RNA–Protein interactions for RNA: ENST00000575709.5

USP6-206, Transcript of ubiquitin specific peptidase 6, humanhuman

TSL 2

Gene USP6, Length 8,185 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6-206ENST00000575709 H0YHG0 523 aa13.24□□□□□ -0.29
USP6-206ENST00000575709 NPHP1O15259 732 aa13.23□□□□□ -0.29
USP6-206ENST00000575709 HMMRO75330 724 aa13.23□□□□□ -0.29
USP6-206ENST00000575709 PES1O00541 588 aaKnown RBP13.22□□□□□ -0.29
USP6-206ENST00000575709 CWC15Q9P013 229 aaKnown RBP13.21□□□□□ -0.29
USP6-206ENST00000575709 SENP3Q9H4L4 574 aaPredicted RBP13.21□□□□□ -0.3
USP6-206ENST00000575709 CHMP4BQ9H444 224 aaKnown RBP13.2□□□□□ -0.3
USP6-206ENST00000575709 BCL11BQ9C0K0 894 aaPredicted RBP13.2□□□□□ -0.3
USP6-206ENST00000575709 FOXD4L1Q9NU39 408 aa13.2□□□□□ -0.3
USP6-206ENST00000575709 KIAA1211Q6ZU35 1233 aa13.19□□□□□ -0.3
USP6-206ENST00000575709 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.19□□□□□ -0.3
USP6-206ENST00000575709 NEFHP12036 1026 aa13.19□□□□□ -0.3
USP6-206ENST00000575709 CSPP1Q1MSJ5 1256 aa13.19□□□□□ -0.3
USP6-206ENST00000575709 IPO9Q96P70 1041 aaKnown RBP13.19□□□□□ -0.3
USP6-206ENST00000575709 AK7Q96M32 723 aa13.18□□□□□ -0.3
USP6-206ENST00000575709 CCDC66A2RUB6 948 aa13.18□□□□□ -0.3
USP6-206ENST00000575709 TSR1Q2NL82 804 aaKnown RBP13.18□□□□□ -0.3
USP6-206ENST00000575709 CFAP53Q96M91 514 aa13.18□□□□□ -0.3
USP6-206ENST00000575709 RUFY1Q96T51 708 aa13.18□□□□□ -0.3
USP6-206ENST00000575709 EIF4G2P78344 907 aaKnown RBP eCLIP13.18□□□□□ -0.3
USP6-206ENST00000575709 WWC1Q8IX03 1113 aa13.17□□□□□ -0.3
USP6-206ENST00000575709 FBLN2P98095 1184 aa13.17□□□□□ -0.3
USP6-206ENST00000575709 GSE1Q14687 1217 aa13.16□□□□□ -0.3
USP6-206ENST00000575709 CFAP44Q96MT7 982 aa13.16□□□□□ -0.3
USP6-206ENST00000575709 RASSF8Q8NHQ8 419 aa13.16□□□□□ -0.3
USP6-206ENST00000575709 DYDC1Q8WWB3 177 aa13.16□□□□□ -0.3
USP6-206ENST00000575709 FOXD4L5Q5VV16 416 aaPredicted RBP13.16□□□□□ -0.3
USP6-206ENST00000575709 FOXD4L4Q8WXT5 416 aaPredicted RBP13.16□□□□□ -0.3
USP6-206ENST00000575709 CCDC34Q96HJ3 373 aa13.16□□□□□ -0.3
USP6-206ENST00000575709 MS4A1P11836 297 aa13.15□□□□□ -0.3
USP6-206ENST00000575709 TPD52L1Q16890 204 aaPredicted RBP13.15□□□□□ -0.3
USP6-206ENST00000575709 MAPK8IP3Q9UPT6 1336 aa13.15□□□□□ -0.3
USP6-206ENST00000575709 GOLGA6L19H0YKK7 550 aa13.14□□□□□ -0.31
USP6-206ENST00000575709 APBB1O00213 710 aa13.14□□□□□ -0.31
USP6-206ENST00000575709 DHX37Q8IY37 1157 aaKnown RBP13.14□□□□□ -0.31
USP6-206ENST00000575709 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.14□□□□□ -0.31
USP6-206ENST00000575709 ZNF526Q8TF50 670 aaPredicted RBP13.13□□□□□ -0.31
USP6-206ENST00000575709 DDX11L8A8MPP1 907 aa13.12□□□□□ -0.31
USP6-206ENST00000575709 MFAP1P55081 439 aaKnown RBP13.12□□□□□ -0.31
USP6-206ENST00000575709 HAP1P54257 671 aaPredicted RBP13.12□□□□□ -0.31
USP6-206ENST00000575709 NOL8Q76FK4 1167 aaKnown RBP13.12□□□□□ -0.31
USP6-206ENST00000575709 HOMER1Q86YM7 354 aa13.12□□□□□ -0.31
USP6-206ENST00000575709 KNSTRNQ9Y448 316 aa13.12□□□□□ -0.31
USP6-206ENST00000575709 DCTN1Q14203 1278 aa13.11□□□□□ -0.31
USP6-206ENST00000575709 HSP90B2PQ58FF3 399 aa13.1□□□□□ -0.31
USP6-206ENST00000575709 CHIC2Q9UKJ5 165 aa13.1□□□□□ -0.31
USP6-206ENST00000575709 SKIDA1Q1XH10 827 aa13.1□□□□□ -0.31
USP6-206ENST00000575709 FAM43AQ8N2R8 423 aa13.1□□□□□ -0.31
USP6-206ENST00000575709 TSHZ2Q9NRE2 1034 aa13.1□□□□□ -0.31
USP6-206ENST00000575709 TPM1P09493 284 aa13.09□□□□□ -0.31
USP6-206ENST00000575709 CDR1P51861 262 aa13.09□□□□□ -0.31
USP6-206ENST00000575709 ARGLU1Q9NWB6 273 aaPredicted RBP13.09□□□□□ -0.31
USP6-206ENST00000575709 AEBP1Q8IUX7 1158 aa13.09□□□□□ -0.31
USP6-206ENST00000575709 ACBD3Q9H3P7 528 aa13.09□□□□□ -0.31
USP6-206ENST00000575709 RBM25P49756 843 aaKnown RBP13.07□□□□□ -0.32
USP6-206ENST00000575709 TSPYL1Q9H0U9 437 aa13.07□□□□□ -0.32
USP6-206ENST00000575709 LEKR1Q6ZMV7 388 aa13.07□□□□□ -0.32
USP6-206ENST00000575709 BECN2A8MW95 431 aa13.06□□□□□ -0.32
USP6-206ENST00000575709 MTERF4Q7Z6M4 381 aaKnown RBP13.06□□□□□ -0.32
USP6-206ENST00000575709 KIF16BQ96L93 1317 aa13.06□□□□□ -0.32
USP6-206ENST00000575709 FOXD4L6Q3SYB3 417 aaPredicted RBP13.06□□□□□ -0.32
USP6-206ENST00000575709 FOXD4L3Q6VB84 417 aaPredicted RBP13.06□□□□□ -0.32
USP6-206ENST00000575709 TPM2P07951 284 aa13.06□□□□□ -0.32
USP6-206ENST00000575709 TAF3Q5VWG9 929 aa13.05□□□□□ -0.32
USP6-206ENST00000575709 R3HCC1Q9Y3T6 440 aaKnown RBP13.05□□□□□ -0.32
USP6-206ENST00000575709 DDX49Q9Y6V7 483 aaKnown RBP13.05□□□□□ -0.32
USP6-206ENST00000575709 SF3A1Q15459 793 aaKnown RBP13.05□□□□□ -0.32
USP6-206ENST00000575709 KIF3AQ9Y496 699 aa13.05□□□□□ -0.32
USP6-206ENST00000575709 TCERG1O14776 1098 aaKnown RBP13.04□□□□□ -0.32
USP6-206ENST00000575709 PCMTD1Q96MG8 357 aaPredicted RBP13.04□□□□□ -0.32
USP6-206ENST00000575709 RBM10P98175 930 aaKnown RBP13.03□□□□□ -0.32
USP6-206ENST00000575709 MNS1Q8NEH6 495 aa13.03□□□□□ -0.32
USP6-206ENST00000575709 DEF6Q9H4E7 631 aa13.03□□□□□ -0.32
USP6-206ENST00000575709 NEXNQ0ZGT2 675 aa13.03□□□□□ -0.32
USP6-206ENST00000575709 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP6-206ENST00000575709 CC2D1BQ5T0F9 858 aaKnown RBP13.03□□□□□ -0.32
USP6-206ENST00000575709 BCCIPQ9P287 314 aaKnown RBP eCLIP13.02□□□□□ -0.33
USP6-206ENST00000575709 IFT57Q9NWB7 429 aa13.01□□□□□ -0.33
USP6-206ENST00000575709 GIMAP7Q8NHV1 300 aa13.01□□□□□ -0.33
USP6-206ENST00000575709 TRIM6-TRIM34B2RNG4 842 aa13.01□□□□□ -0.33
USP6-206ENST00000575709 VPS53Q5VIR6 699 aa13.01□□□□□ -0.33
USP6-206ENST00000575709 U2SURPO15042 1029 aaKnown RBP13.01□□□□□ -0.33
USP6-206ENST00000575709 IPO7O95373 1038 aaKnown RBP13.01□□□□□ -0.33
USP6-206ENST00000575709 SKOR2Q2VWA4 1001 aaPredicted RBP13□□□□□ -0.33
USP6-206ENST00000575709 KRI1Q8N9T8 703 aaKnown RBP13□□□□□ -0.33
USP6-206ENST00000575709 NUDCQ9Y266 331 aa13□□□□□ -0.33
USP6-206ENST00000575709 INCENPQ9NQS7 918 aa13□□□□□ -0.33
USP6-206ENST00000575709 ZRSR2Q15696 482 aaKnown RBP12.99□□□□□ -0.33
USP6-206ENST00000575709 H3BQV1 296 aa12.99□□□□□ -0.33
USP6-206ENST00000575709 NAP1L1P55209 391 aaKnown RBP12.99□□□□□ -0.33
USP6-206ENST00000575709 IFFO2Q5TF58 517 aa12.99□□□□□ -0.33
USP6-206ENST00000575709 GPATCH11Q8N954 259 aa12.99□□□□□ -0.33
USP6-206ENST00000575709 CLASRPQ8N2M8 674 aaKnown RBP12.99□□□□□ -0.33
USP6-206ENST00000575709 DCAF1Q9Y4B6 1507 aa12.99□□□□□ -0.33
USP6-206ENST00000575709 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.98□□□□□ -0.33
USP6-206ENST00000575709 RSPH4AQ5TD94 716 aa12.98□□□□□ -0.33
USP6-206ENST00000575709 ST18O60284 1047 aa12.98□□□□□ -0.33
USP6-206ENST00000575709 KIAA0754O94854 1291 aa12.98□□□□□ -0.33
USP6-206ENST00000575709 SLC4A3P48751 1232 aa12.98□□□□□ -0.33
USP6-206ENST00000575709 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms