34
UPF1-202ENST00000594243 KIAA1107Q9UPP5 1409 aa23.44■■□□□ 1.34
UPF1-202ENST00000594243 HNRNPMP52272 730 aaKnown RBP eCLIP23.44■■□□□ 1.34
UPF1-202ENST00000594243 MYT1LQ9UL68 1186 aa23.44■■□□□ 1.34
UPF1-202ENST00000594243 ARHGEF12Q9NZN5 1544 aa23.43■■□□□ 1.34
UPF1-202ENST00000594243 TRAPPC8Q9Y2L5 1435 aa23.42■■□□□ 1.34
UPF1-202ENST00000594243 ZFYVE16Q7Z3T8 1539 aa23.41■■□□□ 1.34
UPF1-202ENST00000594243 KDM5CP41229 1560 aa23.4■■□□□ 1.34
UPF1-202ENST00000594243 ZNF644Q9H582 1327 aaPredicted RBP23.39■■□□□ 1.34
UPF1-202ENST00000594243 YEATS2Q9ULM3 1422 aa23.39■■□□□ 1.33
UPF1-202ENST00000594243 ARHGEF40Q8TER5 1519 aa23.38■■□□□ 1.33
UPF1-202ENST00000594243 SYCP2Q9BX26 1530 aa23.38■■□□□ 1.33
UPF1-202ENST00000594243 MLH3Q9UHC1 1453 aa23.37■■□□□ 1.33
UPF1-202ENST00000594243 RSPH4AQ5TD94 716 aa23.37■■□□□ 1.33
UPF1-202ENST00000594243 ARID4BQ4LE39 1312 aaPredicted RBP23.36■■□□□ 1.33
UPF1-202ENST00000594243 MYOM3Q5VTT5 1437 aa23.35■■□□□ 1.33
UPF1-202ENST00000594243 ATP10AO60312 1499 aa23.35■■□□□ 1.33
UPF1-202ENST00000594243 HECW2Q9P2P5 1572 aa23.35■■□□□ 1.33
UPF1-202ENST00000594243 SPAG9O60271 1321 aaKnown RBP23.34■■□□□ 1.33
UPF1-202ENST00000594243 MIA2Q96PC5 1412 aa23.34■■□□□ 1.33
UPF1-202ENST00000594243 CAMSAP2Q08AD1 1489 aa23.32■■□□□ 1.32
UPF1-202ENST00000594243 MBD5Q9P267 1494 aa23.31■■□□□ 1.32
UPF1-202ENST00000594243 C9orf84Q5VXU9 1444 aa23.3■■□□□ 1.32
UPF1-202ENST00000594243 TSPY4P0CV99 314 aa23.26■■□□□ 1.31
UPF1-202ENST00000594243 TSPY10P0CW01 314 aa23.26■■□□□ 1.31
UPF1-202ENST00000594243 KIDINS220Q9ULH0 1771 aa23.25■■□□□ 1.31
UPF1-202ENST00000594243 DIP2CQ9Y2E4 1556 aa23.25■■□□□ 1.31
UPF1-202ENST00000594243 CCDC141Q6ZP82 1450 aa23.24■■□□□ 1.31
UPF1-202ENST00000594243 RTEL1-TNFRSF6BF6WH68 1400 aa23.24■■□□□ 1.31
UPF1-202ENST00000594243 ATP7AQ04656 1500 aa23.23■■□□□ 1.31
UPF1-202ENST00000594243 ABCA6Q8N139 1617 aa23.22■■□□□ 1.31
UPF1-202ENST00000594243 ARHGEF5Q12774 1597 aa23.22■■□□□ 1.31
UPF1-202ENST00000594243 REREQ9P2R6 1566 aa23.22■■□□□ 1.31
UPF1-202ENST00000594243 FGD6Q6ZV73 1430 aa23.21■■□□□ 1.31
UPF1-202ENST00000594243 BCORL1Q5H9F3 1711 aa23.21■■□□□ 1.31
UPF1-202ENST00000594243 INO80Q9ULG1 1556 aaPredicted RBP23.2■■□□□ 1.3
UPF1-202ENST00000594243 MLECQ14165 292 aa23.19■■□□□ 1.3
UPF1-202ENST00000594243 ADAMTSL3P82987 1691 aa23.18■■□□□ 1.3
UPF1-202ENST00000594243 PTPN23Q9H3S7 1636 aa23.18■■□□□ 1.3
UPF1-202ENST00000594243 SIGLEC1Q9BZZ2 1709 aa23.17■■□□□ 1.3
UPF1-202ENST00000594243 PPARGC1BQ86YN6 1023 aaKnown RBP23.17■■□□□ 1.3
UPF1-202ENST00000594243 TCOF1Q13428 1488 aaKnown RBP23.16■■□□□ 1.3
UPF1-202ENST00000594243 AGLP35573 1532 aa23.15■■□□□ 1.3
UPF1-202ENST00000594243 A2MP01023 1474 aa23.14■■□□□ 1.29
UPF1-202ENST00000594243 FAM50AQ14320 339 aaKnown RBP23.11■■□□□ 1.29
UPF1-202ENST00000594243 ADGBQ8N7X0 1667 aa23.11■■□□□ 1.29
UPF1-202ENST00000594243 MADDQ8WXG6 1647 aa23.1■■□□□ 1.29
UPF1-202ENST00000594243 DHX29Q7Z478 1369 aaKnown RBP23.1■■□□□ 1.29
UPF1-202ENST00000594243 MAST1Q9Y2H9 1570 aa23.1■■□□□ 1.29
UPF1-202ENST00000594243 PTPRMP28827 1452 aa23.09■■□□□ 1.29
UPF1-202ENST00000594243 ABCC5O15440 1437 aa23.08■■□□□ 1.29
UPF1-202ENST00000594243 ESF1Q9H501 851 aaKnown RBP23.08■■□□□ 1.29
UPF1-202ENST00000594243 DAPK1P53355 1430 aa23.08■■□□□ 1.28
UPF1-202ENST00000594243 PLXNC1O60486 1568 aa23.06■■□□□ 1.28
UPF1-202ENST00000594243 SHANK2Q9UPX8 1470 aa23.05■■□□□ 1.28
UPF1-202ENST00000594243 DNMT1P26358 1616 aaKnown RBP23.04■■□□□ 1.28
UPF1-202ENST00000594243 RIMS1Q86UR5 1692 aaKnown RBP23.03■■□□□ 1.28
UPF1-202ENST00000594243 GGT6Q6P531 493 aa23.03■■□□□ 1.28
UPF1-202ENST00000594243 FER1L4A9Z1Z3 1794 aa23.02■■□□□ 1.28
UPF1-202ENST00000594243 PPP6R1Q9UPN7 881 aa23.02■■□□□ 1.28
UPF1-202ENST00000594243 KIF3BO15066 747 aa23.01■■□□□ 1.27
UPF1-202ENST00000594243 CHIC2Q9UKJ5 165 aa23■■□□□ 1.27
UPF1-202ENST00000594243 CROCC2H7BZ55 1655 aa23■■□□□ 1.27
UPF1-202ENST00000594243 RRP7BPQ9NSQ0 103 aa22.99■■□□□ 1.27
UPF1-202ENST00000594243 PLPPR3Q6T4P5 718 aa22.98■■□□□ 1.27
UPF1-202ENST00000594243 ANKRD30AQ9BXX3 1397 aa22.98■■□□□ 1.27
UPF1-202ENST00000594243 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.98■■□□□ 1.27
UPF1-202ENST00000594243 CNTLNQ9NXG0 1405 aa22.98■■□□□ 1.27
UPF1-202ENST00000594243 DUOX2Q9NRD8 1548 aa22.95■■□□□ 1.26
UPF1-202ENST00000594243 KIF15Q9NS87 1388 aa22.95■■□□□ 1.26
UPF1-202ENST00000594243 NCOA1Q15788 1441 aa22.93■■□□□ 1.26
UPF1-202ENST00000594243 CEBPAP49715 358 aaPredicted RBP22.93■■□□□ 1.26
UPF1-202ENST00000594243 RRBP1Q9P2E9 1410 aaKnown RBP22.91■■□□□ 1.26
UPF1-202ENST00000594243 ADGRL2O95490 1459 aa22.91■■□□□ 1.26
UPF1-202ENST00000594243 ERBINQ96RT1 1412 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms