RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 P3H3Q8IVL6 736 aa15.54■□□□□ 0.08
ZNF540-208ENST00000589857 PLEKHD1A6NEE1 506 aa15.53■□□□□ 0.08
ZNF540-208ENST00000589857 CCDC18Q5T9S5 1454 aa15.52■□□□□ 0.07
ZNF540-208ENST00000589857 POGZQ7Z3K3 1410 aa15.51■□□□□ 0.07
ZNF540-208ENST00000589857 ATP1B4Q9UN42 357 aaPredicted RBP15.51■□□□□ 0.07
ZNF540-208ENST00000589857 SETD5Q9C0A6 1442 aa15.51■□□□□ 0.07
ZNF540-208ENST00000589857 ABCA9Q8IUA7 1624 aa15.5■□□□□ 0.07
ZNF540-208ENST00000589857 MTUS2Q5JR59 1369 aa15.49■□□□□ 0.07
ZNF540-208ENST00000589857 EHBP1L1Q8N3D4 1523 aa15.48■□□□□ 0.07
ZNF540-208ENST00000589857 ADAMTSL3P82987 1691 aa15.47■□□□□ 0.07
ZNF540-208ENST00000589857 DENND4BO75064 1496 aaPredicted RBP15.46■□□□□ 0.06
ZNF540-208ENST00000589857 FAM50AQ14320 339 aaKnown RBP15.45■□□□□ 0.06
ZNF540-208ENST00000589857 AKNAQ7Z591 1439 aa15.44■□□□□ 0.06
ZNF540-208ENST00000589857 HECW1Q76N89 1606 aa15.44■□□□□ 0.06
ZNF540-208ENST00000589857 RAB3GAP2Q9H2M9 1393 aa15.44■□□□□ 0.06
ZNF540-208ENST00000589857 FGD6Q6ZV73 1430 aa15.43■□□□□ 0.06
ZNF540-208ENST00000589857 CENPBP07199 599 aaPredicted RBP15.43■□□□□ 0.06
ZNF540-208ENST00000589857 FANCAO15360 1455 aa15.42■□□□□ 0.06
ZNF540-208ENST00000589857 BCORL1Q5H9F3 1711 aa15.42■□□□□ 0.06
ZNF540-208ENST00000589857 RAPGEF6Q8TEU7 1601 aa15.42■□□□□ 0.06
ZNF540-208ENST00000589857 ITGAEP38570 1179 aa15.41■□□□□ 0.06
ZNF540-208ENST00000589857 TIMELESSQ9UNS1 1208 aa15.41■□□□□ 0.06
ZNF540-208ENST00000589857 ACIN1Q9UKV3 1341 aaKnown RBP15.41■□□□□ 0.06
ZNF540-208ENST00000589857 LMTK3Q96Q04 1460 aa15.4■□□□□ 0.06
ZNF540-208ENST00000589857 DMRT2Q9Y5R5 561 aa15.4■□□□□ 0.06
ZNF540-208ENST00000589857 MAGI2Q86UL8 1455 aa15.4■□□□□ 0.06
ZNF540-208ENST00000589857 MYOM3Q5VTT5 1437 aa15.39■□□□□ 0.05
ZNF540-208ENST00000589857 CFAP74Q9C0B2 1584 aa15.39■□□□□ 0.05
ZNF540-208ENST00000589857 SUPT6HQ7KZ85 1726 aaKnown RBP15.38■□□□□ 0.05
ZNF540-208ENST00000589857 PLPPR3Q6T4P5 718 aa15.38■□□□□ 0.05
ZNF540-208ENST00000589857 CERKQ8TCT0 537 aa15.38■□□□□ 0.05
ZNF540-208ENST00000589857 MADDQ8WXG6 1647 aa15.38■□□□□ 0.05
ZNF540-208ENST00000589857 NCOA2Q15596 1464 aa15.37■□□□□ 0.05
ZNF540-208ENST00000589857 ARHGEF40Q8TER5 1519 aa15.37■□□□□ 0.05
ZNF540-208ENST00000589857 NUP153P49790 1475 aaKnown RBP15.36■□□□□ 0.05
ZNF540-208ENST00000589857 CDK11AQ9UQ88 783 aaPredicted RBP15.36■□□□□ 0.05
ZNF540-208ENST00000589857 HSPA2P54652 639 aa15.35■□□□□ 0.05
ZNF540-208ENST00000589857 FRMPD1Q5SYB0 1578 aa15.33■□□□□ 0.05
ZNF540-208ENST00000589857 MLECQ14165 292 aa15.33■□□□□ 0.04
ZNF540-208ENST00000589857 ZFYVE16Q7Z3T8 1539 aa15.33■□□□□ 0.04
ZNF540-208ENST00000589857 EFCAB2Q5VUJ9 269 aa15.32■□□□□ 0.04
ZNF540-208ENST00000589857 HFM1A2PYH4 1435 aa15.32■□□□□ 0.04
ZNF540-208ENST00000589857 MIA2Q96PC5 1412 aa15.32■□□□□ 0.04
ZNF540-208ENST00000589857 RIMS1Q86UR5 1692 aaKnown RBP15.32■□□□□ 0.04
ZNF540-208ENST00000589857 FOXD1Q16676 465 aa15.31■□□□□ 0.04
ZNF540-208ENST00000589857 TCOF1Q13428 1488 aaKnown RBP15.3■□□□□ 0.04
ZNF540-208ENST00000589857 ZMYM4Q5VZL5 1548 aa15.3■□□□□ 0.04
ZNF540-208ENST00000589857 SCAPERQ9BY12 1400 aa15.29■□□□□ 0.04
ZNF540-208ENST00000589857 ESF1Q9H501 851 aaKnown RBP15.29■□□□□ 0.04
ZNF540-208ENST00000589857 MYT1LQ9UL68 1186 aa15.29■□□□□ 0.04
ZNF540-208ENST00000589857 PLCH2O75038 1416 aa15.28■□□□□ 0.04
ZNF540-208ENST00000589857 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.27■□□□□ 0.04
ZNF540-208ENST00000589857 RICTORQ6R327 1708 aa15.27■□□□□ 0.04
ZNF540-208ENST00000589857 ATP10AO60312 1499 aa15.27■□□□□ 0.03
ZNF540-208ENST00000589857 C9orf84Q5VXU9 1444 aa15.26■□□□□ 0.03
ZNF540-208ENST00000589857 YEATS2Q9ULM3 1422 aa15.26■□□□□ 0.03
ZNF540-208ENST00000589857 PTPN23Q9H3S7 1636 aa15.25■□□□□ 0.03
ZNF540-208ENST00000589857 DISP3Q9P2K9 1392 aa15.23■□□□□ 0.03
ZNF540-208ENST00000589857 UHRF1BP1Q6BDS2 1440 aa15.22■□□□□ 0.03
ZNF540-208ENST00000589857 TTC37Q6PGP7 1564 aa15.22■□□□□ 0.03
ZNF540-208ENST00000589857 ZNF518AQ6AHZ1 1483 aa15.2■□□□□ 0.02
ZNF540-208ENST00000589857 LRRIQ1Q96JM4 1722 aa15.2■□□□□ 0.02
ZNF540-208ENST00000589857 NAIPQ13075 1403 aa15.19■□□□□ 0.02
ZNF540-208ENST00000589857 FER1L4A9Z1Z3 1794 aa15.19■□□□□ 0.02
ZNF540-208ENST00000589857 ARHGEF12Q9NZN5 1544 aa15.18■□□□□ 0.02
ZNF540-208ENST00000589857 SOCS7O14512 581 aa15.18■□□□□ 0.02
ZNF540-208ENST00000589857 ROCK1Q13464 1354 aa15.17■□□□□ 0.02
ZNF540-208ENST00000589857 CEBPAP49715 358 aaPredicted RBP15.17■□□□□ 0.02
ZNF540-208ENST00000589857 CDK13Q14004 1512 aaKnown RBP15.17■□□□□ 0.02
ZNF540-208ENST00000589857 PREX1Q8TCU6 1659 aa15.16■□□□□ 0.02
ZNF540-208ENST00000589857 TONSLQ96HA7 1378 aa15.15■□□□□ 0.02
ZNF540-208ENST00000589857 AFAP1Q8N556 730 aa15.15■□□□□ 0.02
ZNF540-208ENST00000589857 TROQ12816 1431 aaPredicted RBP15.15■□□□□ 0.02
ZNF540-208ENST00000589857 PTPRKQ15262 1439 aa15.15■□□□□ 0.02
ZNF540-208ENST00000589857 MIER1Q8N108 512 aa15.14■□□□□ 0.01
ZNF540-208ENST00000589857 PTPRTO14522 1441 aa15.14■□□□□ 0.01
ZNF540-208ENST00000589857 GCC2Q8IWJ2 1684 aa15.12■□□□□ 0.01
ZNF540-208ENST00000589857 ARHGAP5Q13017 1502 aa15.12■□□□□ 0.01
ZNF540-208ENST00000589857 SETD1BQ9UPS6 1966 aaKnown RBP15.11■□□□□ 0.01
ZNF540-208ENST00000589857 CNTLNQ9NXG0 1405 aa15.11■□□□□ 0.01
ZNF540-208ENST00000589857 TRAPPC8Q9Y2L5 1435 aa15.11■□□□□ 0.01
ZNF540-208ENST00000589857 NEUROD1Q13562 356 aa15.11■□□□□ 0.01
ZNF540-208ENST00000589857 SCAF1Q9H7N4 1312 aaKnown RBP15.11■□□□□ 0.01
ZNF540-208ENST00000589857 KIF14Q15058 1648 aa15.1■□□□□ 0.01
ZNF540-208ENST00000589857 MYO5CQ9NQX4 1742 aa15.1■□□□□ 0.01
ZNF540-208ENST00000589857 MLH3Q9UHC1 1453 aa15.09■□□□□ 0.01
ZNF540-208ENST00000589857 PPP1R15AO75807 674 aaPredicted RBP15.09■□□□□ 0.01
ZNF540-208ENST00000589857 DAPK1P53355 1430 aa15.09■□□□□ 0.01
ZNF540-208ENST00000589857 IQSEC2Q5JU85 1478 aa15.08■□□□□ 0.01
ZNF540-208ENST00000589857 REREQ9P2R6 1566 aa15.07■□□□□ 0
ZNF540-208ENST00000589857 ITSN2Q9NZM3 1697 aa15.07■□□□□ 0
ZNF540-208ENST00000589857 SIN3AQ96ST3 1273 aa15.07■□□□□ 0
ZNF540-208ENST00000589857 KDM5CP41229 1560 aa15.07■□□□□ 0
ZNF540-208ENST00000589857 AGLP35573 1532 aa15.06■□□□□ 0
ZNF540-208ENST00000589857 DNMT1P26358 1616 aaKnown RBP15.06■□□□□ 0
ZNF540-208ENST00000589857 SIGLEC1Q9BZZ2 1709 aa15.06■□□□□ 0
ZNF540-208ENST00000589857 ILDR2Q71H61 639 aa15.05■□□□□ -0
ZNF540-208ENST00000589857 TRIM52Q96A61 297 aa15.03■□□□□ -0
ZNF540-208ENST00000589857 RRP7BPQ9NSQ0 103 aa15.03■□□□□ -0
ZNF540-208ENST00000589857 ABCC5O15440 1437 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms