RNA–Protein interactions for RNA: ENST00000584944.5

TRAF4-215, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 825 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-215ENST00000584944 KIF14Q15058 1648 aa21.62■■□□□ 1.05
TRAF4-215ENST00000584944 CFAP74Q9C0B2 1584 aa21.62■■□□□ 1.05
TRAF4-215ENST00000584944 BCORL1Q5H9F3 1711 aa21.62■■□□□ 1.05
TRAF4-215ENST00000584944 ARID4BQ4LE39 1312 aaPredicted RBP21.6■■□□□ 1.05
TRAF4-215ENST00000584944 ARHGEF40Q8TER5 1519 aa21.6■■□□□ 1.05
TRAF4-215ENST00000584944 TIAM1Q13009 1591 aa21.59■■□□□ 1.05
TRAF4-215ENST00000584944 PLCH2O75038 1416 aa21.56■■□□□ 1.04
TRAF4-215ENST00000584944 EHBP1L1Q8N3D4 1523 aa21.56■■□□□ 1.04
TRAF4-215ENST00000584944 MAP3K1Q13233 1512 aa21.55■■□□□ 1.04
TRAF4-215ENST00000584944 ZMYM4Q5VZL5 1548 aa21.55■■□□□ 1.04
TRAF4-215ENST00000584944 MADDQ8WXG6 1647 aa21.55■■□□□ 1.04
TRAF4-215ENST00000584944 YEATS2Q9ULM3 1422 aa21.52■■□□□ 1.04
TRAF4-215ENST00000584944 MAGI2Q86UL8 1455 aa21.52■■□□□ 1.03
TRAF4-215ENST00000584944 CCNB3Q8WWL7 1395 aa21.51■■□□□ 1.03
TRAF4-215ENST00000584944 SCAPERQ9BY12 1400 aa21.51■■□□□ 1.03
TRAF4-215ENST00000584944 LRRC9Q6ZRR7 1453 aa21.51■■□□□ 1.03
TRAF4-215ENST00000584944 ZFYVE16Q7Z3T8 1539 aa21.5■■□□□ 1.03
TRAF4-215ENST00000584944 POGZQ7Z3K3 1410 aa21.48■■□□□ 1.03
TRAF4-215ENST00000584944 EFCAB2Q5VUJ9 269 aa21.48■■□□□ 1.03
TRAF4-215ENST00000584944 RIMS1Q86UR5 1692 aaKnown RBP21.47■■□□□ 1.03
TRAF4-215ENST00000584944 SIGLEC1Q9BZZ2 1709 aa21.47■■□□□ 1.03
TRAF4-215ENST00000584944 KANK4Q5T7N3 995 aaPredicted RBP21.47■■□□□ 1.03
TRAF4-215ENST00000584944 SUPT6HQ7KZ85 1726 aaKnown RBP21.46■■□□□ 1.03
TRAF4-215ENST00000584944 MYO5CQ9NQX4 1742 aa21.46■■□□□ 1.03
TRAF4-215ENST00000584944 ARHGAP5Q13017 1502 aa21.45■■□□□ 1.02
TRAF4-215ENST00000584944 CFDP1Q9UEE9 299 aaPredicted RBP21.44■■□□□ 1.02
TRAF4-215ENST00000584944 ZNF777Q9ULD5 760 aaPredicted RBP21.44■■□□□ 1.02
TRAF4-215ENST00000584944 LMTK3Q96Q04 1460 aa21.44■■□□□ 1.02
TRAF4-215ENST00000584944 NCOA2Q15596 1464 aa21.43■■□□□ 1.02
TRAF4-215ENST00000584944 ATP10AO60312 1499 aa21.4■■□□□ 1.02
TRAF4-215ENST00000584944 MLECQ14165 292 aa21.39■■□□□ 1.01
TRAF4-215ENST00000584944 PPARGC1BQ86YN6 1023 aaKnown RBP21.38■■□□□ 1.01
TRAF4-215ENST00000584944 C9orf84Q5VXU9 1444 aa21.37■■□□□ 1.01
TRAF4-215ENST00000584944 PREX2Q70Z35 1606 aa21.37■■□□□ 1.01
TRAF4-215ENST00000584944 GPATCH8Q9UKJ3 1502 aaKnown RBP21.36■■□□□ 1.01
TRAF4-215ENST00000584944 AFAP1Q8N556 730 aa21.36■■□□□ 1.01
TRAF4-215ENST00000584944 ZNF518AQ6AHZ1 1483 aa21.36■■□□□ 1.01
TRAF4-215ENST00000584944 ITSN2Q9NZM3 1697 aa21.36■■□□□ 1.01
TRAF4-215ENST00000584944 PLPPR3Q6T4P5 718 aa21.35■■□□□ 1.01
TRAF4-215ENST00000584944 FER1L4A9Z1Z3 1794 aa21.34■■□□□ 1.01
TRAF4-215ENST00000584944 KDM5CP41229 1560 aa21.34■■□□□ 1.01
TRAF4-215ENST00000584944 ARHGEF12Q9NZN5 1544 aa21.34■■□□□ 1.01
TRAF4-215ENST00000584944 CDC42BPBQ9Y5S2 1711 aa21.33■■□□□ 1.01
TRAF4-215ENST00000584944 FBXO41Q8TF61 875 aa21.33■■□□□ 1.01
TRAF4-215ENST00000584944 CDC42BPAQ5VT25 1732 aa21.32■■□□□ 1
TRAF4-215ENST00000584944 HSPA2P54652 639 aa21.32■■□□□ 1
TRAF4-215ENST00000584944 MYT1LQ9UL68 1186 aa21.32■■□□□ 1
TRAF4-215ENST00000584944 MYOM3Q5VTT5 1437 aa21.3■■□□□ 1
TRAF4-215ENST00000584944 PLEKHH2Q8IVE3 1493 aa21.29■■□□□ 1
TRAF4-215ENST00000584944 MLH3Q9UHC1 1453 aa21.26■□□□□ 0.99
TRAF4-215ENST00000584944 DIP2CQ9Y2E4 1556 aa21.26■□□□□ 0.99
TRAF4-215ENST00000584944 TRAPPC8Q9Y2L5 1435 aa21.25■□□□□ 0.99
TRAF4-215ENST00000584944 ABCC1P33527 1531 aa21.24■□□□□ 0.99
TRAF4-215ENST00000584944 REREQ9P2R6 1566 aa21.24■□□□□ 0.99
TRAF4-215ENST00000584944 MIA2Q96PC5 1412 aa21.24■□□□□ 0.99
TRAF4-215ENST00000584944 CEBPAP49715 358 aaPredicted RBP21.24■□□□□ 0.99
TRAF4-215ENST00000584944 HNRNPMP52272 730 aaKnown RBP eCLIP21.23■□□□□ 0.99
TRAF4-215ENST00000584944 ZNF644Q9H582 1327 aaPredicted RBP21.23■□□□□ 0.99
TRAF4-215ENST00000584944 FAM50AQ14320 339 aaKnown RBP21.22■□□□□ 0.99
TRAF4-215ENST00000584944 ABCA6Q8N139 1617 aa21.22■□□□□ 0.99
TRAF4-215ENST00000584944 SAMD9LQ8IVG5 1584 aa21.21■□□□□ 0.99
TRAF4-215ENST00000584944 KIAA1107Q9UPP5 1409 aa21.21■□□□□ 0.99
TRAF4-215ENST00000584944 CAMSAP2Q08AD1 1489 aa21.2■□□□□ 0.98
TRAF4-215ENST00000584944 FGD6Q6ZV73 1430 aa21.2■□□□□ 0.98
TRAF4-215ENST00000584944 SYCP2Q9BX26 1530 aa21.19■□□□□ 0.98
TRAF4-215ENST00000584944 PREX1Q8TCU6 1659 aa21.18■□□□□ 0.98
TRAF4-215ENST00000584944 SETD1BQ9UPS6 1966 aaKnown RBP21.18■□□□□ 0.98
TRAF4-215ENST00000584944 RSPH4AQ5TD94 716 aa21.18■□□□□ 0.98
TRAF4-215ENST00000584944 AGLP35573 1532 aa21.18■□□□□ 0.98
TRAF4-215ENST00000584944 KIDINS220Q9ULH0 1771 aa21.17■□□□□ 0.98
TRAF4-215ENST00000584944 TSPY4P0CV99 314 aa21.16■□□□□ 0.98
TRAF4-215ENST00000584944 TSPY10P0CW01 314 aa21.16■□□□□ 0.98
TRAF4-215ENST00000584944 SPAG9O60271 1321 aaKnown RBP21.15■□□□□ 0.98
TRAF4-215ENST00000584944 PTPN23Q9H3S7 1636 aa21.14■□□□□ 0.97
TRAF4-215ENST00000584944 CCDC141Q6ZP82 1450 aa21.11■□□□□ 0.97
TRAF4-215ENST00000584944 UHRF1BP1Q6BDS2 1440 aa21.11■□□□□ 0.97
TRAF4-215ENST00000584944 C3P01024 1663 aa21.1■□□□□ 0.97
TRAF4-215ENST00000584944 CERKQ8TCT0 537 aa21.09■□□□□ 0.97
TRAF4-215ENST00000584944 ESF1Q9H501 851 aaKnown RBP21.09■□□□□ 0.97
TRAF4-215ENST00000584944 STRCQ7RTU9 1775 aa21.08■□□□□ 0.96
TRAF4-215ENST00000584944 TCOF1Q13428 1488 aaKnown RBP21.07■□□□□ 0.96
TRAF4-215ENST00000584944 MBD5Q9P267 1494 aa21.07■□□□□ 0.96
TRAF4-215ENST00000584944 CNTLNQ9NXG0 1405 aa21.06■□□□□ 0.96
TRAF4-215ENST00000584944 ITGAEP38570 1179 aa21.06■□□□□ 0.96
TRAF4-215ENST00000584944 ARHGEF5Q12774 1597 aa21.06■□□□□ 0.96
TRAF4-215ENST00000584944 DMRT2Q9Y5R5 561 aa21.05■□□□□ 0.96
TRAF4-215ENST00000584944 ATP7AQ04656 1500 aa21.02■□□□□ 0.96
TRAF4-215ENST00000584944 CHIC2Q9UKJ5 165 aa21■□□□□ 0.95
TRAF4-215ENST00000584944 RTEL1-TNFRSF6BF6WH68 1400 aa21■□□□□ 0.95
TRAF4-215ENST00000584944 DAPK1P53355 1430 aa21■□□□□ 0.95
TRAF4-215ENST00000584944 INO80Q9ULG1 1556 aaPredicted RBP21■□□□□ 0.95
TRAF4-215ENST00000584944 MROH2AA6NES4 1674 aa20.99■□□□□ 0.95
TRAF4-215ENST00000584944 ZMYM3Q14202 1370 aa20.98■□□□□ 0.95
TRAF4-215ENST00000584944 PLXNC1O60486 1568 aa20.98■□□□□ 0.95
TRAF4-215ENST00000584944 DNMT1P26358 1616 aaKnown RBP20.98■□□□□ 0.95
TRAF4-215ENST00000584944 A2MP01023 1474 aa20.98■□□□□ 0.95
TRAF4-215ENST00000584944 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.97■□□□□ 0.95
TRAF4-215ENST00000584944 PTPRTO14522 1441 aa20.97■□□□□ 0.95
TRAF4-215ENST00000584944 ABCC5O15440 1437 aa20.97■□□□□ 0.95
TRAF4-215ENST00000584944 RRBP1Q9P2E9 1410 aaKnown RBP20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms