RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 MAGI3Q5TCQ9 1506 aa15.4■□□□□ 0.06
SMCHD1-212ENST00000585229 TTBK1Q5TCY1 1321 aaPredicted RBP15.4■□□□□ 0.06
SMCHD1-212ENST00000585229 KANK4Q5T7N3 995 aaPredicted RBP15.36■□□□□ 0.05
SMCHD1-212ENST00000585229 ATP1B4Q9UN42 357 aaPredicted RBP15.35■□□□□ 0.05
SMCHD1-212ENST00000585229 SUPT6HQ7KZ85 1726 aaKnown RBP15.34■□□□□ 0.05
SMCHD1-212ENST00000585229 TROQ12816 1431 aaPredicted RBP15.34■□□□□ 0.05
SMCHD1-212ENST00000585229 MTUS2Q5JR59 1369 aa15.33■□□□□ 0.04
SMCHD1-212ENST00000585229 CDK11AQ9UQ88 783 aaPredicted RBP15.3■□□□□ 0.04
SMCHD1-212ENST00000585229 KIF14Q15058 1648 aa15.28■□□□□ 0.04
SMCHD1-212ENST00000585229 FKBP8Q14318 412 aa15.28■□□□□ 0.04
SMCHD1-212ENST00000585229 MAPKBP1O60336 1514 aa15.27■□□□□ 0.04
SMCHD1-212ENST00000585229 NCOA2Q15596 1464 aa15.27■□□□□ 0.04
SMCHD1-212ENST00000585229 SPDYE2BA6NHP3 402 aa15.27■□□□□ 0.04
SMCHD1-212ENST00000585229 ARID3CA6NKF2 412 aa15.27■□□□□ 0.04
SMCHD1-212ENST00000585229 SPDYE6P0CI01 402 aa15.27■□□□□ 0.04
SMCHD1-212ENST00000585229 SPDYE2Q495Y8 402 aa15.27■□□□□ 0.04
SMCHD1-212ENST00000585229 SPDYE4A6NLX3 237 aa15.26■□□□□ 0.03
SMCHD1-212ENST00000585229 ABCC10Q5T3U5 1492 aa15.26■□□□□ 0.03
SMCHD1-212ENST00000585229 WDR7Q9Y4E6 1490 aa15.26■□□□□ 0.03
SMCHD1-212ENST00000585229 CYB5RLQ6IPT4 315 aa15.25■□□□□ 0.03
SMCHD1-212ENST00000585229 PPARGC1BQ86YN6 1023 aaKnown RBP15.25■□□□□ 0.03
SMCHD1-212ENST00000585229 PLEKHD1A6NEE1 506 aa15.24■□□□□ 0.03
SMCHD1-212ENST00000585229 RBM42Q9BTD8 480 aaKnown RBP15.24■□□□□ 0.03
SMCHD1-212ENST00000585229 DNAJC5Q9H3Z4 198 aa15.24■□□□□ 0.03
SMCHD1-212ENST00000585229 PHLDB1Q86UU1 1377 aa15.24■□□□□ 0.03
SMCHD1-212ENST00000585229 SSUH2Q9Y2M2 353 aa15.23■□□□□ 0.03
SMCHD1-212ENST00000585229 ASXL2Q76L83 1435 aa15.23■□□□□ 0.03
SMCHD1-212ENST00000585229 RRBP1Q9P2E9 1410 aaKnown RBP15.23■□□□□ 0.03
SMCHD1-212ENST00000585229 ITSN2Q9NZM3 1697 aa15.22■□□□□ 0.03
SMCHD1-212ENST00000585229 CDC42BPAQ5VT25 1732 aa15.21■□□□□ 0.03
SMCHD1-212ENST00000585229 MYOM3Q5VTT5 1437 aa15.21■□□□□ 0.03
SMCHD1-212ENST00000585229 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.21■□□□□ 0.03
SMCHD1-212ENST00000585229 TTC37Q6PGP7 1564 aa15.2■□□□□ 0.02
SMCHD1-212ENST00000585229 ZNF692Q9BU19 519 aaPredicted RBP15.2■□□□□ 0.02
SMCHD1-212ENST00000585229 ABCA9Q8IUA7 1624 aa15.2■□□□□ 0.02
SMCHD1-212ENST00000585229 PREX2Q70Z35 1606 aa15.19■□□□□ 0.02
SMCHD1-212ENST00000585229 NPM1P06748 294 aaKnown RBP eCLIP15.19■□□□□ 0.02
SMCHD1-212ENST00000585229 FGD6Q6ZV73 1430 aa15.17■□□□□ 0.02
SMCHD1-212ENST00000585229 MIA2Q96PC5 1412 aa15.17■□□□□ 0.02
SMCHD1-212ENST00000585229 MYO5CQ9NQX4 1742 aa15.17■□□□□ 0.02
SMCHD1-212ENST00000585229 ARAP3Q8WWN8 1544 aa15.17■□□□□ 0.02
SMCHD1-212ENST00000585229 GPATCH8Q9UKJ3 1502 aaKnown RBP15.17■□□□□ 0.02
SMCHD1-212ENST00000585229 GLI2P10070 1586 aa15.16■□□□□ 0.02
SMCHD1-212ENST00000585229 TCOF1Q13428 1488 aaKnown RBP15.16■□□□□ 0.02
SMCHD1-212ENST00000585229 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.16■□□□□ 0.02
SMCHD1-212ENST00000585229 CDC42BPBQ9Y5S2 1711 aa15.16■□□□□ 0.02
SMCHD1-212ENST00000585229 CCNB3Q8WWL7 1395 aa15.15■□□□□ 0.02
SMCHD1-212ENST00000585229 PTPN23Q9H3S7 1636 aa15.15■□□□□ 0.02
SMCHD1-212ENST00000585229 TRIM26Q12899 539 aaPredicted RBP15.15■□□□□ 0.02
SMCHD1-212ENST00000585229 DIP2BQ9P265 1576 aa15.13■□□□□ 0.01
SMCHD1-212ENST00000585229 AKT1S1Q96B36 256 aa15.1■□□□□ 0.01
SMCHD1-212ENST00000585229 MAP3K4Q9Y6R4 1608 aa15.1■□□□□ 0.01
SMCHD1-212ENST00000585229 PLCH2O75038 1416 aa15.09■□□□□ 0.01
SMCHD1-212ENST00000585229 PROM2Q8N271 834 aa15.09■□□□□ 0.01
SMCHD1-212ENST00000585229 KIF13AQ9H1H9 1805 aa15.08■□□□□ 0.01
SMCHD1-212ENST00000585229 KCNH8Q96L42 1107 aa15.07■□□□□ 0
SMCHD1-212ENST00000585229 CAMSAP2Q08AD1 1489 aa15.07■□□□□ 0
SMCHD1-212ENST00000585229 SAMD9LQ8IVG5 1584 aa15.07■□□□□ 0
SMCHD1-212ENST00000585229 ARHGAP5Q13017 1502 aa15.05■□□□□ -0
SMCHD1-212ENST00000585229 CFAP74Q9C0B2 1584 aa15.05■□□□□ -0
SMCHD1-212ENST00000585229 DNMT1P26358 1616 aaKnown RBP15.05■□□□□ -0
SMCHD1-212ENST00000585229 CROCC2H7BZ55 1655 aa15.03■□□□□ -0
SMCHD1-212ENST00000585229 ARHGEF5Q12774 1597 aa15.03■□□□□ -0
SMCHD1-212ENST00000585229 CFDP1Q9UEE9 299 aaPredicted RBP15.03■□□□□ -0
SMCHD1-212ENST00000585229 PPRC1Q5VV67 1664 aaKnown RBP15.03■□□□□ -0
SMCHD1-212ENST00000585229 ABCC1P33527 1531 aa15.02■□□□□ -0
SMCHD1-212ENST00000585229 PLEKHH2Q8IVE3 1493 aa15.02■□□□□ -0
SMCHD1-212ENST00000585229 CD109Q6YHK3 1445 aa15.02■□□□□ -0
SMCHD1-212ENST00000585229 KIAA1107Q9UPP5 1409 aa15.01□□□□□ -0.01
SMCHD1-212ENST00000585229 FANCAO15360 1455 aa15□□□□□ -0.01
SMCHD1-212ENST00000585229 MBD5Q9P267 1494 aa15□□□□□ -0.01
SMCHD1-212ENST00000585229 REM2Q8IYK8 340 aaPredicted RBP14.99□□□□□ -0.01
SMCHD1-212ENST00000585229 NEO1Q92859 1461 aa14.99□□□□□ -0.01
SMCHD1-212ENST00000585229 SHANK2Q9UPX8 1470 aa14.99□□□□□ -0.01
SMCHD1-212ENST00000585229 SYCP2Q9BX26 1530 aa14.98□□□□□ -0.01
SMCHD1-212ENST00000585229 EFCAB2Q5VUJ9 269 aa14.98□□□□□ -0.01
SMCHD1-212ENST00000585229 PCGF6Q9BYE7 350 aa14.98□□□□□ -0.01
SMCHD1-212ENST00000585229 DAPK1P53355 1430 aa14.98□□□□□ -0.01
SMCHD1-212ENST00000585229 ZNF644Q9H582 1327 aaPredicted RBP14.97□□□□□ -0.01
SMCHD1-212ENST00000585229 FAM50AQ14320 339 aaKnown RBP14.97□□□□□ -0.01
SMCHD1-212ENST00000585229 ABCC5O15440 1437 aa14.97□□□□□ -0.01
SMCHD1-212ENST00000585229 ARHGEF12Q9NZN5 1544 aa14.97□□□□□ -0.01
SMCHD1-212ENST00000585229 PTPRKQ15262 1439 aa14.96□□□□□ -0.01
SMCHD1-212ENST00000585229 AKNAQ7Z591 1439 aa14.96□□□□□ -0.01
SMCHD1-212ENST00000585229 MAST1Q9Y2H9 1570 aa14.96□□□□□ -0.01
SMCHD1-212ENST00000585229 ADGBQ8N7X0 1667 aa14.96□□□□□ -0.01
SMCHD1-212ENST00000585229 CCDC141Q6ZP82 1450 aa14.95□□□□□ -0.02
SMCHD1-212ENST00000585229 FAM69CQ0P6D2 419 aa14.95□□□□□ -0.02
SMCHD1-212ENST00000585229 ADGRL2O95490 1459 aa14.94□□□□□ -0.02
SMCHD1-212ENST00000585229 TEX14Q8IWB6 1497 aa14.94□□□□□ -0.02
SMCHD1-212ENST00000585229 ADGRL1O94910 1474 aa14.93□□□□□ -0.02
SMCHD1-212ENST00000585229 GCC2Q8IWJ2 1684 aa14.93□□□□□ -0.02
SMCHD1-212ENST00000585229 TSPOAP1O95153 1857 aa14.93□□□□□ -0.02
SMCHD1-212ENST00000585229 RSPH4AQ5TD94 716 aa14.92□□□□□ -0.02
SMCHD1-212ENST00000585229 ZNF777Q9ULD5 760 aaPredicted RBP14.92□□□□□ -0.02
SMCHD1-212ENST00000585229 ROCK1Q13464 1354 aa14.92□□□□□ -0.02
SMCHD1-212ENST00000585229 KDM5CP41229 1560 aa14.9□□□□□ -0.02
SMCHD1-212ENST00000585229 PLXNC1O60486 1568 aa14.9□□□□□ -0.02
SMCHD1-212ENST00000585229 HFM1A2PYH4 1435 aa14.89□□□□□ -0.03
SMCHD1-212ENST00000585229 TRAPPC8Q9Y2L5 1435 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms