RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 MAGI2Q86UL8 1455 aa17.12■□□□□ 0.33
LIG3-212ENST00000590181 PLEKHD1A6NEE1 506 aa17.11■□□□□ 0.33
LIG3-212ENST00000590181 PLPPR3Q6T4P5 718 aa17.09■□□□□ 0.33
LIG3-212ENST00000590181 ARHGEF12Q9NZN5 1544 aa17.09■□□□□ 0.33
LIG3-212ENST00000590181 HSPA2P54652 639 aa17.08■□□□□ 0.32
LIG3-212ENST00000590181 CDK11AQ9UQ88 783 aaPredicted RBP17.07■□□□□ 0.32
LIG3-212ENST00000590181 KIF14Q15058 1648 aa17.07■□□□□ 0.32
LIG3-212ENST00000590181 C9orf84Q5VXU9 1444 aa17.04■□□□□ 0.32
LIG3-212ENST00000590181 SCAPERQ9BY12 1400 aa17.04■□□□□ 0.32
LIG3-212ENST00000590181 ARHGAP35Q9NRY4 1499 aa17.03■□□□□ 0.32
LIG3-212ENST00000590181 LRRIQ1Q96JM4 1722 aa17.02■□□□□ 0.32
LIG3-212ENST00000590181 PLCH2O75038 1416 aa17.02■□□□□ 0.31
LIG3-212ENST00000590181 KDM5CP41229 1560 aa17.02■□□□□ 0.31
LIG3-212ENST00000590181 ATP10AO60312 1499 aa17.01■□□□□ 0.31
LIG3-212ENST00000590181 MLECQ14165 292 aa17.01■□□□□ 0.31
LIG3-212ENST00000590181 STRCQ7RTU9 1775 aa17.01■□□□□ 0.31
LIG3-212ENST00000590181 DIP2CQ9Y2E4 1556 aa17■□□□□ 0.31
LIG3-212ENST00000590181 ABCA6Q8N139 1617 aa16.99■□□□□ 0.31
LIG3-212ENST00000590181 ZNF518AQ6AHZ1 1483 aa16.99■□□□□ 0.31
LIG3-212ENST00000590181 ARHGAP5Q13017 1502 aa16.98■□□□□ 0.31
LIG3-212ENST00000590181 C3P01024 1663 aa16.97■□□□□ 0.31
LIG3-212ENST00000590181 CERKQ8TCT0 537 aa16.97■□□□□ 0.31
LIG3-212ENST00000590181 REREQ9P2R6 1566 aa16.97■□□□□ 0.31
LIG3-212ENST00000590181 PREX2Q70Z35 1606 aa16.96■□□□□ 0.31
LIG3-212ENST00000590181 ITSN2Q9NZM3 1697 aa16.96■□□□□ 0.31
LIG3-212ENST00000590181 CDC42BPBQ9Y5S2 1711 aa16.96■□□□□ 0.3
LIG3-212ENST00000590181 UHRF1BP1Q6BDS2 1440 aa16.94■□□□□ 0.3
LIG3-212ENST00000590181 EHMT2Q96KQ7 1210 aa16.93■□□□□ 0.3
LIG3-212ENST00000590181 CASKIN1Q8WXD9 1431 aa16.93■□□□□ 0.3
LIG3-212ENST00000590181 CCDC18Q5T9S5 1454 aa16.93■□□□□ 0.3
LIG3-212ENST00000590181 ABCC1P33527 1531 aa16.92■□□□□ 0.3
LIG3-212ENST00000590181 SPATA31D1Q6ZQQ2 1576 aa16.91■□□□□ 0.3
LIG3-212ENST00000590181 TROQ12816 1431 aaPredicted RBP16.91■□□□□ 0.3
LIG3-212ENST00000590181 ATP1B4Q9UN42 357 aaPredicted RBP16.91■□□□□ 0.3
LIG3-212ENST00000590181 CLIP1P30622 1438 aa16.9■□□□□ 0.3
LIG3-212ENST00000590181 SETD1BQ9UPS6 1966 aaKnown RBP16.89■□□□□ 0.3
LIG3-212ENST00000590181 EFCAB2Q5VUJ9 269 aa16.89■□□□□ 0.29
LIG3-212ENST00000590181 CDC42BPAQ5VT25 1732 aa16.88■□□□□ 0.29
LIG3-212ENST00000590181 FYCO1Q9BQS8 1478 aa16.87■□□□□ 0.29
LIG3-212ENST00000590181 KIDINS220Q9ULH0 1771 aa16.87■□□□□ 0.29
LIG3-212ENST00000590181 CEBPAP49715 358 aaPredicted RBP16.86■□□□□ 0.29
LIG3-212ENST00000590181 AGLP35573 1532 aa16.86■□□□□ 0.29
LIG3-212ENST00000590181 MROH2AA6NES4 1674 aa16.85■□□□□ 0.29
LIG3-212ENST00000590181 MLH3Q9UHC1 1453 aa16.85■□□□□ 0.29
LIG3-212ENST00000590181 DISP3Q9P2K9 1392 aa16.84■□□□□ 0.29
LIG3-212ENST00000590181 SUPT6HQ7KZ85 1726 aaKnown RBP16.82■□□□□ 0.28
LIG3-212ENST00000590181 PTPRTO14522 1441 aa16.81■□□□□ 0.28
LIG3-212ENST00000590181 MYT1LQ9UL68 1186 aa16.81■□□□□ 0.28
LIG3-212ENST00000590181 DMRT2Q9Y5R5 561 aa16.81■□□□□ 0.28
LIG3-212ENST00000590181 LTBP4Q8N2S1 1624 aa16.81■□□□□ 0.28
LIG3-212ENST00000590181 AFAP1Q8N556 730 aa16.8■□□□□ 0.28
LIG3-212ENST00000590181 ZNF142P52746 1687 aaPredicted RBP16.8■□□□□ 0.28
LIG3-212ENST00000590181 TRAPPC8Q9Y2L5 1435 aa16.79■□□□□ 0.28
LIG3-212ENST00000590181 MYO3AQ8NEV4 1616 aa16.79■□□□□ 0.28
LIG3-212ENST00000590181 SAMD9LQ8IVG5 1584 aa16.78■□□□□ 0.28
LIG3-212ENST00000590181 CLTCQ00610 1675 aaKnown RBP16.78■□□□□ 0.28
LIG3-212ENST00000590181 NCOA1Q15788 1441 aa16.78■□□□□ 0.28
LIG3-212ENST00000590181 CNTLNQ9NXG0 1405 aa16.78■□□□□ 0.28
LIG3-212ENST00000590181 SYCP2Q9BX26 1530 aa16.77■□□□□ 0.28
LIG3-212ENST00000590181 IQSEC2Q5JU85 1478 aa16.77■□□□□ 0.28
LIG3-212ENST00000590181 CAMSAP1Q5T5Y3 1602 aa16.77■□□□□ 0.27
LIG3-212ENST00000590181 INO80Q9ULG1 1556 aaPredicted RBP16.76■□□□□ 0.27
LIG3-212ENST00000590181 CEP162Q5TB80 1403 aa16.75■□□□□ 0.27
LIG3-212ENST00000590181 ILDR2Q71H61 639 aa16.74■□□□□ 0.27
LIG3-212ENST00000590181 ESF1Q9H501 851 aaKnown RBP16.74■□□□□ 0.27
LIG3-212ENST00000590181 PLXNC1O60486 1568 aa16.73■□□□□ 0.27
LIG3-212ENST00000590181 ATP7AQ04656 1500 aa16.72■□□□□ 0.27
LIG3-212ENST00000590181 NPATQ14207 1427 aa16.71■□□□□ 0.27
LIG3-212ENST00000590181 CEP170BQ9Y4F5 1589 aaPredicted RBP16.7■□□□□ 0.26
LIG3-212ENST00000590181 ADGBQ8N7X0 1667 aa16.69■□□□□ 0.26
LIG3-212ENST00000590181 SOCS7O14512 581 aa16.69■□□□□ 0.26
LIG3-212ENST00000590181 MTUS2Q5JR59 1369 aa16.68■□□□□ 0.26
LIG3-212ENST00000590181 POLR1AO95602 1720 aaPredicted RBP16.66■□□□□ 0.26
LIG3-212ENST00000590181 PLA2R1Q13018 1463 aa16.65■□□□□ 0.26
LIG3-212ENST00000590181 PLEKHH2Q8IVE3 1493 aa16.65■□□□□ 0.26
LIG3-212ENST00000590181 GPATCH8Q9UKJ3 1502 aaKnown RBP16.63■□□□□ 0.25
LIG3-212ENST00000590181 CCNB3Q8WWL7 1395 aa16.63■□□□□ 0.25
LIG3-212ENST00000590181 KIAA1107Q9UPP5 1409 aa16.62■□□□□ 0.25
LIG3-212ENST00000590181 A2MP01023 1474 aa16.62■□□□□ 0.25
LIG3-212ENST00000590181 TCOF1Q13428 1488 aaKnown RBP16.61■□□□□ 0.25
LIG3-212ENST00000590181 EHBP1L1Q8N3D4 1523 aa16.61■□□□□ 0.25
LIG3-212ENST00000590181 LOC105371045A0A1W2PR82 267 aa16.61■□□□□ 0.25
LIG3-212ENST00000590181 CFDP1Q9UEE9 299 aaPredicted RBP16.61■□□□□ 0.25
LIG3-212ENST00000590181 SPAG9O60271 1321 aaKnown RBP16.61■□□□□ 0.25
LIG3-212ENST00000590181 VPS8Q8N3P4 1428 aa16.61■□□□□ 0.25
LIG3-212ENST00000590181 MAP3K1Q13233 1512 aa16.6■□□□□ 0.25
LIG3-212ENST00000590181 ZNF777Q9ULD5 760 aaPredicted RBP16.6■□□□□ 0.25
LIG3-212ENST00000590181 ZMYM3Q14202 1370 aa16.6■□□□□ 0.25
LIG3-212ENST00000590181 TIAM1Q13009 1591 aa16.6■□□□□ 0.25
LIG3-212ENST00000590181 RSPH4AQ5TD94 716 aa16.59■□□□□ 0.25
LIG3-212ENST00000590181 PTPRKQ15262 1439 aa16.59■□□□□ 0.25
LIG3-212ENST00000590181 ZNF335Q9H4Z2 1342 aaPredicted RBP16.58■□□□□ 0.24
LIG3-212ENST00000590181 DNMT1P26358 1616 aaKnown RBP16.58■□□□□ 0.24
LIG3-212ENST00000590181 NCKAP5LQ9HCH0 1330 aa16.57■□□□□ 0.24
LIG3-212ENST00000590181 NEURL4Q96JN8 1562 aa16.55■□□□□ 0.24
LIG3-212ENST00000590181 A2ML1A8K2U0 1454 aa16.54■□□□□ 0.24
LIG3-212ENST00000590181 HNRNPMP52272 730 aaKnown RBP eCLIP16.54■□□□□ 0.24
LIG3-212ENST00000590181 MED1Q15648 1581 aaPredicted RBP16.53■□□□□ 0.24
LIG3-212ENST00000590181 UBAP1LF5GYI3 381 aa16.53■□□□□ 0.24
LIG3-212ENST00000590181 APLP2Q06481 763 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms