RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 PREX2Q70Z35 1606 aa19.61■□□□□ 0.73
VMP1-202ENST00000585847 ARAP3Q8WWN8 1544 aa19.59■□□□□ 0.73
VMP1-202ENST00000585847 PPARGC1BQ86YN6 1023 aaKnown RBP19.57■□□□□ 0.72
VMP1-202ENST00000585847 PHLDB1Q86UU1 1377 aa19.56■□□□□ 0.72
VMP1-202ENST00000585847 ILDR1Q86SU0 546 aaPredicted RBP19.55■□□□□ 0.72
VMP1-202ENST00000585847 CCNB3Q8WWL7 1395 aa19.55■□□□□ 0.72
VMP1-202ENST00000585847 ITSN2Q9NZM3 1697 aa19.53■□□□□ 0.72
VMP1-202ENST00000585847 FANCAO15360 1455 aa19.53■□□□□ 0.72
VMP1-202ENST00000585847 NEO1Q92859 1461 aa19.53■□□□□ 0.72
VMP1-202ENST00000585847 HECW2Q9P2P5 1572 aa19.53■□□□□ 0.72
VMP1-202ENST00000585847 ARHGAP5Q13017 1502 aa19.52■□□□□ 0.72
VMP1-202ENST00000585847 SAMD9LQ8IVG5 1584 aa19.51■□□□□ 0.71
VMP1-202ENST00000585847 AKNAQ7Z591 1439 aa19.51■□□□□ 0.71
VMP1-202ENST00000585847 MYOM3Q5VTT5 1437 aa19.5■□□□□ 0.71
VMP1-202ENST00000585847 CFAP74Q9C0B2 1584 aa19.49■□□□□ 0.71
VMP1-202ENST00000585847 EFCAB2Q5VUJ9 269 aa19.48■□□□□ 0.71
VMP1-202ENST00000585847 ARHGEF12Q9NZN5 1544 aa19.47■□□□□ 0.71
VMP1-202ENST00000585847 CFDP1Q9UEE9 299 aaPredicted RBP19.47■□□□□ 0.71
VMP1-202ENST00000585847 ZNF644Q9H582 1327 aaPredicted RBP19.46■□□□□ 0.71
VMP1-202ENST00000585847 ABCC1P33527 1531 aa19.46■□□□□ 0.71
VMP1-202ENST00000585847 FRMPD1Q5SYB0 1578 aa19.44■□□□□ 0.7
VMP1-202ENST00000585847 MIA2Q96PC5 1412 aa19.44■□□□□ 0.7
VMP1-202ENST00000585847 FGD6Q6ZV73 1430 aa19.42■□□□□ 0.7
VMP1-202ENST00000585847 SCAPERQ9BY12 1400 aa19.42■□□□□ 0.7
VMP1-202ENST00000585847 RICTORQ6R327 1708 aa19.42■□□□□ 0.7
VMP1-202ENST00000585847 CAMSAP2Q08AD1 1489 aa19.41■□□□□ 0.7
VMP1-202ENST00000585847 PTPN23Q9H3S7 1636 aa19.41■□□□□ 0.7
VMP1-202ENST00000585847 ZNF777Q9ULD5 760 aaPredicted RBP19.41■□□□□ 0.7
VMP1-202ENST00000585847 TCOF1Q13428 1488 aaKnown RBP19.41■□□□□ 0.7
VMP1-202ENST00000585847 SYCP2Q9BX26 1530 aa19.41■□□□□ 0.7
VMP1-202ENST00000585847 TRIM26Q12899 539 aaPredicted RBP19.4■□□□□ 0.7
VMP1-202ENST00000585847 TRAPPC8Q9Y2L5 1435 aa19.4■□□□□ 0.7
VMP1-202ENST00000585847 MBD5Q9P267 1494 aa19.4■□□□□ 0.7
VMP1-202ENST00000585847 KIAA1107Q9UPP5 1409 aa19.39■□□□□ 0.69
VMP1-202ENST00000585847 DENND4BO75064 1496 aaPredicted RBP19.39■□□□□ 0.69
VMP1-202ENST00000585847 RAPGEF3O95398 923 aa19.38■□□□□ 0.69
VMP1-202ENST00000585847 POGZQ7Z3K3 1410 aa19.37■□□□□ 0.69
VMP1-202ENST00000585847 HNRNPMP52272 730 aaKnown RBP eCLIP19.37■□□□□ 0.692e-7■■■■□ 25.4
VMP1-202ENST00000585847 PLEKHH2Q8IVE3 1493 aa19.36■□□□□ 0.69
VMP1-202ENST00000585847 KDM5CP41229 1560 aa19.35■□□□□ 0.69
VMP1-202ENST00000585847 RRBP1Q9P2E9 1410 aaKnown RBP19.34■□□□□ 0.69
VMP1-202ENST00000585847 ARHGEF5Q12774 1597 aa19.33■□□□□ 0.69
VMP1-202ENST00000585847 AFAP1Q8N556 730 aa19.33■□□□□ 0.68
VMP1-202ENST00000585847 ZMYM4Q5VZL5 1548 aa19.32■□□□□ 0.68
VMP1-202ENST00000585847 ZNF518AQ6AHZ1 1483 aa19.31■□□□□ 0.68
VMP1-202ENST00000585847 CCDC141Q6ZP82 1450 aa19.28■□□□□ 0.68
VMP1-202ENST00000585847 ABCC5O15440 1437 aa19.28■□□□□ 0.68
VMP1-202ENST00000585847 KIDINS220Q9ULH0 1771 aa19.28■□□□□ 0.68
VMP1-202ENST00000585847 DNMT1P26358 1616 aaKnown RBP19.28■□□□□ 0.68
VMP1-202ENST00000585847 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.27■□□□□ 0.68
VMP1-202ENST00000585847 CROCC2H7BZ55 1655 aa19.27■□□□□ 0.67
VMP1-202ENST00000585847 MLH3Q9UHC1 1453 aa19.26■□□□□ 0.67
VMP1-202ENST00000585847 INO80Q9ULG1 1556 aaPredicted RBP19.26■□□□□ 0.67
VMP1-202ENST00000585847 ARID4BQ4LE39 1312 aaPredicted RBP19.25■□□□□ 0.67
VMP1-202ENST00000585847 DAPK1P53355 1430 aa19.25■□□□□ 0.67
VMP1-202ENST00000585847 YEATS2Q9ULM3 1422 aa19.25■□□□□ 0.67
VMP1-202ENST00000585847 PTPRMP28827 1452 aa19.25■□□□□ 0.67
VMP1-202ENST00000585847 PTPRKQ15262 1439 aa19.25■□□□□ 0.67
VMP1-202ENST00000585847 MAST1Q9Y2H9 1570 aa19.24■□□□□ 0.67
VMP1-202ENST00000585847 FAM50AQ14320 339 aaKnown RBP19.24■□□□□ 0.67
VMP1-202ENST00000585847 RSPH4AQ5TD94 716 aa19.24■□□□□ 0.67
VMP1-202ENST00000585847 ZFYVE16Q7Z3T8 1539 aa19.24■□□□□ 0.67
VMP1-202ENST00000585847 ADAMTSL3P82987 1691 aa19.24■□□□□ 0.67
VMP1-202ENST00000585847 MAGI2Q86UL8 1455 aa19.23■□□□□ 0.67
VMP1-202ENST00000585847 ABCA6Q8N139 1617 aa19.22■□□□□ 0.67
VMP1-202ENST00000585847 ATP7AQ04656 1500 aa19.21■□□□□ 0.67
VMP1-202ENST00000585847 ARHGEF40Q8TER5 1519 aa19.21■□□□□ 0.67
VMP1-202ENST00000585847 DIP2CQ9Y2E4 1556 aa19.21■□□□□ 0.67
VMP1-202ENST00000585847 SPAG9O60271 1321 aaKnown RBP19.21■□□□□ 0.67
VMP1-202ENST00000585847 SIGLEC1Q9BZZ2 1709 aa19.2■□□□□ 0.66
VMP1-202ENST00000585847 RTEL1-TNFRSF6BF6WH68 1400 aa19.2■□□□□ 0.66
VMP1-202ENST00000585847 SHANK2Q9UPX8 1470 aa19.2■□□□□ 0.66
VMP1-202ENST00000585847 BCORL1Q5H9F3 1711 aa19.2■□□□□ 0.66
VMP1-202ENST00000585847 MADDQ8WXG6 1647 aa19.18■□□□□ 0.66
VMP1-202ENST00000585847 C9orf84Q5VXU9 1444 aa19.18■□□□□ 0.66
VMP1-202ENST00000585847 ADGBQ8N7X0 1667 aa19.17■□□□□ 0.66
VMP1-202ENST00000585847 FBXO41Q8TF61 875 aa19.15■□□□□ 0.66
VMP1-202ENST00000585847 ADGRL2O95490 1459 aa19.15■□□□□ 0.66
VMP1-202ENST00000585847 TSPY4P0CV99 314 aa19.14■□□□□ 0.65
VMP1-202ENST00000585847 TSPY10P0CW01 314 aa19.14■□□□□ 0.65
VMP1-202ENST00000585847 ATP10AO60312 1499 aa19.14■□□□□ 0.65
VMP1-202ENST00000585847 PLXNC1O60486 1568 aa19.14■□□□□ 0.65
VMP1-202ENST00000585847 REREQ9P2R6 1566 aa19.13■□□□□ 0.65
VMP1-202ENST00000585847 RIMS1Q86UR5 1692 aaKnown RBP19.12■□□□□ 0.65
VMP1-202ENST00000585847 CHIC2Q9UKJ5 165 aa19.12■□□□□ 0.65
VMP1-202ENST00000585847 NCOA1Q15788 1441 aa19.11■□□□□ 0.65
VMP1-202ENST00000585847 PCGF6Q9BYE7 350 aa19.11■□□□□ 0.65
VMP1-202ENST00000585847 ITGAEP38570 1179 aa19.1■□□□□ 0.65
VMP1-202ENST00000585847 MYT1LQ9UL68 1186 aa19.1■□□□□ 0.65
VMP1-202ENST00000585847 A2MP01023 1474 aa19.09■□□□□ 0.65
VMP1-202ENST00000585847 LMTK3Q96Q04 1460 aa19.08■□□□□ 0.64
VMP1-202ENST00000585847 ROCK1Q13464 1354 aa19.07■□□□□ 0.64
VMP1-202ENST00000585847 PLPPR3Q6T4P5 718 aa19.07■□□□□ 0.64
VMP1-202ENST00000585847 DHX29Q7Z478 1369 aaKnown RBP19.06■□□□□ 0.64
VMP1-202ENST00000585847 AGLP35573 1532 aa19.06■□□□□ 0.64
VMP1-202ENST00000585847 RRP7BPQ9NSQ0 103 aa19.06■□□□□ 0.64
VMP1-202ENST00000585847 ANKRD30AQ9BXX3 1397 aa19.06■□□□□ 0.64
VMP1-202ENST00000585847 KIF15Q9NS87 1388 aa19.06■□□□□ 0.64
VMP1-202ENST00000585847 DUOX2Q9NRD8 1548 aa19.05■□□□□ 0.64
VMP1-202ENST00000585847 MLECQ14165 292 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms