RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 TROQ12816 1431 aaPredicted RBP39.3■■■■□ 3.88
LSM4-202ENST00000593564 EFCAB2Q5VUJ9 269 aa39.27■■■■□ 3.88
LSM4-202ENST00000593564 MYO5CQ9NQX4 1742 aa39.26■■■■□ 3.88
LSM4-202ENST00000593564 KIF14Q15058 1648 aa39.26■■■■□ 3.88
LSM4-202ENST00000593564 CLIP1P30622 1438 aa39.23■■■■□ 3.87
LSM4-202ENST00000593564 LRRIQ1Q96JM4 1722 aa39.19■■■■□ 3.86
LSM4-202ENST00000593564 RIMS1Q86UR5 1692 aaKnown RBP39.19■■■■□ 3.86
LSM4-202ENST00000593564 SIGLEC1Q9BZZ2 1709 aa39.17■■■■□ 3.86
LSM4-202ENST00000593564 CASKIN1Q8WXD9 1431 aa39.15■■■■□ 3.86
LSM4-202ENST00000593564 PCF11O94913 1555 aaKnown RBP39.14■■■■□ 3.86
LSM4-202ENST00000593564 ARHGAP5Q13017 1502 aa39.13■■■■□ 3.85
LSM4-202ENST00000593564 CCDC18Q5T9S5 1454 aa39.11■■■■□ 3.85
LSM4-202ENST00000593564 ATP10AO60312 1499 aa39.11■■■■□ 3.85
LSM4-202ENST00000593564 LMTK3Q96Q04 1460 aa39.11■■■■□ 3.85
LSM4-202ENST00000593564 ZNF518AQ6AHZ1 1483 aa39.09■■■■□ 3.85
LSM4-202ENST00000593564 C9orf84Q5VXU9 1444 aa39.07■■■■□ 3.85
LSM4-202ENST00000593564 MLECQ14165 292 aa39.04■■■■□ 3.84
LSM4-202ENST00000593564 KDM5CP41229 1560 aa39.04■■■■□ 3.84
LSM4-202ENST00000593564 AFAP1Q8N556 730 aa39.01■■■■□ 3.84
LSM4-202ENST00000593564 FYCO1Q9BQS8 1478 aa38.99■■■■□ 3.83
LSM4-202ENST00000593564 CDC42BPBQ9Y5S2 1711 aa38.98■■■■□ 3.83
LSM4-202ENST00000593564 ARHGEF12Q9NZN5 1544 aa38.98■■■■□ 3.83
LSM4-202ENST00000593564 FER1L4A9Z1Z3 1794 aa38.98■■■■□ 3.83
LSM4-202ENST00000593564 PREX2Q70Z35 1606 aa38.96■■■■□ 3.83
LSM4-202ENST00000593564 PLPPR3Q6T4P5 718 aa38.95■■■■□ 3.83
LSM4-202ENST00000593564 ABCC1P33527 1531 aa38.9■■■■□ 3.82
LSM4-202ENST00000593564 MLH3Q9UHC1 1453 aa38.89■■■■□ 3.82
LSM4-202ENST00000593564 DIP2CQ9Y2E4 1556 aa38.87■■■■□ 3.81
LSM4-202ENST00000593564 MYT1LQ9UL68 1186 aa38.87■■■■□ 3.81
LSM4-202ENST00000593564 TRAPPC8Q9Y2L5 1435 aa38.86■■■■□ 3.81
LSM4-202ENST00000593564 REREQ9P2R6 1566 aa38.85■■■■□ 3.81
LSM4-202ENST00000593564 HSPA2P54652 639 aa38.84■■■■□ 3.81
LSM4-202ENST00000593564 CDC42BPAQ5VT25 1732 aa38.81■■■■□ 3.8
LSM4-202ENST00000593564 ITSN2Q9NZM3 1697 aa38.81■■■■□ 3.8
LSM4-202ENST00000593564 ABCA6Q8N139 1617 aa38.8■■■■□ 3.8
LSM4-202ENST00000593564 FBXO41Q8TF61 875 aa38.78■■■■□ 3.8
LSM4-202ENST00000593564 AGLP35573 1532 aa38.73■■■■□ 3.79
LSM4-202ENST00000593564 GPATCH8Q9UKJ3 1502 aaKnown RBP38.73■■■■□ 3.79
LSM4-202ENST00000593564 CEBPAP49715 358 aaPredicted RBP38.72■■■■□ 3.79
LSM4-202ENST00000593564 KIDINS220Q9ULH0 1771 aa38.68■■■■□ 3.78
LSM4-202ENST00000593564 SAMD9LQ8IVG5 1584 aa38.68■■■■□ 3.78
LSM4-202ENST00000593564 ZNF777Q9ULD5 760 aaPredicted RBP38.67■■■■□ 3.78
LSM4-202ENST00000593564 PREX1Q8TCU6 1659 aa38.67■■■■□ 3.78
LSM4-202ENST00000593564 SYCP2Q9BX26 1530 aa38.63■■■■□ 3.78
LSM4-202ENST00000593564 MTUS2Q5JR59 1369 aa38.6■■■■□ 3.77
LSM4-202ENST00000593564 KIAA1107Q9UPP5 1409 aa38.6■■■■□ 3.77
LSM4-202ENST00000593564 CCNB3Q8WWL7 1395 aa38.59■■■■□ 3.77
LSM4-202ENST00000593564 CFDP1Q9UEE9 299 aaPredicted RBP38.59■■■■□ 3.77
LSM4-202ENST00000593564 PLEKHH2Q8IVE3 1493 aa38.58■■■■□ 3.77
LSM4-202ENST00000593564 HNRNPMP52272 730 aaKnown RBP eCLIP38.57■■■■□ 3.76
LSM4-202ENST00000593564 UHRF1BP1Q6BDS2 1440 aa38.56■■■■□ 3.76
LSM4-202ENST00000593564 ESF1Q9H501 851 aaKnown RBP38.56■■■■□ 3.76
LSM4-202ENST00000593564 SPAG9O60271 1321 aaKnown RBP38.56■■■■□ 3.76
LSM4-202ENST00000593564 SETD1BQ9UPS6 1966 aaKnown RBP38.55■■■■□ 3.76
LSM4-202ENST00000593564 C3P01024 1663 aa38.52■■■■□ 3.76
LSM4-202ENST00000593564 CNTLNQ9NXG0 1405 aa38.52■■■■□ 3.76
LSM4-202ENST00000593564 CEP162Q5TB80 1403 aa38.5■■■■□ 3.75
LSM4-202ENST00000593564 ATP7AQ04656 1500 aa38.48■■■■□ 3.75
LSM4-202ENST00000593564 EHBP1L1Q8N3D4 1523 aa38.47■■■■□ 3.75
LSM4-202ENST00000593564 INO80Q9ULG1 1556 aaPredicted RBP38.45■■■■□ 3.75
LSM4-202ENST00000593564 TIAM1Q13009 1591 aa38.43■■■■□ 3.74
LSM4-202ENST00000593564 CERKQ8TCT0 537 aa38.41■■■■□ 3.74
LSM4-202ENST00000593564 DMRT2Q9Y5R5 561 aa38.4■■■■□ 3.74
LSM4-202ENST00000593564 PLXNC1O60486 1568 aa38.4■■■■□ 3.74
LSM4-202ENST00000593564 STRCQ7RTU9 1775 aa38.39■■■■□ 3.74
LSM4-202ENST00000593564 A2MP01023 1474 aa38.38■■■■□ 3.73
LSM4-202ENST00000593564 SUPT6HQ7KZ85 1726 aaKnown RBP38.36■■■■□ 3.73
LSM4-202ENST00000593564 ZNF644Q9H582 1327 aaPredicted RBP38.36■■■■□ 3.73
LSM4-202ENST00000593564 MROH2AA6NES4 1674 aa38.35■■■■□ 3.73
LSM4-202ENST00000593564 NPATQ14207 1427 aa38.33■■■■□ 3.73
LSM4-202ENST00000593564 MBD5Q9P267 1494 aa38.33■■■■□ 3.73
LSM4-202ENST00000593564 ZMYM3Q14202 1370 aa38.31■■■■□ 3.72
LSM4-202ENST00000593564 PTPRTO14522 1441 aa38.26■■■■□ 3.72
LSM4-202ENST00000593564 RTEL1-TNFRSF6BF6WH68 1400 aa38.25■■■■□ 3.71
LSM4-202ENST00000593564 ADGBQ8N7X0 1667 aa38.25■■■■□ 3.71
LSM4-202ENST00000593564 NCOA2Q15596 1464 aa38.23■■■■□ 3.71
LSM4-202ENST00000593564 GGT6Q6P531 493 aa38.21■■■■□ 3.71
LSM4-202ENST00000593564 NCOA1Q15788 1441 aa38.21■■■■□ 3.71
LSM4-202ENST00000593564 CLTCQ00610 1675 aaKnown RBP38.2■■■■□ 3.71
LSM4-202ENST00000593564 PPP6R1Q9UPN7 881 aa38.2■■■■□ 3.71
LSM4-202ENST00000593564 CCDC141Q6ZP82 1450 aa38.15■■■■□ 3.7
LSM4-202ENST00000593564 DHX29Q7Z478 1369 aaKnown RBP38.15■■■■□ 3.7
LSM4-202ENST00000593564 PTPRKQ15262 1439 aa38.14■■■■□ 3.7
LSM4-202ENST00000593564 CAMSAP2Q08AD1 1489 aa38.14■■■■□ 3.7
LSM4-202ENST00000593564 RSPH4AQ5TD94 716 aa38.12■■■■□ 3.69
LSM4-202ENST00000593564 VPS8Q8N3P4 1428 aa38.12■■■■□ 3.69
LSM4-202ENST00000593564 CAMSAP1Q5T5Y3 1602 aa38.11■■■■□ 3.69
LSM4-202ENST00000593564 LOC105371045A0A1W2PR82 267 aa38.07■■■■□ 3.68
LSM4-202ENST00000593564 MYO3AQ8NEV4 1616 aa38.06■■■■□ 3.68
LSM4-202ENST00000593564 ZNF142P52746 1687 aaPredicted RBP38.05■■■■□ 3.68
LSM4-202ENST00000593564 LRRC9Q6ZRR7 1453 aa38.04■■■■□ 3.68
LSM4-202ENST00000593564 CEP170BQ9Y4F5 1589 aaPredicted RBP38.02■■■■□ 3.68
LSM4-202ENST00000593564 ARHGEF5Q12774 1597 aa38.01■■■■□ 3.67
LSM4-202ENST00000593564 LTBP4Q8N2S1 1624 aa38.01■■■■□ 3.67
LSM4-202ENST00000593564 PLA2R1Q13018 1463 aa38■■■■□ 3.67
LSM4-202ENST00000593564 KIF3BO15066 747 aa37.99■■■■□ 3.67
LSM4-202ENST00000593564 FAM135AQ9P2D6 1515 aa37.97■■■■□ 3.67
LSM4-202ENST00000593564 NCKAP5LQ9HCH0 1330 aa37.96■■■■□ 3.67
LSM4-202ENST00000593564 PKD2Q13563 968 aa37.95■■■■□ 3.67
LSM4-202ENST00000593564 MAP3K1Q13233 1512 aa37.95■■■■□ 3.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms