RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 TEX14Q8IWB6 1497 aa13.29□□□□□ -0.28
NUP88-211ENST00000575976 EFCAB2Q5VUJ9 269 aa13.28□□□□□ -0.28
NUP88-211ENST00000575976 MYO5CQ9NQX4 1742 aa13.27□□□□□ -0.28
NUP88-211ENST00000575976 CFDP1Q9UEE9 299 aaPredicted RBP13.27□□□□□ -0.29
NUP88-211ENST00000575976 FANCAO15360 1455 aa13.27□□□□□ -0.29
NUP88-211ENST00000575976 ARHGAP5Q13017 1502 aa13.27□□□□□ -0.29
NUP88-211ENST00000575976 CDC42BPAQ5VT25 1732 aa13.26□□□□□ -0.29
NUP88-211ENST00000575976 PREX2Q70Z35 1606 aa13.26□□□□□ -0.29
NUP88-211ENST00000575976 PHLDB1Q86UU1 1377 aa13.26□□□□□ -0.29
NUP88-211ENST00000575976 ARAP3Q8WWN8 1544 aa13.26□□□□□ -0.29
NUP88-211ENST00000575976 CDC42BPBQ9Y5S2 1711 aa13.25□□□□□ -0.29
NUP88-211ENST00000575976 NEO1Q92859 1461 aa13.25□□□□□ -0.29
NUP88-211ENST00000575976 AKNAQ7Z591 1439 aa13.25□□□□□ -0.29
NUP88-211ENST00000575976 ZNF777Q9ULD5 760 aaPredicted RBP13.25□□□□□ -0.29
NUP88-211ENST00000575976 LMTK3Q96Q04 1460 aa13.24□□□□□ -0.29
NUP88-211ENST00000575976 MYOM3Q5VTT5 1437 aa13.23□□□□□ -0.29
NUP88-211ENST00000575976 ZNF644Q9H582 1327 aaPredicted RBP13.23□□□□□ -0.29
NUP88-211ENST00000575976 COL17A1Q9UMD9 1497 aaPredicted RBP13.23□□□□□ -0.29
NUP88-211ENST00000575976 ITSN2Q9NZM3 1697 aa13.21□□□□□ -0.29
NUP88-211ENST00000575976 CFAP74Q9C0B2 1584 aa13.21□□□□□ -0.29
NUP88-211ENST00000575976 MIA2Q96PC5 1412 aa13.21□□□□□ -0.3
NUP88-211ENST00000575976 SCAPERQ9BY12 1400 aa13.21□□□□□ -0.3
NUP88-211ENST00000575976 SAMD9LQ8IVG5 1584 aa13.2□□□□□ -0.3
NUP88-211ENST00000575976 RAPGEF3O95398 923 aa13.19□□□□□ -0.3
NUP88-211ENST00000575976 HNRNPMP52272 730 aaKnown RBP eCLIP13.19□□□□□ -0.3
NUP88-211ENST00000575976 ARHGEF12Q9NZN5 1544 aa13.18□□□□□ -0.3
NUP88-211ENST00000575976 DENND4BO75064 1496 aaPredicted RBP13.18□□□□□ -0.3
NUP88-211ENST00000575976 FGD6Q6ZV73 1430 aa13.18□□□□□ -0.3
NUP88-211ENST00000575976 KIAA1107Q9UPP5 1409 aa13.17□□□□□ -0.3
NUP88-211ENST00000575976 ABCC1P33527 1531 aa13.17□□□□□ -0.3
NUP88-211ENST00000575976 CAMSAP2Q08AD1 1489 aa13.16□□□□□ -0.3
NUP88-211ENST00000575976 PLEKHH2Q8IVE3 1493 aa13.16□□□□□ -0.3
NUP88-211ENST00000575976 TRAPPC8Q9Y2L5 1435 aa13.16□□□□□ -0.3
NUP88-211ENST00000575976 POTEDQ86YR6 584 aa13.16□□□□□ -0.3
NUP88-211ENST00000575976 AFAP1Q8N556 730 aa13.16□□□□□ -0.3
NUP88-211ENST00000575976 SYCP2Q9BX26 1530 aa13.15□□□□□ -0.3
NUP88-211ENST00000575976 SOCS7O14512 581 aa13.15□□□□□ -0.3
NUP88-211ENST00000575976 PTPN23Q9H3S7 1636 aa13.14□□□□□ -0.31
NUP88-211ENST00000575976 FAM50AQ14320 339 aaKnown RBP13.14□□□□□ -0.31
NUP88-211ENST00000575976 TCOF1Q13428 1488 aaKnown RBP13.14□□□□□ -0.31
NUP88-211ENST00000575976 MBD5Q9P267 1494 aa13.14□□□□□ -0.31
NUP88-211ENST00000575976 POGZQ7Z3K3 1410 aa13.13□□□□□ -0.31
NUP88-211ENST00000575976 FRMPD1Q5SYB0 1578 aa13.12□□□□□ -0.31
NUP88-211ENST00000575976 RSPH4AQ5TD94 716 aa13.12□□□□□ -0.31
NUP88-211ENST00000575976 RICTORQ6R327 1708 aa13.11□□□□□ -0.31
NUP88-211ENST00000575976 ILDR2Q71H61 639 aa13.11□□□□□ -0.31
NUP88-211ENST00000575976 RRBP1Q9P2E9 1410 aaKnown RBP13.11□□□□□ -0.31
NUP88-211ENST00000575976 ZNF518AQ6AHZ1 1483 aa13.1□□□□□ -0.31
NUP88-211ENST00000575976 MYT1LQ9UL68 1186 aa13.09□□□□□ -0.31
NUP88-211ENST00000575976 CCDC141Q6ZP82 1450 aa13.09□□□□□ -0.31
NUP88-211ENST00000575976 SPAG9O60271 1321 aaKnown RBP13.09□□□□□ -0.31
NUP88-211ENST00000575976 KDM5CP41229 1560 aa13.08□□□□□ -0.32
NUP88-211ENST00000575976 ARHGEF5Q12774 1597 aa13.08□□□□□ -0.32
NUP88-211ENST00000575976 ABCC5O15440 1437 aa13.08□□□□□ -0.32
NUP88-211ENST00000575976 TSPY4P0CV99 314 aa13.08□□□□□ -0.32
NUP88-211ENST00000575976 TSPY10P0CW01 314 aa13.08□□□□□ -0.32
NUP88-211ENST00000575976 ZMYM4Q5VZL5 1548 aa13.08□□□□□ -0.32
NUP88-211ENST00000575976 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.07□□□□□ -0.32
NUP88-211ENST00000575976 DAPK1P53355 1430 aa13.06□□□□□ -0.32
NUP88-211ENST00000575976 YEATS2Q9ULM3 1422 aa13.06□□□□□ -0.32
NUP88-211ENST00000575976 MLH3Q9UHC1 1453 aa13.06□□□□□ -0.32
NUP88-211ENST00000575976 MAGI2Q86UL8 1455 aa13.05□□□□□ -0.32
NUP88-211ENST00000575976 ITGAEP38570 1179 aa13.05□□□□□ -0.32
NUP88-211ENST00000575976 DNMT1P26358 1616 aaKnown RBP13.05□□□□□ -0.32
NUP88-211ENST00000575976 CHIC2Q9UKJ5 165 aa13.04□□□□□ -0.32
NUP88-211ENST00000575976 DISP3Q9P2K9 1392 aa13.04□□□□□ -0.32
NUP88-211ENST00000575976 RTEL1-TNFRSF6BF6WH68 1400 aa13.04□□□□□ -0.32
NUP88-211ENST00000575976 PTPRKQ15262 1439 aa13.04□□□□□ -0.32
NUP88-211ENST00000575976 ZFYVE16Q7Z3T8 1539 aa13.03□□□□□ -0.32
NUP88-211ENST00000575976 KIDINS220Q9ULH0 1771 aa13.03□□□□□ -0.32
NUP88-211ENST00000575976 C9orf84Q5VXU9 1444 aa13.03□□□□□ -0.32
NUP88-211ENST00000575976 ATP7AQ04656 1500 aa13.03□□□□□ -0.32
NUP88-211ENST00000575976 INO80Q9ULG1 1556 aaPredicted RBP13.02□□□□□ -0.33
NUP88-211ENST00000575976 MAST1Q9Y2H9 1570 aa13.02□□□□□ -0.33
NUP88-211ENST00000575976 SHANK2Q9UPX8 1470 aa13.01□□□□□ -0.33
NUP88-211ENST00000575976 CROCC2H7BZ55 1655 aa13□□□□□ -0.33
NUP88-211ENST00000575976 ARHGEF40Q8TER5 1519 aa13□□□□□ -0.33
NUP88-211ENST00000575976 ATP10AO60312 1499 aa13□□□□□ -0.33
NUP88-211ENST00000575976 ABCA6Q8N139 1617 aa12.99□□□□□ -0.33
NUP88-211ENST00000575976 DIP2CQ9Y2E4 1556 aa12.99□□□□□ -0.33
NUP88-211ENST00000575976 RRP7BPQ9NSQ0 103 aa12.99□□□□□ -0.33
NUP88-211ENST00000575976 ANKRD30AQ9BXX3 1397 aa12.97□□□□□ -0.33
NUP88-211ENST00000575976 ADGRL2O95490 1459 aa12.97□□□□□ -0.33
NUP88-211ENST00000575976 A2MP01023 1474 aa12.97□□□□□ -0.33
NUP88-211ENST00000575976 NCOA1Q15788 1441 aa12.96□□□□□ -0.33
NUP88-211ENST00000575976 DHX29Q7Z478 1369 aaKnown RBP12.95□□□□□ -0.34
NUP88-211ENST00000575976 KIF15Q9NS87 1388 aa12.95□□□□□ -0.34
NUP88-211ENST00000575976 ARID4BQ4LE39 1312 aaPredicted RBP12.95□□□□□ -0.34
NUP88-211ENST00000575976 PTPRMP28827 1452 aa12.95□□□□□ -0.34
NUP88-211ENST00000575976 ROCK1Q13464 1354 aa12.94□□□□□ -0.34
NUP88-211ENST00000575976 PLXNC1O60486 1568 aa12.94□□□□□ -0.34
NUP88-211ENST00000575976 REREQ9P2R6 1566 aa12.94□□□□□ -0.34
NUP88-211ENST00000575976 SIGLEC1Q9BZZ2 1709 aa12.93□□□□□ -0.34
NUP88-211ENST00000575976 ADGBQ8N7X0 1667 aa12.93□□□□□ -0.34
NUP88-211ENST00000575976 TRIM26Q12899 539 aaPredicted RBP12.92□□□□□ -0.34
NUP88-211ENST00000575976 MLECQ14165 292 aa12.92□□□□□ -0.34
NUP88-211ENST00000575976 ADAMTSL3P82987 1691 aa12.92□□□□□ -0.34
NUP88-211ENST00000575976 DUOX2Q9NRD8 1548 aa12.92□□□□□ -0.34
NUP88-211ENST00000575976 KIF3BO15066 747 aa12.91□□□□□ -0.34
NUP88-211ENST00000575976 CERKQ8TCT0 537 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms