RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 PCGF6Q9BYE7 350 aa16.15■□□□□ 0.18
VPS4B-204ENST00000589604 GPATCH8Q9UKJ3 1502 aaKnown RBP16.15■□□□□ 0.18
VPS4B-204ENST00000589604 PREX2Q70Z35 1606 aa16.14■□□□□ 0.17
VPS4B-204ENST00000589604 COL17A1Q9UMD9 1497 aaPredicted RBP16.13■□□□□ 0.17
VPS4B-204ENST00000589604 FANCAO15360 1455 aa16.11■□□□□ 0.17
VPS4B-204ENST00000589604 TEX14Q8IWB6 1497 aa16.11■□□□□ 0.17
VPS4B-204ENST00000589604 ARAP3Q8WWN8 1544 aa16.11■□□□□ 0.17
VPS4B-204ENST00000589604 ARHGAP5Q13017 1502 aa16.09■□□□□ 0.17
VPS4B-204ENST00000589604 CCNB3Q8WWL7 1395 aa16.09■□□□□ 0.17
VPS4B-204ENST00000589604 NEO1Q92859 1461 aa16.08■□□□□ 0.16
VPS4B-204ENST00000589604 PHLDB1Q86UU1 1377 aa16.08■□□□□ 0.16
VPS4B-204ENST00000589604 AKNAQ7Z591 1439 aa16.07■□□□□ 0.16
VPS4B-204ENST00000589604 SAMD9LQ8IVG5 1584 aa16.06■□□□□ 0.16
VPS4B-204ENST00000589604 ITSN2Q9NZM3 1697 aa16.06■□□□□ 0.16
VPS4B-204ENST00000589604 KDM6BO15054 1643 aa16.05■□□□□ 0.16
VPS4B-204ENST00000589604 EFCAB2Q5VUJ9 269 aa16.05■□□□□ 0.16
VPS4B-204ENST00000589604 CFAP74Q9C0B2 1584 aa16.05■□□□□ 0.16
VPS4B-204ENST00000589604 ARHGEF12Q9NZN5 1544 aa16.05■□□□□ 0.16
VPS4B-204ENST00000589604 ZNF644Q9H582 1327 aaPredicted RBP16.05■□□□□ 0.16
VPS4B-204ENST00000589604 FRMPD1Q5SYB0 1578 aa16.04■□□□□ 0.16
VPS4B-204ENST00000589604 CFDP1Q9UEE9 299 aaPredicted RBP16.03■□□□□ 0.16
VPS4B-204ENST00000589604 ADGRL1O94910 1474 aa16.03■□□□□ 0.16
VPS4B-204ENST00000589604 MYOM3Q5VTT5 1437 aa16.03■□□□□ 0.16
VPS4B-204ENST00000589604 ABCC1P33527 1531 aa16.02■□□□□ 0.16
VPS4B-204ENST00000589604 SENP3Q9H4L4 574 aaPredicted RBP16.02■□□□□ 0.16
VPS4B-204ENST00000589604 ZNF777Q9ULD5 760 aaPredicted RBP16.02■□□□□ 0.16
VPS4B-204ENST00000589604 RAPGEF3O95398 923 aa16.02■□□□□ 0.15
VPS4B-204ENST00000589604 SCAPERQ9BY12 1400 aa16.01■□□□□ 0.15
VPS4B-204ENST00000589604 RICTORQ6R327 1708 aa16.01■□□□□ 0.15
VPS4B-204ENST00000589604 RRBP1Q9P2E9 1410 aaKnown RBP16■□□□□ 0.15
VPS4B-204ENST00000589604 SYCP2Q9BX26 1530 aa15.99■□□□□ 0.15
VPS4B-204ENST00000589604 CAMSAP2Q08AD1 1489 aa15.99■□□□□ 0.15
VPS4B-204ENST00000589604 TRAPPC8Q9Y2L5 1435 aa15.98■□□□□ 0.15
VPS4B-204ENST00000589604 FGD6Q6ZV73 1430 aa15.98■□□□□ 0.15
VPS4B-204ENST00000589604 DENND4BO75064 1496 aaPredicted RBP15.98■□□□□ 0.15
VPS4B-204ENST00000589604 POGZQ7Z3K3 1410 aa15.97■□□□□ 0.15
VPS4B-204ENST00000589604 HNRNPMP52272 730 aaKnown RBP eCLIP15.97■□□□□ 0.15
VPS4B-204ENST00000589604 MIA2Q96PC5 1412 aa15.96■□□□□ 0.15
VPS4B-204ENST00000589604 MBD5Q9P267 1494 aa15.96■□□□□ 0.15
VPS4B-204ENST00000589604 AFAP1Q8N556 730 aa15.95■□□□□ 0.14
VPS4B-204ENST00000589604 PTPN23Q9H3S7 1636 aa15.95■□□□□ 0.14
VPS4B-204ENST00000589604 KIAA1107Q9UPP5 1409 aa15.94■□□□□ 0.14
VPS4B-204ENST00000589604 TCOF1Q13428 1488 aaKnown RBP15.93■□□□□ 0.14
VPS4B-204ENST00000589604 KDM5CP41229 1560 aa15.93■□□□□ 0.14
VPS4B-204ENST00000589604 PLEKHH2Q8IVE3 1493 aa15.92■□□□□ 0.14
VPS4B-204ENST00000589604 ZMYM4Q5VZL5 1548 aa15.92■□□□□ 0.14
VPS4B-204ENST00000589604 ZNF518AQ6AHZ1 1483 aa15.91■□□□□ 0.14
VPS4B-204ENST00000589604 YEATS2Q9ULM3 1422 aa15.9■□□□□ 0.14
VPS4B-204ENST00000589604 ARHGEF5Q12774 1597 aa15.89■□□□□ 0.13
VPS4B-204ENST00000589604 KIDINS220Q9ULH0 1771 aa15.88■□□□□ 0.13
VPS4B-204ENST00000589604 HECW2Q9P2P5 1572 aa15.87■□□□□ 0.13
VPS4B-204ENST00000589604 CCDC141Q6ZP82 1450 aa15.86■□□□□ 0.13
VPS4B-204ENST00000589604 INO80Q9ULG1 1556 aaPredicted RBP15.86■□□□□ 0.13
VPS4B-204ENST00000589604 MLH3Q9UHC1 1453 aa15.86■□□□□ 0.13
VPS4B-204ENST00000589604 ABCC5O15440 1437 aa15.86■□□□□ 0.13
VPS4B-204ENST00000589604 SIGLEC1Q9BZZ2 1709 aa15.85■□□□□ 0.13
VPS4B-204ENST00000589604 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.85■□□□□ 0.13
VPS4B-204ENST00000589604 DNMT1P26358 1616 aaKnown RBP15.85■□□□□ 0.13
VPS4B-204ENST00000589604 FAM50AQ14320 339 aaKnown RBP15.85■□□□□ 0.13
VPS4B-204ENST00000589604 ZFYVE16Q7Z3T8 1539 aa15.85■□□□□ 0.13
VPS4B-204ENST00000589604 ARHGEF40Q8TER5 1519 aa15.85■□□□□ 0.13
VPS4B-204ENST00000589604 ABCA6Q8N139 1617 aa15.84■□□□□ 0.13
VPS4B-204ENST00000589604 CROCC2H7BZ55 1655 aa15.84■□□□□ 0.13
VPS4B-204ENST00000589604 DIP2CQ9Y2E4 1556 aa15.84■□□□□ 0.13
VPS4B-204ENST00000589604 DAPK1P53355 1430 aa15.83■□□□□ 0.13
VPS4B-204ENST00000589604 MAGI2Q86UL8 1455 aa15.83■□□□□ 0.12
VPS4B-204ENST00000589604 SPAG9O60271 1321 aaKnown RBP15.83■□□□□ 0.12
VPS4B-204ENST00000589604 PTPRKQ15262 1439 aa15.83■□□□□ 0.12
VPS4B-204ENST00000589604 ATP7AQ04656 1500 aa15.83■□□□□ 0.12
VPS4B-204ENST00000589604 ADRA2BP18089 450 aa15.83■□□□□ 0.12
VPS4B-204ENST00000589604 MAST1Q9Y2H9 1570 aa15.81■□□□□ 0.12
VPS4B-204ENST00000589604 C9orf84Q5VXU9 1444 aa15.79■□□□□ 0.12
VPS4B-204ENST00000589604 RTEL1-TNFRSF6BF6WH68 1400 aa15.79■□□□□ 0.12
VPS4B-204ENST00000589604 RSPH4AQ5TD94 716 aa15.79■□□□□ 0.12
VPS4B-204ENST00000589604 ADGBQ8N7X0 1667 aa15.78■□□□□ 0.12
VPS4B-204ENST00000589604 ATP10AO60312 1499 aa15.78■□□□□ 0.12
VPS4B-204ENST00000589604 CHIC2Q9UKJ5 165 aa15.77■□□□□ 0.12
VPS4B-204ENST00000589604 MYT1LQ9UL68 1186 aa15.77■□□□□ 0.12
VPS4B-204ENST00000589604 SHANK2Q9UPX8 1470 aa15.77■□□□□ 0.12
VPS4B-204ENST00000589604 TSPY4P0CV99 314 aa15.76■□□□□ 0.11
VPS4B-204ENST00000589604 TSPY10P0CW01 314 aa15.76■□□□□ 0.11
VPS4B-204ENST00000589604 SLC4A1APQ9BWU0 796 aaKnown RBP15.76■□□□□ 0.11
VPS4B-204ENST00000589604 ITGAEP38570 1179 aa15.75■□□□□ 0.11
VPS4B-204ENST00000589604 PLXNC1O60486 1568 aa15.74■□□□□ 0.11
VPS4B-204ENST00000589604 REREQ9P2R6 1566 aa15.74■□□□□ 0.11
VPS4B-204ENST00000589604 ADGRL2O95490 1459 aa15.73■□□□□ 0.11
VPS4B-204ENST00000589604 A2MP01023 1474 aa15.72■□□□□ 0.11
VPS4B-204ENST00000589604 NCOA1Q15788 1441 aa15.71■□□□□ 0.11
VPS4B-204ENST00000589604 RRP7BPQ9NSQ0 103 aa15.7■□□□□ 0.1
VPS4B-204ENST00000589604 DHX29Q7Z478 1369 aaKnown RBP15.69■□□□□ 0.1
VPS4B-204ENST00000589604 KIF15Q9NS87 1388 aa15.69■□□□□ 0.1
VPS4B-204ENST00000589604 AGLP35573 1532 aa15.68■□□□□ 0.1
VPS4B-204ENST00000589604 BCORL1Q5H9F3 1711 aa15.67■□□□□ 0.1
VPS4B-204ENST00000589604 ANKRD30AQ9BXX3 1397 aa15.67■□□□□ 0.1
VPS4B-204ENST00000589604 ARID4BQ4LE39 1312 aaPredicted RBP15.67■□□□□ 0.1
VPS4B-204ENST00000589604 DUOX2Q9NRD8 1548 aa15.66■□□□□ 0.1
VPS4B-204ENST00000589604 KDM4FA0A1W2PPD8 638 aa15.66■□□□□ 0.1
VPS4B-204ENST00000589604 ROCK1Q13464 1354 aa15.66■□□□□ 0.1
VPS4B-204ENST00000589604 MLECQ14165 292 aa15.65■□□□□ 0.1
VPS4B-204ENST00000589604 ADAMTSL3P82987 1691 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms