RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 PCF11O94913 1555 aaKnown RBP23.3■■□□□ 1.32
VMP1-206ENST00000587945 ZFYVE16Q7Z3T8 1539 aa23.28■■□□□ 1.32
VMP1-206ENST00000587945 LRRIQ1Q96JM4 1722 aa23.28■■□□□ 1.32
VMP1-206ENST00000587945 MAGI2Q86UL8 1455 aa23.27■■□□□ 1.32
VMP1-206ENST00000587945 BCORL1Q5H9F3 1711 aa23.27■■□□□ 1.32
VMP1-206ENST00000587945 CCDC18Q5T9S5 1454 aa23.26■■□□□ 1.31
VMP1-206ENST00000587945 MLECQ14165 292 aa23.26■■□□□ 1.31
VMP1-206ENST00000587945 AFAP1Q8N556 730 aa23.26■■□□□ 1.31
VMP1-206ENST00000587945 ARHGAP5Q13017 1502 aa23.26■■□□□ 1.31
VMP1-206ENST00000587945 MADDQ8WXG6 1647 aa23.25■■□□□ 1.31
VMP1-206ENST00000587945 MYO5CQ9NQX4 1742 aa23.23■■□□□ 1.31
VMP1-206ENST00000587945 PLPPR3Q6T4P5 718 aa23.23■■□□□ 1.31
VMP1-206ENST00000587945 FYCO1Q9BQS8 1478 aa23.22■■□□□ 1.31
VMP1-206ENST00000587945 MYT1LQ9UL68 1186 aa23.19■■□□□ 1.3
VMP1-206ENST00000587945 SIGLEC1Q9BZZ2 1709 aa23.19■■□□□ 1.3
VMP1-206ENST00000587945 ATP10AO60312 1499 aa23.18■■□□□ 1.3
VMP1-206ENST00000587945 ZNF518AQ6AHZ1 1483 aa23.17■■□□□ 1.3
VMP1-206ENST00000587945 ILDR1Q86SU0 546 aaPredicted RBP23.16■■□□□ 1.3
VMP1-206ENST00000587945 C9orf84Q5VXU9 1444 aa23.16■■□□□ 1.3
VMP1-206ENST00000587945 RIMS1Q86UR5 1692 aaKnown RBP23.14■■□□□ 1.29
VMP1-206ENST00000587945 TRAPPC8Q9Y2L5 1435 aa23.14■■□□□ 1.29
VMP1-206ENST00000587945 ARHGEF12Q9NZN5 1544 aa23.13■■□□□ 1.29
VMP1-206ENST00000587945 ZNF777Q9ULD5 760 aaPredicted RBP23.12■■□□□ 1.29
VMP1-206ENST00000587945 KDM5CP41229 1560 aa23.11■■□□□ 1.29
VMP1-206ENST00000587945 CDC42BPBQ9Y5S2 1711 aa23.11■■□□□ 1.29
VMP1-206ENST00000587945 PREX2Q70Z35 1606 aa23.1■■□□□ 1.29
VMP1-206ENST00000587945 LMTK3Q96Q04 1460 aa23.09■■□□□ 1.29
VMP1-206ENST00000587945 ABCC1P33527 1531 aa23.08■■□□□ 1.28
VMP1-206ENST00000587945 GPATCH8Q9UKJ3 1502 aaKnown RBP23.07■■□□□ 1.28
VMP1-206ENST00000587945 CEP162Q5TB80 1403 aa23.07■■□□□ 1.28
VMP1-206ENST00000587945 MLH3Q9UHC1 1453 aa23.06■■□□□ 1.28
VMP1-206ENST00000587945 HSPA2P54652 639 aa23.06■■□□□ 1.28
VMP1-206ENST00000587945 MTUS2Q5JR59 1369 aa23.05■■□□□ 1.28
VMP1-206ENST00000587945 CEBPAP49715 358 aaPredicted RBP23.05■■□□□ 1.28
VMP1-206ENST00000587945 HNRNPMP52272 730 aaKnown RBP eCLIP23.04■■□□□ 1.282e-7■■■■□ 25.4
VMP1-206ENST00000587945 DIP2CQ9Y2E4 1556 aa23.04■■□□□ 1.28
VMP1-206ENST00000587945 CFDP1Q9UEE9 299 aaPredicted RBP23.03■■□□□ 1.28
VMP1-206ENST00000587945 LOC105371045A0A1W2PR82 267 aa23.02■■□□□ 1.28
VMP1-206ENST00000587945 CDC42BPAQ5VT25 1732 aa23.02■■□□□ 1.28
VMP1-206ENST00000587945 CCNB3Q8WWL7 1395 aa23.01■■□□□ 1.27
VMP1-206ENST00000587945 ABCA6Q8N139 1617 aa23■■□□□ 1.27
VMP1-206ENST00000587945 ITSN2Q9NZM3 1697 aa22.99■■□□□ 1.27
VMP1-206ENST00000587945 SAMD9LQ8IVG5 1584 aa22.98■■□□□ 1.27
VMP1-206ENST00000587945 FER1L4A9Z1Z3 1794 aa22.98■■□□□ 1.27
VMP1-206ENST00000587945 SPAG9O60271 1321 aaKnown RBP22.97■■□□□ 1.27
VMP1-206ENST00000587945 SYCP2Q9BX26 1530 aa22.97■■□□□ 1.27
VMP1-206ENST00000587945 ZNF644Q9H582 1327 aaPredicted RBP22.95■■□□□ 1.26
VMP1-206ENST00000587945 REREQ9P2R6 1566 aa22.95■■□□□ 1.26
VMP1-206ENST00000587945 KIAA1107Q9UPP5 1409 aa22.93■■□□□ 1.26
VMP1-206ENST00000587945 KIDINS220Q9ULH0 1771 aa22.92■■□□□ 1.26
VMP1-206ENST00000587945 AGLP35573 1532 aa22.92■■□□□ 1.26
VMP1-206ENST00000587945 ESF1Q9H501 851 aaKnown RBP22.91■■□□□ 1.26
VMP1-206ENST00000587945 PLEKHH2Q8IVE3 1493 aa22.91■■□□□ 1.26
VMP1-206ENST00000587945 EHBP1L1Q8N3D4 1523 aa22.9■■□□□ 1.26
VMP1-206ENST00000587945 TIAM1Q13009 1591 aa22.87■■□□□ 1.25
VMP1-206ENST00000587945 ATP7AQ04656 1500 aa22.84■■□□□ 1.25
VMP1-206ENST00000587945 NCOA2Q15596 1464 aa22.82■■□□□ 1.24
VMP1-206ENST00000587945 MBD5Q9P267 1494 aa22.82■■□□□ 1.24
VMP1-206ENST00000587945 FBXO41Q8TF61 875 aa22.82■■□□□ 1.24
VMP1-206ENST00000587945 UHRF1BP1Q6BDS2 1440 aa22.82■■□□□ 1.24
VMP1-206ENST00000587945 A2MP01023 1474 aa22.81■■□□□ 1.24
VMP1-206ENST00000587945 VPS8Q8N3P4 1428 aa22.81■■□□□ 1.24
VMP1-206ENST00000587945 CNTLNQ9NXG0 1405 aa22.8■■□□□ 1.24
VMP1-206ENST00000587945 GGT6Q6P531 493 aa22.79■■□□□ 1.24
VMP1-206ENST00000587945 INO80Q9ULG1 1556 aaPredicted RBP22.79■■□□□ 1.24
VMP1-206ENST00000587945 PREX1Q8TCU6 1659 aa22.77■■□□□ 1.24
VMP1-206ENST00000587945 ZMYM3Q14202 1370 aa22.76■■□□□ 1.23
VMP1-206ENST00000587945 C3P01024 1663 aa22.76■■□□□ 1.23
VMP1-206ENST00000587945 KANK4Q5T7N3 995 aaPredicted RBP22.75■■□□□ 1.23
VMP1-206ENST00000587945 PLXNC1O60486 1568 aa22.74■■□□□ 1.23
VMP1-206ENST00000587945 SUPT6HQ7KZ85 1726 aaKnown RBP22.74■■□□□ 1.23
VMP1-206ENST00000587945 CAMSAP2Q08AD1 1489 aa22.73■■□□□ 1.23
VMP1-206ENST00000587945 LRRC9Q6ZRR7 1453 aa22.73■■□□□ 1.23
VMP1-206ENST00000587945 RTEL1-TNFRSF6BF6WH68 1400 aa22.72■■□□□ 1.23
VMP1-206ENST00000587945 DHX29Q7Z478 1369 aaKnown RBP22.7■■□□□ 1.22
VMP1-206ENST00000587945 CCDC141Q6ZP82 1450 aa22.7■■□□□ 1.22
VMP1-206ENST00000587945 CERKQ8TCT0 537 aa22.69■■□□□ 1.22
VMP1-206ENST00000587945 RSPH4AQ5TD94 716 aa22.68■■□□□ 1.22
VMP1-206ENST00000587945 DMRT2Q9Y5R5 561 aa22.68■■□□□ 1.22
VMP1-206ENST00000587945 NPATQ14207 1427 aa22.67■■□□□ 1.22
VMP1-206ENST00000587945 SETD1BQ9UPS6 1966 aaKnown RBP22.67■■□□□ 1.22
VMP1-206ENST00000587945 KIF3BO15066 747 aa22.66■■□□□ 1.22
VMP1-206ENST00000587945 PPP6R1Q9UPN7 881 aa22.65■■□□□ 1.22
VMP1-206ENST00000587945 TSPY4P0CV99 314 aa22.64■■□□□ 1.21
VMP1-206ENST00000587945 TSPY10P0CW01 314 aa22.64■■□□□ 1.21
VMP1-206ENST00000587945 PTPRKQ15262 1439 aa22.63■■□□□ 1.21
VMP1-206ENST00000587945 STRCQ7RTU9 1775 aa22.63■■□□□ 1.21
VMP1-206ENST00000587945 MROH2AA6NES4 1674 aa22.62■■□□□ 1.21
VMP1-206ENST00000587945 CLTCQ00610 1675 aaKnown RBP22.62■■□□□ 1.21
VMP1-206ENST00000587945 ADGBQ8N7X0 1667 aa22.62■■□□□ 1.21
VMP1-206ENST00000587945 MAP3K1Q13233 1512 aa22.62■■□□□ 1.21
VMP1-206ENST00000587945 NCOA1Q15788 1441 aa22.6■■□□□ 1.21
VMP1-206ENST00000587945 PTPRTO14522 1441 aa22.59■■□□□ 1.21
VMP1-206ENST00000587945 ARHGEF5Q12774 1597 aa22.58■■□□□ 1.2
VMP1-206ENST00000587945 NCKAP5LQ9HCH0 1330 aa22.57■■□□□ 1.2
VMP1-206ENST00000587945 MYOM3Q5VTT5 1437 aa22.57■■□□□ 1.2
VMP1-206ENST00000587945 APLP2Q06481 763 aa22.56■■□□□ 1.2
VMP1-206ENST00000587945 FBXO31Q5XUX0 539 aaPredicted RBP22.56■■□□□ 1.2
VMP1-206ENST00000587945 CAMSAP1Q5T5Y3 1602 aa22.55■■□□□ 1.2
VMP1-206ENST00000587945 WASHC2CQ9Y4E1 1318 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms