RNA–Protein interactions for RNA: ENST00000582122.1

TOP3A-212, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 553 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-212ENST00000582122 AKNAQ7Z591 1439 aa16.36■□□□□ 0.21
TOP3A-212ENST00000582122 TIAM1Q13009 1591 aa16.35■□□□□ 0.21
TOP3A-212ENST00000582122 ARHGAP5Q13017 1502 aa16.32■□□□□ 0.2
TOP3A-212ENST00000582122 CCNB3Q8WWL7 1395 aa16.32■□□□□ 0.2
TOP3A-212ENST00000582122 DENND4BO75064 1496 aaPredicted RBP16.31■□□□□ 0.2
TOP3A-212ENST00000582122 LRRC9Q6ZRR7 1453 aa16.3■□□□□ 0.2
TOP3A-212ENST00000582122 PREX2Q70Z35 1606 aa16.3■□□□□ 0.2
TOP3A-212ENST00000582122 SUPT6HQ7KZ85 1726 aaKnown RBP16.28■□□□□ 0.2
TOP3A-212ENST00000582122 CFDP1Q9UEE9 299 aaPredicted RBP16.28■□□□□ 0.2
TOP3A-212ENST00000582122 GPATCH8Q9UKJ3 1502 aaKnown RBP16.28■□□□□ 0.2
TOP3A-212ENST00000582122 PLEKHH2Q8IVE3 1493 aa16.27■□□□□ 0.19
TOP3A-212ENST00000582122 SCAPERQ9BY12 1400 aa16.27■□□□□ 0.19
TOP3A-212ENST00000582122 FBXO41Q8TF61 875 aa16.26■□□□□ 0.19
TOP3A-212ENST00000582122 RAPGEF3O95398 923 aa16.25■□□□□ 0.19
TOP3A-212ENST00000582122 CDC42BPAQ5VT25 1732 aa16.25■□□□□ 0.19
TOP3A-212ENST00000582122 CDC42BPBQ9Y5S2 1711 aa16.25■□□□□ 0.19
TOP3A-212ENST00000582122 ITSN2Q9NZM3 1697 aa16.24■□□□□ 0.19
TOP3A-212ENST00000582122 PTPRMP28827 1452 aa16.24■□□□□ 0.19
TOP3A-212ENST00000582122 NCOA2Q15596 1464 aa16.24■□□□□ 0.19
TOP3A-212ENST00000582122 MAGI2Q86UL8 1455 aa16.24■□□□□ 0.19
TOP3A-212ENST00000582122 ZNF518AQ6AHZ1 1483 aa16.23■□□□□ 0.19
TOP3A-212ENST00000582122 POGZQ7Z3K3 1410 aa16.23■□□□□ 0.19
TOP3A-212ENST00000582122 KIAA1107Q9UPP5 1409 aa16.23■□□□□ 0.19
TOP3A-212ENST00000582122 ADAMTSL3P82987 1691 aa16.23■□□□□ 0.19
TOP3A-212ENST00000582122 ZMYM4Q5VZL5 1548 aa16.21■□□□□ 0.19
TOP3A-212ENST00000582122 RICTORQ6R327 1708 aa16.2■□□□□ 0.18
TOP3A-212ENST00000582122 KANK4Q5T7N3 995 aaPredicted RBP16.2■□□□□ 0.18
TOP3A-212ENST00000582122 RSPH4AQ5TD94 716 aa16.2■□□□□ 0.18
TOP3A-212ENST00000582122 ZNF777Q9ULD5 760 aaPredicted RBP16.2■□□□□ 0.18
TOP3A-212ENST00000582122 ABCC1P33527 1531 aa16.19■□□□□ 0.18
TOP3A-212ENST00000582122 FRMPD1Q5SYB0 1578 aa16.18■□□□□ 0.18
TOP3A-212ENST00000582122 MIA2Q96PC5 1412 aa16.18■□□□□ 0.18
TOP3A-212ENST00000582122 BCORL1Q5H9F3 1711 aa16.16■□□□□ 0.18
TOP3A-212ENST00000582122 MYOM3Q5VTT5 1437 aa16.16■□□□□ 0.18
TOP3A-212ENST00000582122 ARHGEF40Q8TER5 1519 aa16.15■□□□□ 0.18
TOP3A-212ENST00000582122 KDM5CP41229 1560 aa16.15■□□□□ 0.18
TOP3A-212ENST00000582122 SAMD9LQ8IVG5 1584 aa16.15■□□□□ 0.18
TOP3A-212ENST00000582122 AFAP1Q8N556 730 aa16.15■□□□□ 0.18
TOP3A-212ENST00000582122 ZFYVE16Q7Z3T8 1539 aa16.14■□□□□ 0.18
TOP3A-212ENST00000582122 MYT1LQ9UL68 1186 aa16.14■□□□□ 0.17
TOP3A-212ENST00000582122 MADDQ8WXG6 1647 aa16.14■□□□□ 0.17
TOP3A-212ENST00000582122 MLH3Q9UHC1 1453 aa16.14■□□□□ 0.17
TOP3A-212ENST00000582122 ARID4BQ4LE39 1312 aaPredicted RBP16.14■□□□□ 0.17
TOP3A-212ENST00000582122 LMTK3Q96Q04 1460 aa16.13■□□□□ 0.17
TOP3A-212ENST00000582122 HNRNPMP52272 730 aaKnown RBP eCLIP16.12■□□□□ 0.17
TOP3A-212ENST00000582122 SYCP2Q9BX26 1530 aa16.12■□□□□ 0.17
TOP3A-212ENST00000582122 SPAG9O60271 1321 aaKnown RBP16.12■□□□□ 0.17
TOP3A-212ENST00000582122 TRAPPC8Q9Y2L5 1435 aa16.11■□□□□ 0.17
TOP3A-212ENST00000582122 ARHGEF12Q9NZN5 1544 aa16.11■□□□□ 0.17
TOP3A-212ENST00000582122 ATP10AO60312 1499 aa16.1■□□□□ 0.17
TOP3A-212ENST00000582122 CAMSAP2Q08AD1 1489 aa16.1■□□□□ 0.17
TOP3A-212ENST00000582122 MBD5Q9P267 1494 aa16.09■□□□□ 0.17
TOP3A-212ENST00000582122 TSPY4P0CV99 314 aa16.08■□□□□ 0.16
TOP3A-212ENST00000582122 TSPY10P0CW01 314 aa16.08■□□□□ 0.16
TOP3A-212ENST00000582122 ZNF644Q9H582 1327 aaPredicted RBP16.08■□□□□ 0.16
TOP3A-212ENST00000582122 RTEL1-TNFRSF6BF6WH68 1400 aa16.08■□□□□ 0.16
TOP3A-212ENST00000582122 C9orf84Q5VXU9 1444 aa16.08■□□□□ 0.16
TOP3A-212ENST00000582122 CCDC141Q6ZP82 1450 aa16.08■□□□□ 0.16
TOP3A-212ENST00000582122 YEATS2Q9ULM3 1422 aa16.07■□□□□ 0.16
TOP3A-212ENST00000582122 RIMS1Q86UR5 1692 aaKnown RBP16.07■□□□□ 0.16
TOP3A-212ENST00000582122 ARHGEF5Q12774 1597 aa16.06■□□□□ 0.16
TOP3A-212ENST00000582122 REREQ9P2R6 1566 aa16.05■□□□□ 0.16
TOP3A-212ENST00000582122 FGD6Q6ZV73 1430 aa16.05■□□□□ 0.16
TOP3A-212ENST00000582122 ATP7AQ04656 1500 aa16.03■□□□□ 0.16
TOP3A-212ENST00000582122 TCOF1Q13428 1488 aaKnown RBP16.02■□□□□ 0.15
TOP3A-212ENST00000582122 PTPN23Q9H3S7 1636 aa16.01■□□□□ 0.15
TOP3A-212ENST00000582122 DIP2CQ9Y2E4 1556 aa16.01■□□□□ 0.15
TOP3A-212ENST00000582122 KIDINS220Q9ULH0 1771 aa16.01■□□□□ 0.15
TOP3A-212ENST00000582122 INO80Q9ULG1 1556 aaPredicted RBP16■□□□□ 0.15
TOP3A-212ENST00000582122 AGLP35573 1532 aa16■□□□□ 0.15
TOP3A-212ENST00000582122 ABCA6Q8N139 1617 aa15.98■□□□□ 0.15
TOP3A-212ENST00000582122 SHANK2Q9UPX8 1470 aa15.97■□□□□ 0.15
TOP3A-212ENST00000582122 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.97■□□□□ 0.15
TOP3A-212ENST00000582122 A2MP01023 1474 aa15.97■□□□□ 0.15
TOP3A-212ENST00000582122 MAST1Q9Y2H9 1570 aa15.96■□□□□ 0.15
TOP3A-212ENST00000582122 ADGBQ8N7X0 1667 aa15.96■□□□□ 0.15
TOP3A-212ENST00000582122 HSPA2P54652 639 aa15.96■□□□□ 0.15
TOP3A-212ENST00000582122 PPP6R1Q9UPN7 881 aa15.96■□□□□ 0.15
TOP3A-212ENST00000582122 FAM50AQ14320 339 aaKnown RBP15.95■□□□□ 0.14
TOP3A-212ENST00000582122 DHX29Q7Z478 1369 aaKnown RBP15.95■□□□□ 0.14
TOP3A-212ENST00000582122 FER1L4A9Z1Z3 1794 aa15.95■□□□□ 0.14
TOP3A-212ENST00000582122 ESF1Q9H501 851 aaKnown RBP15.94■□□□□ 0.14
TOP3A-212ENST00000582122 ABCC5O15440 1437 aa15.94■□□□□ 0.14
TOP3A-212ENST00000582122 DAPK1P53355 1430 aa15.94■□□□□ 0.14
TOP3A-212ENST00000582122 PLPPR3Q6T4P5 718 aa15.93■□□□□ 0.14
TOP3A-212ENST00000582122 DNMT1P26358 1616 aaKnown RBP15.93■□□□□ 0.14
TOP3A-212ENST00000582122 CERKQ8TCT0 537 aa15.92■□□□□ 0.14
TOP3A-212ENST00000582122 PLXNC1O60486 1568 aa15.92■□□□□ 0.14
TOP3A-212ENST00000582122 SIGLEC1Q9BZZ2 1709 aa15.91■□□□□ 0.14
TOP3A-212ENST00000582122 ANKRD30AQ9BXX3 1397 aa15.91■□□□□ 0.14
TOP3A-212ENST00000582122 MLECQ14165 292 aa15.91■□□□□ 0.14
TOP3A-212ENST00000582122 CNTLNQ9NXG0 1405 aa15.9■□□□□ 0.14
TOP3A-212ENST00000582122 PPARGC1BQ86YN6 1023 aaKnown RBP15.89■□□□□ 0.13
TOP3A-212ENST00000582122 CROCC2H7BZ55 1655 aa15.89■□□□□ 0.13
TOP3A-212ENST00000582122 PREX1Q8TCU6 1659 aa15.89■□□□□ 0.13
TOP3A-212ENST00000582122 DUOX2Q9NRD8 1548 aa15.88■□□□□ 0.13
TOP3A-212ENST00000582122 RRBP1Q9P2E9 1410 aaKnown RBP15.87■□□□□ 0.13
TOP3A-212ENST00000582122 FAM135AQ9P2D6 1515 aa15.87■□□□□ 0.13
TOP3A-212ENST00000582122 KIF15Q9NS87 1388 aa15.87■□□□□ 0.13
TOP3A-212ENST00000582122 KIF3BO15066 747 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms