RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 CCDC18Q5T9S5 1454 aa20.75■□□□□ 0.91
VMP1-217ENST00000593168 DENND4BO75064 1496 aaPredicted RBP20.75■□□□□ 0.91
VMP1-217ENST00000593168 SIGLEC1Q9BZZ2 1709 aa20.74■□□□□ 0.91
VMP1-217ENST00000593168 AKNAQ7Z591 1439 aa20.73■□□□□ 0.91
VMP1-217ENST00000593168 LRRC9Q6ZRR7 1453 aa20.73■□□□□ 0.91
VMP1-217ENST00000593168 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.73■□□□□ 0.91
VMP1-217ENST00000593168 CFAP74Q9C0B2 1584 aa20.72■□□□□ 0.91
VMP1-217ENST00000593168 TTC37Q6PGP7 1564 aa20.72■□□□□ 0.91
VMP1-217ENST00000593168 FANCAO15360 1455 aa20.71■□□□□ 0.91
VMP1-217ENST00000593168 LRRIQ1Q96JM4 1722 aa20.71■□□□□ 0.91
VMP1-217ENST00000593168 PLEKHD1A6NEE1 506 aa20.7■□□□□ 0.9
VMP1-217ENST00000593168 ZMYM4Q5VZL5 1548 aa20.68■□□□□ 0.9
VMP1-217ENST00000593168 PCGF6Q9BYE7 350 aa20.67■□□□□ 0.9
VMP1-217ENST00000593168 YEATS2Q9ULM3 1422 aa20.66■□□□□ 0.9
VMP1-217ENST00000593168 ZFYVE16Q7Z3T8 1539 aa20.66■□□□□ 0.9
VMP1-217ENST00000593168 HSPA2P54652 639 aa20.64■□□□□ 0.89
VMP1-217ENST00000593168 MTUS2Q5JR59 1369 aa20.63■□□□□ 0.89
VMP1-217ENST00000593168 PLPPR3Q6T4P5 718 aa20.63■□□□□ 0.89
VMP1-217ENST00000593168 CDK13Q14004 1512 aaKnown RBP20.63■□□□□ 0.89
VMP1-217ENST00000593168 FER1L4A9Z1Z3 1794 aa20.62■□□□□ 0.89
VMP1-217ENST00000593168 CDK11AQ9UQ88 783 aaPredicted RBP20.62■□□□□ 0.89
VMP1-217ENST00000593168 POGZQ7Z3K3 1410 aa20.61■□□□□ 0.89
VMP1-217ENST00000593168 EHBP1L1Q8N3D4 1523 aa20.6■□□□□ 0.89
VMP1-217ENST00000593168 MAGI2Q86UL8 1455 aa20.59■□□□□ 0.89
VMP1-217ENST00000593168 MLECQ14165 292 aa20.57■□□□□ 0.88
VMP1-217ENST00000593168 SCAPERQ9BY12 1400 aa20.56■□□□□ 0.88
VMP1-217ENST00000593168 PLCH2O75038 1416 aa20.55■□□□□ 0.88
VMP1-217ENST00000593168 MYO5CQ9NQX4 1742 aa20.53■□□□□ 0.88
VMP1-217ENST00000593168 SUPT6HQ7KZ85 1726 aaKnown RBP20.52■□□□□ 0.88
VMP1-217ENST00000593168 ARHGEF12Q9NZN5 1544 aa20.52■□□□□ 0.87
VMP1-217ENST00000593168 TROQ12816 1431 aaPredicted RBP20.52■□□□□ 0.87
VMP1-217ENST00000593168 RRBP1Q9P2E9 1410 aaKnown RBP20.52■□□□□ 0.87
VMP1-217ENST00000593168 NCOA2Q15596 1464 aa20.51■□□□□ 0.87
VMP1-217ENST00000593168 PREX1Q8TCU6 1659 aa20.51■□□□□ 0.87
VMP1-217ENST00000593168 ATP10AO60312 1499 aa20.5■□□□□ 0.87
VMP1-217ENST00000593168 CERKQ8TCT0 537 aa20.49■□□□□ 0.87
VMP1-217ENST00000593168 KIF14Q15058 1648 aa20.49■□□□□ 0.87
VMP1-217ENST00000593168 C9orf84Q5VXU9 1444 aa20.48■□□□□ 0.87
VMP1-217ENST00000593168 CCNB3Q8WWL7 1395 aa20.46■□□□□ 0.87
VMP1-217ENST00000593168 CEBPAP49715 358 aaPredicted RBP20.44■□□□□ 0.86
VMP1-217ENST00000593168 EFCAB2Q5VUJ9 269 aa20.44■□□□□ 0.86
VMP1-217ENST00000593168 STRCQ7RTU9 1775 aa20.44■□□□□ 0.86
VMP1-217ENST00000593168 MYOM3Q5VTT5 1437 aa20.43■□□□□ 0.86
VMP1-217ENST00000593168 KDM5CP41229 1560 aa20.42■□□□□ 0.86
VMP1-217ENST00000593168 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.41■□□□□ 0.86
VMP1-217ENST00000593168 ZNF518AQ6AHZ1 1483 aa20.41■□□□□ 0.86
VMP1-217ENST00000593168 ARHGAP5Q13017 1502 aa20.4■□□□□ 0.86
VMP1-217ENST00000593168 DIP2CQ9Y2E4 1556 aa20.39■□□□□ 0.85
VMP1-217ENST00000593168 FGD6Q6ZV73 1430 aa20.39■□□□□ 0.85
VMP1-217ENST00000593168 CDC42BPBQ9Y5S2 1711 aa20.39■□□□□ 0.85
VMP1-217ENST00000593168 AFAP1Q8N556 730 aa20.38■□□□□ 0.85
VMP1-217ENST00000593168 MIA2Q96PC5 1412 aa20.37■□□□□ 0.85
VMP1-217ENST00000593168 ABCA6Q8N139 1617 aa20.37■□□□□ 0.85
VMP1-217ENST00000593168 C3P01024 1663 aa20.35■□□□□ 0.85
VMP1-217ENST00000593168 REREQ9P2R6 1566 aa20.35■□□□□ 0.85
VMP1-217ENST00000593168 SETD1BQ9UPS6 1966 aaKnown RBP20.34■□□□□ 0.85
VMP1-217ENST00000593168 UHRF1BP1Q6BDS2 1440 aa20.34■□□□□ 0.85
VMP1-217ENST00000593168 FAM50AQ14320 339 aaKnown RBP20.32■□□□□ 0.84
VMP1-217ENST00000593168 GPATCH8Q9UKJ3 1502 aaKnown RBP20.32■□□□□ 0.84
VMP1-217ENST00000593168 PREX2Q70Z35 1606 aa20.31■□□□□ 0.84
VMP1-217ENST00000593168 MYT1LQ9UL68 1186 aa20.31■□□□□ 0.84
VMP1-217ENST00000593168 ITSN2Q9NZM3 1697 aa20.31■□□□□ 0.84
VMP1-217ENST00000593168 TCOF1Q13428 1488 aaKnown RBP20.3■□□□□ 0.84
VMP1-217ENST00000593168 MLH3Q9UHC1 1453 aa20.3■□□□□ 0.84
VMP1-217ENST00000593168 PTPN23Q9H3S7 1636 aa20.29■□□□□ 0.84
VMP1-217ENST00000593168 DMRT2Q9Y5R5 561 aa20.29■□□□□ 0.84
VMP1-217ENST00000593168 ABCC1P33527 1531 aa20.28■□□□□ 0.84
VMP1-217ENST00000593168 TRAPPC8Q9Y2L5 1435 aa20.27■□□□□ 0.84
VMP1-217ENST00000593168 AGLP35573 1532 aa20.27■□□□□ 0.83
VMP1-217ENST00000593168 KIDINS220Q9ULH0 1771 aa20.26■□□□□ 0.83
VMP1-217ENST00000593168 CFDP1Q9UEE9 299 aaPredicted RBP20.26■□□□□ 0.83
VMP1-217ENST00000593168 CDC42BPAQ5VT25 1732 aa20.25■□□□□ 0.83
VMP1-217ENST00000593168 PTPRTO14522 1441 aa20.25■□□□□ 0.83
VMP1-217ENST00000593168 DISP3Q9P2K9 1392 aa20.23■□□□□ 0.83
VMP1-217ENST00000593168 ILDR2Q71H61 639 aa20.23■□□□□ 0.83
VMP1-217ENST00000593168 LTBP4Q8N2S1 1624 aa20.21■□□□□ 0.83
VMP1-217ENST00000593168 ITGAEP38570 1179 aa20.21■□□□□ 0.83
VMP1-217ENST00000593168 ESF1Q9H501 851 aaKnown RBP20.19■□□□□ 0.82
VMP1-217ENST00000593168 SAMD9LQ8IVG5 1584 aa20.17■□□□□ 0.82
VMP1-217ENST00000593168 ZNF644Q9H582 1327 aaPredicted RBP20.17■□□□□ 0.82
VMP1-217ENST00000593168 NCOA1Q15788 1441 aa20.17■□□□□ 0.82
VMP1-217ENST00000593168 MROH2AA6NES4 1674 aa20.16■□□□□ 0.82
VMP1-217ENST00000593168 CNTLNQ9NXG0 1405 aa20.16■□□□□ 0.82
VMP1-217ENST00000593168 CAMSAP2Q08AD1 1489 aa20.16■□□□□ 0.82
VMP1-217ENST00000593168 SPATA31D1Q6ZQQ2 1576 aa20.14■□□□□ 0.81
VMP1-217ENST00000593168 ZNF777Q9ULD5 760 aaPredicted RBP20.14■□□□□ 0.81
VMP1-217ENST00000593168 CAMSAP1Q5T5Y3 1602 aa20.13■□□□□ 0.81
VMP1-217ENST00000593168 PTPRKQ15262 1439 aa20.13■□□□□ 0.81
VMP1-217ENST00000593168 SYCP2Q9BX26 1530 aa20.12■□□□□ 0.81
VMP1-217ENST00000593168 IQSEC2Q5JU85 1478 aa20.11■□□□□ 0.81
VMP1-217ENST00000593168 CLTCQ00610 1675 aaKnown RBP20.11■□□□□ 0.81
VMP1-217ENST00000593168 SOCS7O14512 581 aa20.11■□□□□ 0.81
VMP1-217ENST00000593168 DNMT1P26358 1616 aaKnown RBP20.11■□□□□ 0.81
VMP1-217ENST00000593168 ABCC5O15440 1437 aa20.1■□□□□ 0.81
VMP1-217ENST00000593168 DAPK1P53355 1430 aa20.1■□□□□ 0.81
VMP1-217ENST00000593168 RSPH4AQ5TD94 716 aa20.1■□□□□ 0.81
VMP1-217ENST00000593168 NPATQ14207 1427 aa20.1■□□□□ 0.81
VMP1-217ENST00000593168 PLEKHH2Q8IVE3 1493 aa20.08■□□□□ 0.81
VMP1-217ENST00000593168 SETD5Q9C0A6 1442 aa20.08■□□□□ 0.8
VMP1-217ENST00000593168 KIAA1107Q9UPP5 1409 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms