RNA–Protein interactions for RNA: ENST00000588507.5

TPM4-210, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-210ENST00000588507 RICTORQ6R327 1708 aa12.85□□□□□ -0.35
TPM4-210ENST00000588507 SETD1AO15047 1707 aaKnown RBP12.85□□□□□ -0.35
TPM4-210ENST00000588507 MAGI2Q86UL8 1455 aa12.85□□□□□ -0.35
TPM4-210ENST00000588507 CAMSAP1Q5T5Y3 1602 aa12.84□□□□□ -0.35
TPM4-210ENST00000588507 TRAPPC8Q9Y2L5 1435 aa12.84□□□□□ -0.35
TPM4-210ENST00000588507 PTPRKQ15262 1439 aa12.83□□□□□ -0.36
TPM4-210ENST00000588507 PKD2Q13563 968 aa12.83□□□□□ -0.36
TPM4-210ENST00000588507 ZMYM4Q5VZL5 1548 aa12.83□□□□□ -0.36
TPM4-210ENST00000588507 UGGT2Q9NYU1 1516 aa12.83□□□□□ -0.36
TPM4-210ENST00000588507 SRCAPQ6ZRS2 3230 aa12.82□□□□□ -0.36
TPM4-210ENST00000588507 IFFO2Q5TF58 517 aa12.81□□□□□ -0.36
TPM4-210ENST00000588507 ABCA8O94911 1581 aa12.81□□□□□ -0.36
TPM4-210ENST00000588507 CARMIL1Q5VZK9 1371 aa12.81□□□□□ -0.36
TPM4-210ENST00000588507 PPP6R1Q9UPN7 881 aa12.8□□□□□ -0.36
TPM4-210ENST00000588507 ATP10AO60312 1499 aa12.78□□□□□ -0.36
TPM4-210ENST00000588507 CPS1P31327 1500 aa12.78□□□□□ -0.36
TPM4-210ENST00000588507 ARID3CA6NKF2 412 aa12.76□□□□□ -0.37
TPM4-210ENST00000588507 C9orf84Q5VXU9 1444 aa12.76□□□□□ -0.37
TPM4-210ENST00000588507 C3P01024 1663 aa12.75□□□□□ -0.37
TPM4-210ENST00000588507 KIF27Q86VH2 1401 aa12.75□□□□□ -0.37
TPM4-210ENST00000588507 ESF1Q9H501 851 aaKnown RBP12.75□□□□□ -0.37
TPM4-210ENST00000588507 ALKQ9UM73 1620 aa12.74□□□□□ -0.37
TPM4-210ENST00000588507 HECW1Q76N89 1606 aa12.73□□□□□ -0.37
TPM4-210ENST00000588507 ATP10BO94823 1461 aa12.72□□□□□ -0.37
TPM4-210ENST00000588507 PLA2R1Q13018 1463 aa12.72□□□□□ -0.37
TPM4-210ENST00000588507 TCOF1Q13428 1488 aaKnown RBP12.71□□□□□ -0.38
TPM4-210ENST00000588507 SHANK2Q9UPX8 1470 aa12.7□□□□□ -0.38
TPM4-210ENST00000588507 RAPGEF2Q9Y4G8 1499 aa12.69□□□□□ -0.38
TPM4-210ENST00000588507 CFAP74Q9C0B2 1584 aa12.69□□□□□ -0.38
TPM4-210ENST00000588507 FAM9AQ8IZU1 332 aaPredicted RBP12.68□□□□□ -0.38
TPM4-210ENST00000588507 NPATQ14207 1427 aa12.65□□□□□ -0.38
TPM4-210ENST00000588507 TRIM52Q96A61 297 aa12.65□□□□□ -0.38
TPM4-210ENST00000588507 GOLGA3Q08378 1498 aa12.65□□□□□ -0.38
TPM4-210ENST00000588507 FOXD1Q16676 465 aa12.64□□□□□ -0.39
TPM4-210ENST00000588507 RBM33Q96EV2 1170 aaKnown RBP12.64□□□□□ -0.39
TPM4-210ENST00000588507 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.63□□□□□ -0.39
TPM4-210ENST00000588507 HNRNPUL2Q1KMD3 747 aaKnown RBP12.63□□□□□ -0.39
TPM4-210ENST00000588507 ZRANB1Q9UGI0 708 aa12.63□□□□□ -0.39
TPM4-210ENST00000588507 SCAPERQ9BY12 1400 aa12.62□□□□□ -0.39
TPM4-210ENST00000588507 CNTLNQ9NXG0 1405 aa12.62□□□□□ -0.39
TPM4-210ENST00000588507 SUPT6HQ7KZ85 1726 aaKnown RBP12.59□□□□□ -0.39
TPM4-210ENST00000588507 AGLP35573 1532 aa12.57□□□□□ -0.4
TPM4-210ENST00000588507 ZNF142P52746 1687 aaPredicted RBP12.57□□□□□ -0.4
TPM4-210ENST00000588507 ZNF772Q68DY9 489 aaPredicted RBP12.56□□□□□ -0.4
TPM4-210ENST00000588507 MYT1LQ9UL68 1186 aa12.56□□□□□ -0.4
TPM4-210ENST00000588507 LRRC7Q96NW7 1537 aa12.56□□□□□ -0.4
TPM4-210ENST00000588507 CEP170BQ9Y4F5 1589 aaPredicted RBP12.56□□□□□ -0.4
TPM4-210ENST00000588507 ZMYM3Q14202 1370 aa12.55□□□□□ -0.4
TPM4-210ENST00000588507 RXRBP28702 533 aa12.54□□□□□ -0.4
TPM4-210ENST00000588507 VWDEQ8N2E2 1590 aa12.54□□□□□ -0.4
TPM4-210ENST00000588507 SETBP1Q9Y6X0 1596 aa12.54□□□□□ -0.4
TPM4-210ENST00000588507 RNF17Q9BXT8 1623 aaKnown RBP12.54□□□□□ -0.4
TPM4-210ENST00000588507 PLEKHD1A6NEE1 506 aa12.53□□□□□ -0.4
TPM4-210ENST00000588507 MYO3AQ8NEV4 1616 aa12.52□□□□□ -0.4
TPM4-210ENST00000588507 REREQ9P2R6 1566 aa12.52□□□□□ -0.41
TPM4-210ENST00000588507 FAM135BQ49AJ0 1406 aa12.51□□□□□ -0.41
TPM4-210ENST00000588507 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.5□□□□□ -0.411e-6■■□□□ 14.3
TPM4-210ENST00000588507 MROH2AA6NES4 1674 aa12.48□□□□□ -0.41
TPM4-210ENST00000588507 NEURL4Q96JN8 1562 aa12.48□□□□□ -0.41
TPM4-210ENST00000588507 CDK12Q9NYV4 1490 aaPredicted RBP12.48□□□□□ -0.41
TPM4-210ENST00000588507 DIP2CQ9Y2E4 1556 aa12.47□□□□□ -0.41
TPM4-210ENST00000588507 AFAP1Q8N556 730 aa12.47□□□□□ -0.41
TPM4-210ENST00000588507 ZNF518AQ6AHZ1 1483 aa12.46□□□□□ -0.41
TPM4-210ENST00000588507 POLR1AO95602 1720 aaPredicted RBP12.46□□□□□ -0.41
TPM4-210ENST00000588507 ANKLE2Q86XL3 938 aa12.46□□□□□ -0.41
TPM4-210ENST00000588507 PLCH2O75038 1416 aa12.45□□□□□ -0.42
TPM4-210ENST00000588507 MEX3CQ5U5Q3 659 aaKnown RBP12.45□□□□□ -0.42
TPM4-210ENST00000588507 EFCAB2Q5VUJ9 269 aa12.45□□□□□ -0.42
TPM4-210ENST00000588507 P3H3Q8IVL6 736 aa12.45□□□□□ -0.42
TPM4-210ENST00000588507 A2ML1A8K2U0 1454 aa12.45□□□□□ -0.42
TPM4-210ENST00000588507 DNMT1P26358 1616 aaKnown RBP12.44□□□□□ -0.42
TPM4-210ENST00000588507 SYNMO15061 1565 aa12.43□□□□□ -0.42
TPM4-210ENST00000588507 JCADQ9P266 1359 aa12.43□□□□□ -0.42
TPM4-210ENST00000588507 RAPGEF6Q8TEU7 1601 aa12.42□□□□□ -0.42
TPM4-210ENST00000588507 YY1P25490 414 aa12.42□□□□□ -0.42
TPM4-210ENST00000588507 NPHP4O75161 1426 aaPredicted RBP12.42□□□□□ -0.42
TPM4-210ENST00000588507 KDM5CP41229 1560 aa12.42□□□□□ -0.42
TPM4-210ENST00000588507 NUTM2BA6NNL0 878 aaPredicted RBP12.41□□□□□ -0.42
TPM4-210ENST00000588507 NUTM2EB1AL46 878 aaPredicted RBP12.41□□□□□ -0.42
TPM4-210ENST00000588507 NUTM2DQ5VT03 806 aaPredicted RBP12.41□□□□□ -0.42
TPM4-210ENST00000588507 NUTM2AQ8IVF1 878 aaPredicted RBP12.41□□□□□ -0.42
TPM4-210ENST00000588507 CTTNBP2Q8WZ74 1663 aa12.41□□□□□ -0.42
TPM4-210ENST00000588507 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.41□□□□□ -0.428e-48■■■■□ 23.3
TPM4-210ENST00000588507 STRCP1A6NGW2 1772 aa12.4□□□□□ -0.42
TPM4-210ENST00000588507 ABCA6Q8N139 1617 aa12.4□□□□□ -0.42
TPM4-210ENST00000588507 CDK13Q14004 1512 aaKnown RBP12.39□□□□□ -0.43
TPM4-210ENST00000588507 MED14O60244 1454 aa12.39□□□□□ -0.43
TPM4-210ENST00000588507 MLH3Q9UHC1 1453 aa12.39□□□□□ -0.43
TPM4-210ENST00000588507 NUP153P49790 1475 aaKnown RBP12.38□□□□□ -0.43
TPM4-210ENST00000588507 SPATA31A6Q5VVP1 1343 aa12.37□□□□□ -0.43
TPM4-210ENST00000588507 ATAD2Q6PL18 1390 aa12.35□□□□□ -0.43
TPM4-210ENST00000588507 THEMISQ8N1K5 641 aaPredicted RBP12.35□□□□□ -0.43
TPM4-210ENST00000588507 LRP5O75197 1615 aa12.35□□□□□ -0.43
TPM4-210ENST00000588507 LRP6O75581 1613 aa12.35□□□□□ -0.43
TPM4-210ENST00000588507 SENP3-EIF4A1A0A087X0R7 540 aa12.34□□□□□ -0.43
TPM4-210ENST00000588507 CLTCQ00610 1675 aaKnown RBP12.34□□□□□ -0.43
TPM4-210ENST00000588507 ROBO1Q9Y6N7 1651 aa12.34□□□□□ -0.43
TPM4-210ENST00000588507 RGS12O14924 1447 aa12.34□□□□□ -0.43
TPM4-210ENST00000588507 DEPDC5O75140 1603 aa12.32□□□□□ -0.44
TPM4-210ENST00000588507 RBM6P78332 1123 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms