RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 TTC37Q6PGP7 1564 aa15.75■□□□□ 0.11
LIG3-203ENST00000585370 LRRC9Q6ZRR7 1453 aa15.74■□□□□ 0.11
LIG3-203ENST00000585370 RICTORQ6R327 1708 aa15.72■□□□□ 0.11
LIG3-203ENST00000585370 ZEB1P37275 1124 aaPredicted RBP15.71■□□□□ 0.11
LIG3-203ENST00000585370 BCORL1Q5H9F3 1711 aa15.71■□□□□ 0.1
LIG3-203ENST00000585370 PLCH2O75038 1416 aa15.7■□□□□ 0.1
LIG3-203ENST00000585370 CCDC18Q5T9S5 1454 aa15.7■□□□□ 0.1
LIG3-203ENST00000585370 CFAP74Q9C0B2 1584 aa15.69■□□□□ 0.1
LIG3-203ENST00000585370 RRBP1Q9P2E9 1410 aaKnown RBP15.68■□□□□ 0.1
LIG3-203ENST00000585370 ARHGEF40Q8TER5 1519 aa15.68■□□□□ 0.1
LIG3-203ENST00000585370 MADDQ8WXG6 1647 aa15.68■□□□□ 0.1
LIG3-203ENST00000585370 YEATS2Q9ULM3 1422 aa15.68■□□□□ 0.1
LIG3-203ENST00000585370 CDK11AQ9UQ88 783 aaPredicted RBP15.67■□□□□ 0.1
LIG3-203ENST00000585370 SCAPERQ9BY12 1400 aa15.67■□□□□ 0.1
LIG3-203ENST00000585370 HECW1Q76N89 1606 aa15.66■□□□□ 0.1
LIG3-203ENST00000585370 ZMYM4Q5VZL5 1548 aa15.66■□□□□ 0.1
LIG3-203ENST00000585370 EFCAB2Q5VUJ9 269 aa15.65■□□□□ 0.1
LIG3-203ENST00000585370 MAGI2Q86UL8 1455 aa15.65■□□□□ 0.1
LIG3-203ENST00000585370 MTUS2Q5JR59 1369 aa15.64■□□□□ 0.09
LIG3-203ENST00000585370 ZFYVE16Q7Z3T8 1539 aa15.63■□□□□ 0.09
LIG3-203ENST00000585370 CCNB3Q8WWL7 1395 aa15.63■□□□□ 0.09
LIG3-203ENST00000585370 SIGLEC1Q9BZZ2 1709 aa15.63■□□□□ 0.09
LIG3-203ENST00000585370 POGZQ7Z3K3 1410 aa15.63■□□□□ 0.09
LIG3-203ENST00000585370 TROQ12816 1431 aaPredicted RBP15.62■□□□□ 0.09
LIG3-203ENST00000585370 MLECQ14165 292 aa15.62■□□□□ 0.09
LIG3-203ENST00000585370 KIF14Q15058 1648 aa15.61■□□□□ 0.09
LIG3-203ENST00000585370 RIMS1Q86UR5 1692 aaKnown RBP15.6■□□□□ 0.09
LIG3-203ENST00000585370 LMTK3Q96Q04 1460 aa15.6■□□□□ 0.09
LIG3-203ENST00000585370 PLPPR3Q6T4P5 718 aa15.6■□□□□ 0.09
LIG3-203ENST00000585370 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.6■□□□□ 0.09
LIG3-203ENST00000585370 LRRIQ1Q96JM4 1722 aa15.6■□□□□ 0.09
LIG3-203ENST00000585370 AFAP1Q8N556 730 aa15.59■□□□□ 0.09
LIG3-203ENST00000585370 MYO5CQ9NQX4 1742 aa15.59■□□□□ 0.09
LIG3-203ENST00000585370 EHBP1L1Q8N3D4 1523 aa15.58■□□□□ 0.09
LIG3-203ENST00000585370 ATP10AO60312 1499 aa15.58■□□□□ 0.08
LIG3-203ENST00000585370 ARHGAP5Q13017 1502 aa15.55■□□□□ 0.08
LIG3-203ENST00000585370 HSPA2P54652 639 aa15.55■□□□□ 0.08
LIG3-203ENST00000585370 C9orf84Q5VXU9 1444 aa15.54■□□□□ 0.08
LIG3-203ENST00000585370 ZNF518AQ6AHZ1 1483 aa15.53■□□□□ 0.08
LIG3-203ENST00000585370 SUPT6HQ7KZ85 1726 aaKnown RBP15.53■□□□□ 0.08
LIG3-203ENST00000585370 CCER1Q8TC90 406 aaPredicted RBP15.52■□□□□ 0.08
LIG3-203ENST00000585370 FBXO41Q8TF61 875 aa15.52■□□□□ 0.08
LIG3-203ENST00000585370 ARHGEF12Q9NZN5 1544 aa15.52■□□□□ 0.07
LIG3-203ENST00000585370 NCOA2Q15596 1464 aa15.52■□□□□ 0.07
LIG3-203ENST00000585370 CDC42BPBQ9Y5S2 1711 aa15.51■□□□□ 0.07
LIG3-203ENST00000585370 KDM5CP41229 1560 aa15.51■□□□□ 0.07
LIG3-203ENST00000585370 FER1L4A9Z1Z3 1794 aa15.51■□□□□ 0.07
LIG3-203ENST00000585370 CEBPAP49715 358 aaPredicted RBP15.5■□□□□ 0.07
LIG3-203ENST00000585370 MYT1LQ9UL68 1186 aa15.5■□□□□ 0.07
LIG3-203ENST00000585370 MYOM3Q5VTT5 1437 aa15.5■□□□□ 0.07
LIG3-203ENST00000585370 FGD6Q6ZV73 1430 aa15.49■□□□□ 0.07
LIG3-203ENST00000585370 TRAPPC8Q9Y2L5 1435 aa15.49■□□□□ 0.07
LIG3-203ENST00000585370 MLH3Q9UHC1 1453 aa15.47■□□□□ 0.07
LIG3-203ENST00000585370 FAM50AQ14320 339 aaKnown RBP15.47■□□□□ 0.07
LIG3-203ENST00000585370 PREX2Q70Z35 1606 aa15.46■□□□□ 0.07
LIG3-203ENST00000585370 MIA2Q96PC5 1412 aa15.46■□□□□ 0.07
LIG3-203ENST00000585370 DIP2CQ9Y2E4 1556 aa15.45■□□□□ 0.06
LIG3-203ENST00000585370 ABCC1P33527 1531 aa15.45■□□□□ 0.06
LIG3-203ENST00000585370 ABCA6Q8N139 1617 aa15.43■□□□□ 0.06
LIG3-203ENST00000585370 CDC42BPAQ5VT25 1732 aa15.43■□□□□ 0.06
LIG3-203ENST00000585370 ZNF777Q9ULD5 760 aaPredicted RBP15.43■□□□□ 0.06
LIG3-203ENST00000585370 REREQ9P2R6 1566 aa15.43■□□□□ 0.06
LIG3-203ENST00000585370 GPATCH8Q9UKJ3 1502 aaKnown RBP15.42■□□□□ 0.06
LIG3-203ENST00000585370 CLSPNQ9HAW4 1339 aa15.42■□□□□ 0.06
LIG3-203ENST00000585370 ITSN2Q9NZM3 1697 aa15.41■□□□□ 0.06
LIG3-203ENST00000585370 AGLP35573 1532 aa15.4■□□□□ 0.06
LIG3-203ENST00000585370 ITGAEP38570 1179 aa15.4■□□□□ 0.06
LIG3-203ENST00000585370 HNRNPMP52272 730 aaKnown RBP eCLIP15.4■□□□□ 0.06
LIG3-203ENST00000585370 SETD1BQ9UPS6 1966 aaKnown RBP15.4■□□□□ 0.06
LIG3-203ENST00000585370 TCOF1Q13428 1488 aaKnown RBP15.4■□□□□ 0.06
LIG3-203ENST00000585370 KIDINS220Q9ULH0 1771 aa15.39■□□□□ 0.05
LIG3-203ENST00000585370 PREX1Q8TCU6 1659 aa15.38■□□□□ 0.05
LIG3-203ENST00000585370 SAMD9LQ8IVG5 1584 aa15.38■□□□□ 0.05
LIG3-203ENST00000585370 SETD5Q9C0A6 1442 aa15.38■□□□□ 0.05
LIG3-203ENST00000585370 CFDP1Q9UEE9 299 aaPredicted RBP15.38■□□□□ 0.05
LIG3-203ENST00000585370 ACIN1Q9UKV3 1341 aaKnown RBP15.37■□□□□ 0.05
LIG3-203ENST00000585370 PTPN23Q9H3S7 1636 aa15.36■□□□□ 0.05
LIG3-203ENST00000585370 CERKQ8TCT0 537 aa15.36■□□□□ 0.05
LIG3-203ENST00000585370 ESF1Q9H501 851 aaKnown RBP15.36■□□□□ 0.05
LIG3-203ENST00000585370 SYCP2Q9BX26 1530 aa15.36■□□□□ 0.05
LIG3-203ENST00000585370 SPAG9O60271 1321 aaKnown RBP15.36■□□□□ 0.05
LIG3-203ENST00000585370 UHRF1BP1Q6BDS2 1440 aa15.35■□□□□ 0.05
LIG3-203ENST00000585370 KIAA1107Q9UPP5 1409 aa15.35■□□□□ 0.05
LIG3-203ENST00000585370 C3P01024 1663 aa15.35■□□□□ 0.05
LIG3-203ENST00000585370 STRCQ7RTU9 1775 aa15.33■□□□□ 0.04
LIG3-203ENST00000585370 DMRT2Q9Y5R5 561 aa15.32■□□□□ 0.04
LIG3-203ENST00000585370 ZNF644Q9H582 1327 aaPredicted RBP15.32■□□□□ 0.04
LIG3-203ENST00000585370 RAB3GAP2Q9H2M9 1393 aa15.31■□□□□ 0.04
LIG3-203ENST00000585370 CNTLNQ9NXG0 1405 aa15.31■□□□□ 0.04
LIG3-203ENST00000585370 PLEKHH2Q8IVE3 1493 aa15.31■□□□□ 0.04
LIG3-203ENST00000585370 ZMYM3Q14202 1370 aa15.3■□□□□ 0.04
LIG3-203ENST00000585370 DHX57Q6P158 1386 aaKnown RBP15.29■□□□□ 0.04
LIG3-203ENST00000585370 ATP7AQ04656 1500 aa15.28■□□□□ 0.04
LIG3-203ENST00000585370 HFM1A2PYH4 1435 aa15.28■□□□□ 0.04
LIG3-203ENST00000585370 A2MP01023 1474 aa15.27■□□□□ 0.04
LIG3-203ENST00000585370 MBD5Q9P267 1494 aa15.27■□□□□ 0.03
LIG3-203ENST00000585370 GGT6Q6P531 493 aa15.26■□□□□ 0.03
LIG3-203ENST00000585370 PLXNC1O60486 1568 aa15.26■□□□□ 0.03
LIG3-203ENST00000585370 INO80Q9ULG1 1556 aaPredicted RBP15.26■□□□□ 0.03
LIG3-203ENST00000585370 PTPRKQ15262 1439 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms