RNA–Protein interactions for RNA: ENST00000592657.1

LDLRAD4-216, Transcript of low density lipoprotein receptor class A domain containing 4, humanhuman

TSL 2

Gene LDLRAD4, Length 464 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD4-216ENST00000592657 KRTAP3-3Q9BYR6 98 aa11.76□□□□□ -0.53
LDLRAD4-216ENST00000592657 KRTAP3-2Q9BYR7 98 aa11.76□□□□□ -0.53
LDLRAD4-216ENST00000592657 SOX12O15370 315 aa11.75□□□□□ -0.53
LDLRAD4-216ENST00000592657 RIOK3O14730 519 aaKnown RBP11.74□□□□□ -0.53
LDLRAD4-216ENST00000592657 MICALL2Q8IY33 904 aa11.7□□□□□ -0.54
LDLRAD4-216ENST00000592657 VGFO15240 615 aaPredicted RBP11.69□□□□□ -0.54
LDLRAD4-216ENST00000592657 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.68□□□□□ -0.54
LDLRAD4-216ENST00000592657 VARS2Q5ST30 1063 aaKnown RBP11.68□□□□□ -0.54
LDLRAD4-216ENST00000592657 ZFP91Q96JP5 570 aaPredicted RBP11.68□□□□□ -0.54
LDLRAD4-216ENST00000592657 TAOK2Q9UL54 1235 aa11.67□□□□□ -0.54
LDLRAD4-216ENST00000592657 ZSWIM6Q9HCJ5 1215 aa11.65□□□□□ -0.54
LDLRAD4-216ENST00000592657 PHF8Q9UPP1 1060 aa11.65□□□□□ -0.54
LDLRAD4-216ENST00000592657 NLRP6P59044 892 aa11.61□□□□□ -0.55
LDLRAD4-216ENST00000592657 TMEM92Q6UXU6 159 aa11.6□□□□□ -0.55
LDLRAD4-216ENST00000592657 SMARCA4P51532 1647 aa11.6□□□□□ -0.55
LDLRAD4-216ENST00000592657 RNF25Q96BH1 459 aaPredicted RBP11.59□□□□□ -0.55
LDLRAD4-216ENST00000592657 AMER1Q5JTC6 1135 aaPredicted RBP11.58□□□□□ -0.56
LDLRAD4-216ENST00000592657 ZNF687Q8N1G0 1237 aa11.58□□□□□ -0.56
LDLRAD4-216ENST00000592657 RNF166Q96A37 237 aaPredicted RBP11.58□□□□□ -0.56
LDLRAD4-216ENST00000592657 MS4A4AQ96JQ5 239 aa11.58□□□□□ -0.56
LDLRAD4-216ENST00000592657 ARSIQ5FYB1 569 aa11.56□□□□□ -0.56
LDLRAD4-216ENST00000592657 BAZ1AQ9NRL2 1556 aaPredicted RBP11.56□□□□□ -0.56
LDLRAD4-216ENST00000592657 MYT1LQ9UL68 1186 aa11.56□□□□□ -0.56
LDLRAD4-216ENST00000592657 STK24Q9Y6E0 443 aa11.56□□□□□ -0.56
LDLRAD4-216ENST00000592657 GPR153Q6NV75 609 aa11.55□□□□□ -0.56
LDLRAD4-216ENST00000592657 BCL11BQ9C0K0 894 aaPredicted RBP11.55□□□□□ -0.56
LDLRAD4-216ENST00000592657 SLC24A1O60721 1099 aa11.54□□□□□ -0.56
LDLRAD4-216ENST00000592657 RTN4Q9NQC3 1192 aaKnown RBP11.54□□□□□ -0.56
LDLRAD4-216ENST00000592657 ANKRD13DQ6ZTN6 518 aa11.53□□□□□ -0.56
LDLRAD4-216ENST00000592657 CECR2Q9BXF3 1484 aa11.52□□□□□ -0.56
LDLRAD4-216ENST00000592657 EIF4G1Q04637 1599 aaKnown RBP11.51□□□□□ -0.57
LDLRAD4-216ENST00000592657 STK25O00506 426 aa11.5□□□□□ -0.57
LDLRAD4-216ENST00000592657 MROH2BQ7Z745 1585 aa11.5□□□□□ -0.57
LDLRAD4-216ENST00000592657 PEG3Q9GZU2 1588 aa11.48□□□□□ -0.57
LDLRAD4-216ENST00000592657 WIZO95785 1651 aa11.48□□□□□ -0.57
LDLRAD4-216ENST00000592657 PTGER2P43116 358 aa11.47□□□□□ -0.57
LDLRAD4-216ENST00000592657 ZNF316A6NFI3 1004 aaPredicted RBP11.46□□□□□ -0.57
LDLRAD4-216ENST00000592657 ECM2O94769 699 aaPredicted RBP11.46□□□□□ -0.57
LDLRAD4-216ENST00000592657 KHSRPQ92945 711 aaKnown RBP eCLIP11.46□□□□□ -0.57
LDLRAD4-216ENST00000592657 FBXO22Q8NEZ5 403 aa11.44□□□□□ -0.58
LDLRAD4-216ENST00000592657 TMC2Q8TDI7 906 aa11.41□□□□□ -0.58
LDLRAD4-216ENST00000592657 MFRPQ9BY79 579 aa11.41□□□□□ -0.58
LDLRAD4-216ENST00000592657 C2orf72A6NCS6 295 aa11.4□□□□□ -0.58
LDLRAD4-216ENST00000592657 RSF1Q96T23 1441 aaPredicted RBP11.4□□□□□ -0.58
LDLRAD4-216ENST00000592657 CC2D2AQ9P2K1 1620 aa11.39□□□□□ -0.59
LDLRAD4-216ENST00000592657 NUDT7P0C024 238 aa11.39□□□□□ -0.59
LDLRAD4-216ENST00000592657 SMARCA2P51531 1590 aa11.37□□□□□ -0.59
LDLRAD4-216ENST00000592657 LSM11P83369 360 aaKnown RBP eCLIP11.37□□□□□ -0.59
LDLRAD4-216ENST00000592657 TOP2AP11388 1531 aaKnown RBP11.35□□□□□ -0.59
LDLRAD4-216ENST00000592657 HMGXB3Q12766 1538 aa11.35□□□□□ -0.59
LDLRAD4-216ENST00000592657 PBX2P40425 430 aa11.33□□□□□ -0.6
LDLRAD4-216ENST00000592657 PCDHGA4Q9Y5G9 962 aa11.33□□□□□ -0.6
LDLRAD4-216ENST00000592657 KIF3CO14782 793 aa11.32□□□□□ -0.6
LDLRAD4-216ENST00000592657 LHX6Q9UPM6 363 aa11.32□□□□□ -0.6
LDLRAD4-216ENST00000592657 AXIN2Q9Y2T1 843 aa11.31□□□□□ -0.6
LDLRAD4-216ENST00000592657 ATAD2BQ9ULI0 1458 aa11.31□□□□□ -0.6
LDLRAD4-216ENST00000592657 SLC34A2O95436 690 aa11.29□□□□□ -0.6
LDLRAD4-216ENST00000592657 PRDM2Q13029 1718 aa11.29□□□□□ -0.6
LDLRAD4-216ENST00000592657 RGL2O15211 777 aa11.27□□□□□ -0.61
LDLRAD4-216ENST00000592657 PSDA5PKW4 1024 aaPredicted RBP11.25□□□□□ -0.61
LDLRAD4-216ENST00000592657 BAZ1BQ9UIG0 1483 aaKnown RBP11.25□□□□□ -0.61
LDLRAD4-216ENST00000592657 STAC3Q96MF2 364 aa11.24□□□□□ -0.61
LDLRAD4-216ENST00000592657 ARHGAP33O14559 1287 aa11.22□□□□□ -0.61
LDLRAD4-216ENST00000592657 NCAPD3P42695 1498 aa11.22□□□□□ -0.61
LDLRAD4-216ENST00000592657 PKD2Q13563 968 aa11.22□□□□□ -0.61
LDLRAD4-216ENST00000592657 HCSTQ9UBK5 93 aa11.22□□□□□ -0.61
LDLRAD4-216ENST00000592657 TBC1D12O60347 775 aa11.2□□□□□ -0.62
LDLRAD4-216ENST00000592657 PPP1R37O75864 691 aa11.2□□□□□ -0.62
LDLRAD4-216ENST00000592657 ADGRD1Q6QNK2 874 aa11.18□□□□□ -0.62
LDLRAD4-216ENST00000592657 PLA2G2EQ9NZK7 142 aa11.18□□□□□ -0.62
LDLRAD4-216ENST00000592657 SUPT5HO00267 1087 aaKnown RBP11.17□□□□□ -0.62
LDLRAD4-216ENST00000592657 POTEEQ6S8J3 1075 aa11.17□□□□□ -0.62
LDLRAD4-216ENST00000592657 KCNH8Q96L42 1107 aa11.16□□□□□ -0.62
LDLRAD4-216ENST00000592657 PLPP6Q8IY26 295 aa11.15□□□□□ -0.62
LDLRAD4-216ENST00000592657 PTCD2Q8WV60 388 aaKnown RBP11.15□□□□□ -0.62
LDLRAD4-216ENST00000592657 PPP4R3BQ5MIZ7 849 aa11.14□□□□□ -0.63
LDLRAD4-216ENST00000592657 FOXK1P85037 733 aa11.12□□□□□ -0.63
LDLRAD4-216ENST00000592657 PSEN2P49810 448 aa11.11□□□□□ -0.63
LDLRAD4-216ENST00000592657 GPHNQ9NQX3 736 aaPredicted RBP11.11□□□□□ -0.63
LDLRAD4-216ENST00000592657 TK2O00142 265 aa11.1□□□□□ -0.63
LDLRAD4-216ENST00000592657 CCDC88BA6NC98 1476 aa11.09□□□□□ -0.63
LDLRAD4-216ENST00000592657 DMRTA1Q5VZB9 504 aa11.07□□□□□ -0.64
LDLRAD4-216ENST00000592657 KCTD12Q96CX2 325 aaKnown RBP11.07□□□□□ -0.64
LDLRAD4-216ENST00000592657 CHGAP10645 457 aaKnown RBP11.06□□□□□ -0.64
LDLRAD4-216ENST00000592657 DSG2Q14126 1118 aa11.06□□□□□ -0.64
LDLRAD4-216ENST00000592657 HS6ST3Q8IZP7 471 aa11.04□□□□□ -0.64
LDLRAD4-216ENST00000592657 KCNK17Q96T54 332 aa11.04□□□□□ -0.64
LDLRAD4-216ENST00000592657 KDM4FA0A1W2PPD8 638 aa11.03□□□□□ -0.64
LDLRAD4-216ENST00000592657 HRO43593 1189 aa11.01□□□□□ -0.65
LDLRAD4-216ENST00000592657 UPF1Q92900 1129 aaKnown RBP eCLIP11.01□□□□□ -0.65
LDLRAD4-216ENST00000592657 RYDENQ9NUL5 291 aaKnown RBP11.01□□□□□ -0.65
LDLRAD4-216ENST00000592657 PTPN5P54829 565 aa11□□□□□ -0.65
LDLRAD4-216ENST00000592657 KIF21AQ7Z4S6 1674 aa11□□□□□ -0.65
LDLRAD4-216ENST00000592657 LAMC3Q9Y6N6 1575 aa10.99□□□□□ -0.65
LDLRAD4-216ENST00000592657 ZNF454Q8N9F8 522 aa10.99□□□□□ -0.65
LDLRAD4-216ENST00000592657 GOLGA8CPA6NN73 597 aa10.98□□□□□ -0.65
LDLRAD4-216ENST00000592657 VPS9D1Q9Y2B5 631 aa10.95□□□□□ -0.66
LDLRAD4-216ENST00000592657 CFTRP13569 1480 aa10.94□□□□□ -0.66
LDLRAD4-216ENST00000592657 OXER1Q8TDS5 423 aa10.93□□□□□ -0.66
LDLRAD4-216ENST00000592657 PTPREP23469 700 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms