RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 RAPGEF2Q9Y4G8 1499 aa7.92□□□□□ -1.14
VAPA-203ENST00000577539 PEG3Q9GZU2 1588 aa7.91□□□□□ -1.14
VAPA-203ENST00000577539 CAMK2BQ13554 666 aa7.91□□□□□ -1.14
VAPA-203ENST00000577539 CENPBP07199 599 aaPredicted RBP7.91□□□□□ -1.14
VAPA-203ENST00000577539 YTHDC1Q96MU7 727 aaKnown RBP7.91□□□□□ -1.14
VAPA-203ENST00000577539 ZNF316A6NFI3 1004 aaPredicted RBP7.9□□□□□ -1.14
VAPA-203ENST00000577539 ILDR1Q86SU0 546 aaPredicted RBP7.9□□□□□ -1.14
VAPA-203ENST00000577539 VPS8Q8N3P4 1428 aa7.89□□□□□ -1.15
VAPA-203ENST00000577539 CRISPLD2Q9H0B8 497 aa7.89□□□□□ -1.15
VAPA-203ENST00000577539 RYDENQ9NUL5 291 aaKnown RBP7.89□□□□□ -1.15
VAPA-203ENST00000577539 NEUROD1Q13562 356 aa7.89□□□□□ -1.15
VAPA-203ENST00000577539 ITGAEP38570 1179 aa7.89□□□□□ -1.15
VAPA-203ENST00000577539 IFNL1Q8IU54 200 aa7.89□□□□□ -1.15
VAPA-203ENST00000577539 GPR37O15354 613 aa7.88□□□□□ -1.15
VAPA-203ENST00000577539 ACIN1Q9UKV3 1341 aaKnown RBP7.88□□□□□ -1.15
VAPA-203ENST00000577539 PDAP1Q13442 181 aaKnown RBP7.87□□□□□ -1.15
VAPA-203ENST00000577539 ZNF579Q8NAF0 562 aaKnown RBP7.86□□□□□ -1.15
VAPA-203ENST00000577539 ATP1B4Q9UN42 357 aaPredicted RBP7.86□□□□□ -1.15
VAPA-203ENST00000577539 CHADLQ6NUI6 762 aa7.86□□□□□ -1.15
VAPA-203ENST00000577539 PODXL2Q9NZ53 605 aa7.86□□□□□ -1.15
VAPA-203ENST00000577539 CLEC11AQ9Y240 323 aa7.86□□□□□ -1.15
VAPA-203ENST00000577539 KIF21BO75037 1637 aa7.85□□□□□ -1.15
VAPA-203ENST00000577539 EFCAB3Q8N7B9 438 aa7.85□□□□□ -1.15
VAPA-203ENST00000577539 PHF8Q9UPP1 1060 aa7.85□□□□□ -1.15
VAPA-203ENST00000577539 E2F4Q16254 413 aa7.84□□□□□ -1.15
VAPA-203ENST00000577539 KANK4Q5T7N3 995 aaPredicted RBP7.84□□□□□ -1.15
VAPA-203ENST00000577539 KIF27Q86VH2 1401 aa7.83□□□□□ -1.16
VAPA-203ENST00000577539 FARP1Q9Y4F1 1045 aaPredicted RBP7.83□□□□□ -1.16
VAPA-203ENST00000577539 PSEN1P49768 467 aa7.83□□□□□ -1.16
VAPA-203ENST00000577539 BARGINQ6ZT62 677 aa7.83□□□□□ -1.16
VAPA-203ENST00000577539 ZNF467Q7Z7K2 595 aaPredicted RBP7.83□□□□□ -1.16
VAPA-203ENST00000577539 C1orf115Q9H7X2 142 aa7.82□□□□□ -1.16
VAPA-203ENST00000577539 NCAPD3P42695 1498 aa7.82□□□□□ -1.16
VAPA-203ENST00000577539 ERICH6Q7L0X2 663 aa7.82□□□□□ -1.16
VAPA-203ENST00000577539 TOP2BQ02880 1626 aa7.81□□□□□ -1.16
VAPA-203ENST00000577539 C14orf37Q86TY3 774 aa7.81□□□□□ -1.16
VAPA-203ENST00000577539 MLLT3P42568 568 aaPredicted RBP7.81□□□□□ -1.16
VAPA-203ENST00000577539 KIF12Q96FN5 646 aa7.81□□□□□ -1.16
VAPA-203ENST00000577539 GPBP1L1Q9HC44 474 aaPredicted RBP7.8□□□□□ -1.16
VAPA-203ENST00000577539 CUX1P39880 1505 aa7.79□□□□□ -1.16
VAPA-203ENST00000577539 MAP3K13O43283 966 aa7.79□□□□□ -1.16
VAPA-203ENST00000577539 PRXQ9BXM0 1461 aa7.78□□□□□ -1.16
VAPA-203ENST00000577539 TSPYL2Q9H2G4 693 aaPredicted RBP7.78□□□□□ -1.16
VAPA-203ENST00000577539 FXR2P51116 673 aaKnown RBP eCLIP7.78□□□□□ -1.16
VAPA-203ENST00000577539 CUX2O14529 1486 aa7.78□□□□□ -1.16
VAPA-203ENST00000577539 RBM42Q9BTD8 480 aaKnown RBP7.76□□□□□ -1.17
VAPA-203ENST00000577539 FAM50AQ14320 339 aaKnown RBP7.76□□□□□ -1.17
VAPA-203ENST00000577539 RBM26Q5T8P6 1007 aaKnown RBP7.76□□□□□ -1.17
VAPA-203ENST00000577539 PELP1Q8IZL8 1130 aaKnown RBP7.76□□□□□ -1.17
VAPA-203ENST00000577539 CFTRP13569 1480 aa7.76□□□□□ -1.17
VAPA-203ENST00000577539 ARAP1Q96P48 1450 aa7.76□□□□□ -1.17
VAPA-203ENST00000577539 HMGXB3Q12766 1538 aa7.76□□□□□ -1.17
VAPA-203ENST00000577539 TRPC6Q9Y210 931 aa7.76□□□□□ -1.17
VAPA-203ENST00000577539 CACNB1Q02641 598 aaPredicted RBP7.75□□□□□ -1.17
VAPA-203ENST00000577539 ONECUT3O60422 494 aaPredicted RBP7.75□□□□□ -1.17
VAPA-203ENST00000577539 EMILIN3Q9NT22 766 aa7.75□□□□□ -1.17
VAPA-203ENST00000577539 SOX12O15370 315 aa7.74□□□□□ -1.17
VAPA-203ENST00000577539 NEUROD2Q15784 382 aa7.74□□□□□ -1.17
VAPA-203ENST00000577539 ERICH3Q5RHP9 1530 aa7.74□□□□□ -1.17
VAPA-203ENST00000577539 CADPSQ9ULU8 1353 aa7.74□□□□□ -1.17
VAPA-203ENST00000577539 CARMIL1Q5VZK9 1371 aa7.74□□□□□ -1.17
VAPA-203ENST00000577539 BIVM-ERCC5R4GMW8 1640 aa7.74□□□□□ -1.17
VAPA-203ENST00000577539 PLEKHG3A1L390 1219 aa7.73□□□□□ -1.17
VAPA-203ENST00000577539 IGF1RP08069 1367 aa7.73□□□□□ -1.17
VAPA-203ENST00000577539 DHX57Q6P158 1386 aaKnown RBP7.73□□□□□ -1.17
VAPA-203ENST00000577539 CCNB3Q8WWL7 1395 aa7.73□□□□□ -1.17
VAPA-203ENST00000577539 CABP2Q9NPB3 220 aa7.72□□□□□ -1.17
VAPA-203ENST00000577539 ARHGAP35Q9NRY4 1499 aa7.71□□□□□ -1.17
VAPA-203ENST00000577539 WDR70Q9NW82 654 aa7.71□□□□□ -1.18
VAPA-203ENST00000577539 FGD5Q6ZNL6 1462 aa7.7□□□□□ -1.18
VAPA-203ENST00000577539 LARP6Q9BRS8 491 aaKnown RBP7.69□□□□□ -1.18
VAPA-203ENST00000577539 CLSPNQ9HAW4 1339 aa7.69□□□□□ -1.18
VAPA-203ENST00000577539 NLRP6P59044 892 aa7.69□□□□□ -1.18
VAPA-203ENST00000577539 KDM4CQ9H3R0 1056 aa7.69□□□□□ -1.18
VAPA-203ENST00000577539 TRIM66O15016 1216 aa7.69□□□□□ -1.18
VAPA-203ENST00000577539 PRIM1P49642 420 aaKnown RBP7.67□□□□□ -1.18
VAPA-203ENST00000577539 NPM2Q86SE8 214 aaKnown RBP7.67□□□□□ -1.18
VAPA-203ENST00000577539 RRBP1Q9P2E9 1410 aaKnown RBP7.66□□□□□ -1.18
VAPA-203ENST00000577539 DDX27Q96GQ7 796 aaKnown RBP7.66□□□□□ -1.18
VAPA-203ENST00000577539 FANCD2Q9BXW9 1451 aa7.66□□□□□ -1.18
VAPA-203ENST00000577539 RAB3GAP2Q9H2M9 1393 aa7.66□□□□□ -1.18
VAPA-203ENST00000577539 RAD54L2Q9Y4B4 1467 aa7.65□□□□□ -1.18
VAPA-203ENST00000577539 MKRN3Q13064 507 aaKnown RBP7.65□□□□□ -1.18
VAPA-203ENST00000577539 SIN3AQ96ST3 1273 aa7.65□□□□□ -1.18
VAPA-203ENST00000577539 KIF3CO14782 793 aa7.65□□□□□ -1.18
VAPA-203ENST00000577539 PDIA6Q15084 440 aa7.65□□□□□ -1.19
VAPA-203ENST00000577539 FAM117AQ9C073 453 aa7.65□□□□□ -1.19
VAPA-203ENST00000577539 FHOD3Q2V2M9 1422 aa7.64□□□□□ -1.19
VAPA-203ENST00000577539 AK7Q96M32 723 aa7.63□□□□□ -1.19
VAPA-203ENST00000577539 FHAD1B1AJZ9 1412 aa7.63□□□□□ -1.19
VAPA-203ENST00000577539 PDE4DQ08499 809 aa7.63□□□□□ -1.19
VAPA-203ENST00000577539 GPHNQ9NQX3 736 aaPredicted RBP7.63□□□□□ -1.19
VAPA-203ENST00000577539 PHLDB1Q86UU1 1377 aa7.63□□□□□ -1.19
VAPA-203ENST00000577539 NESP48681 1621 aa7.63□□□□□ -1.19
VAPA-203ENST00000577539 CC2D2AQ9P2K1 1620 aa7.63□□□□□ -1.19
VAPA-203ENST00000577539 PRKAR2AP13861 404 aaKnown RBP7.62□□□□□ -1.19
VAPA-203ENST00000577539 TDRD9Q8NDG6 1382 aaKnown RBP7.62□□□□□ -1.19
VAPA-203ENST00000577539 HIRIP3Q9BW71 556 aaPredicted RBP7.62□□□□□ -1.19
VAPA-203ENST00000577539 SETD5Q9C0A6 1442 aa7.62□□□□□ -1.19
VAPA-203ENST00000577539 ARID3CA6NKF2 412 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms