RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 TEX14Q8IWB6 1497 aa16.8■□□□□ 0.28
TOP3A-216ENST00000583804 CDC42BPAQ5VT25 1732 aa16.8■□□□□ 0.28
TOP3A-216ENST00000583804 FANCAO15360 1455 aa16.8■□□□□ 0.28
TOP3A-216ENST00000583804 PREX2Q70Z35 1606 aa16.79■□□□□ 0.28
TOP3A-216ENST00000583804 ITSN2Q9NZM3 1697 aa16.79■□□□□ 0.28
TOP3A-216ENST00000583804 CDC42BPBQ9Y5S2 1711 aa16.78■□□□□ 0.28
TOP3A-216ENST00000583804 ARAP3Q8WWN8 1544 aa16.77■□□□□ 0.28
TOP3A-216ENST00000583804 ZNF644Q9H582 1327 aaPredicted RBP16.77■□□□□ 0.27
TOP3A-216ENST00000583804 PPRC1Q5VV67 1664 aaKnown RBP16.77■□□□□ 0.27
TOP3A-216ENST00000583804 AKNAQ7Z591 1439 aa16.76■□□□□ 0.27
TOP3A-216ENST00000583804 NEO1Q92859 1461 aa16.75■□□□□ 0.27
TOP3A-216ENST00000583804 MIA2Q96PC5 1412 aa16.75■□□□□ 0.27
TOP3A-216ENST00000583804 FGD6Q6ZV73 1430 aa16.74■□□□□ 0.27
TOP3A-216ENST00000583804 FAM50AQ14320 339 aaKnown RBP16.74■□□□□ 0.27
TOP3A-216ENST00000583804 CFAP74Q9C0B2 1584 aa16.73■□□□□ 0.27
TOP3A-216ENST00000583804 HNRNPMP52272 730 aaKnown RBP eCLIP16.73■□□□□ 0.27
TOP3A-216ENST00000583804 ADGRL1O94910 1474 aa16.72■□□□□ 0.27
TOP3A-216ENST00000583804 SCAPERQ9BY12 1400 aa16.71■□□□□ 0.27
TOP3A-216ENST00000583804 CAMSAP2Q08AD1 1489 aa16.71■□□□□ 0.27
TOP3A-216ENST00000583804 SAMD9LQ8IVG5 1584 aa16.7■□□□□ 0.26
TOP3A-216ENST00000583804 PHF23Q9BUL5 403 aaPredicted RBP16.7■□□□□ 0.26
TOP3A-216ENST00000583804 PTPN23Q9H3S7 1636 aa16.7■□□□□ 0.26
TOP3A-216ENST00000583804 PLEKHH2Q8IVE3 1493 aa16.69■□□□□ 0.26
TOP3A-216ENST00000583804 RAPGEF3O95398 923 aa16.69■□□□□ 0.26
TOP3A-216ENST00000583804 PCGF6Q9BYE7 350 aa16.69■□□□□ 0.26
TOP3A-216ENST00000583804 AFAP1Q8N556 730 aa16.67■□□□□ 0.26
TOP3A-216ENST00000583804 ABCC1P33527 1531 aa16.67■□□□□ 0.26
TOP3A-216ENST00000583804 DENND4BO75064 1496 aaPredicted RBP16.67■□□□□ 0.26
TOP3A-216ENST00000583804 KIAA1107Q9UPP5 1409 aa16.67■□□□□ 0.26
TOP3A-216ENST00000583804 TRIM26Q12899 539 aaPredicted RBP16.67■□□□□ 0.26
TOP3A-216ENST00000583804 SYCP2Q9BX26 1530 aa16.67■□□□□ 0.26
TOP3A-216ENST00000583804 ARHGEF12Q9NZN5 1544 aa16.67■□□□□ 0.26
TOP3A-216ENST00000583804 TCOF1Q13428 1488 aaKnown RBP16.66■□□□□ 0.26
TOP3A-216ENST00000583804 RRBP1Q9P2E9 1410 aaKnown RBP16.66■□□□□ 0.26
TOP3A-216ENST00000583804 ITGAEP38570 1179 aa16.66■□□□□ 0.26
TOP3A-216ENST00000583804 COL17A1Q9UMD9 1497 aaPredicted RBP16.66■□□□□ 0.26
TOP3A-216ENST00000583804 RSPH4AQ5TD94 716 aa16.65■□□□□ 0.26
TOP3A-216ENST00000583804 MYT1LQ9UL68 1186 aa16.65■□□□□ 0.26
TOP3A-216ENST00000583804 TRAPPC8Q9Y2L5 1435 aa16.64■□□□□ 0.25
TOP3A-216ENST00000583804 MBD5Q9P267 1494 aa16.63■□□□□ 0.25
TOP3A-216ENST00000583804 TSPY4P0CV99 314 aa16.63■□□□□ 0.25
TOP3A-216ENST00000583804 TSPY10P0CW01 314 aa16.63■□□□□ 0.25
TOP3A-216ENST00000583804 KDM6BO15054 1643 aa16.63■□□□□ 0.25
TOP3A-216ENST00000583804 POGZQ7Z3K3 1410 aa16.62■□□□□ 0.25
TOP3A-216ENST00000583804 ZNF518AQ6AHZ1 1483 aa16.61■□□□□ 0.25
TOP3A-216ENST00000583804 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.61■□□□□ 0.25
TOP3A-216ENST00000583804 CCDC141Q6ZP82 1450 aa16.6■□□□□ 0.25
TOP3A-216ENST00000583804 SPAG9O60271 1321 aaKnown RBP16.6■□□□□ 0.25
TOP3A-216ENST00000583804 ABCC5O15440 1437 aa16.59■□□□□ 0.25
TOP3A-216ENST00000583804 CHIC2Q9UKJ5 165 aa16.59■□□□□ 0.25
TOP3A-216ENST00000583804 ARHGEF5Q12774 1597 aa16.58■□□□□ 0.25
TOP3A-216ENST00000583804 DAPK1P53355 1430 aa16.58■□□□□ 0.25
TOP3A-216ENST00000583804 RICTORQ6R327 1708 aa16.57■□□□□ 0.24
TOP3A-216ENST00000583804 FRMPD1Q5SYB0 1578 aa16.56■□□□□ 0.24
TOP3A-216ENST00000583804 DNMT1P26358 1616 aaKnown RBP16.56■□□□□ 0.24
TOP3A-216ENST00000583804 C9orf84Q5VXU9 1444 aa16.54■□□□□ 0.24
TOP3A-216ENST00000583804 KDM5CP41229 1560 aa16.54■□□□□ 0.24
TOP3A-216ENST00000583804 MLH3Q9UHC1 1453 aa16.52■□□□□ 0.24
TOP3A-216ENST00000583804 PTPRKQ15262 1439 aa16.52■□□□□ 0.24
TOP3A-216ENST00000583804 ZMYM4Q5VZL5 1548 aa16.51■□□□□ 0.23
TOP3A-216ENST00000583804 RRP7BPQ9NSQ0 103 aa16.51■□□□□ 0.23
TOP3A-216ENST00000583804 HECW2Q9P2P5 1572 aa16.51■□□□□ 0.23
TOP3A-216ENST00000583804 MAGI2Q86UL8 1455 aa16.51■□□□□ 0.23
TOP3A-216ENST00000583804 SHANK2Q9UPX8 1470 aa16.51■□□□□ 0.23
TOP3A-216ENST00000583804 RTEL1-TNFRSF6BF6WH68 1400 aa16.5■□□□□ 0.23
TOP3A-216ENST00000583804 ATP7AQ04656 1500 aa16.5■□□□□ 0.23
TOP3A-216ENST00000583804 YEATS2Q9ULM3 1422 aa16.5■□□□□ 0.23
TOP3A-216ENST00000583804 CROCC2H7BZ55 1655 aa16.49■□□□□ 0.23
TOP3A-216ENST00000583804 ANKRD30AQ9BXX3 1397 aa16.49■□□□□ 0.23
TOP3A-216ENST00000583804 ZFYVE16Q7Z3T8 1539 aa16.48■□□□□ 0.23
TOP3A-216ENST00000583804 MAST1Q9Y2H9 1570 aa16.48■□□□□ 0.23
TOP3A-216ENST00000583804 KIDINS220Q9ULH0 1771 aa16.48■□□□□ 0.23
TOP3A-216ENST00000583804 INO80Q9ULG1 1556 aaPredicted RBP16.47■□□□□ 0.23
TOP3A-216ENST00000583804 NCOA1Q15788 1441 aa16.46■□□□□ 0.23
TOP3A-216ENST00000583804 KIF15Q9NS87 1388 aa16.45■□□□□ 0.22
TOP3A-216ENST00000583804 ATP10AO60312 1499 aa16.45■□□□□ 0.22
TOP3A-216ENST00000583804 ROCK1Q13464 1354 aa16.44■□□□□ 0.22
TOP3A-216ENST00000583804 ADGRL2O95490 1459 aa16.44■□□□□ 0.22
TOP3A-216ENST00000583804 ABCA6Q8N139 1617 aa16.43■□□□□ 0.22
TOP3A-216ENST00000583804 DIP2CQ9Y2E4 1556 aa16.43■□□□□ 0.22
TOP3A-216ENST00000583804 ADGBQ8N7X0 1667 aa16.43■□□□□ 0.22
TOP3A-216ENST00000583804 ARHGEF40Q8TER5 1519 aa16.43■□□□□ 0.22
TOP3A-216ENST00000583804 A2MP01023 1474 aa16.42■□□□□ 0.22
TOP3A-216ENST00000583804 ARID4BQ4LE39 1312 aaPredicted RBP16.42■□□□□ 0.22
TOP3A-216ENST00000583804 PLXNC1O60486 1568 aa16.41■□□□□ 0.22
TOP3A-216ENST00000583804 DHX29Q7Z478 1369 aaKnown RBP16.41■□□□□ 0.22
TOP3A-216ENST00000583804 DUOX2Q9NRD8 1548 aa16.39■□□□□ 0.21
TOP3A-216ENST00000583804 KIF3BO15066 747 aa16.38■□□□□ 0.21
TOP3A-216ENST00000583804 NAIPQ13075 1403 aa16.37■□□□□ 0.21
TOP3A-216ENST00000583804 ANKRD50Q9ULJ7 1429 aa16.37■□□□□ 0.21
TOP3A-216ENST00000583804 MLECQ14165 292 aa16.37■□□□□ 0.21
TOP3A-216ENST00000583804 HFM1A2PYH4 1435 aa16.36■□□□□ 0.21
TOP3A-216ENST00000583804 GGT6Q6P531 493 aa16.35■□□□□ 0.21
TOP3A-216ENST00000583804 ERBINQ96RT1 1412 aa16.34■□□□□ 0.21
TOP3A-216ENST00000583804 REREQ9P2R6 1566 aa16.34■□□□□ 0.21
TOP3A-216ENST00000583804 SETD5Q9C0A6 1442 aa16.33■□□□□ 0.21
TOP3A-216ENST00000583804 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.33■□□□□ 0.26e-6■□□□□ 8.3
TOP3A-216ENST00000583804 AGLP35573 1532 aa16.31■□□□□ 0.2
TOP3A-216ENST00000583804 SIGLEC1Q9BZZ2 1709 aa16.31■□□□□ 0.2
TOP3A-216ENST00000583804 GCC2Q8IWJ2 1684 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms