RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 GPATCH8Q9UKJ3 1502 aaKnown RBP21.44■■□□□ 1.02
CIITA-210ENST00000575513 CCNB3Q8WWL7 1395 aa21.43■■□□□ 1.02
CIITA-210ENST00000575513 FRMPD1Q5SYB0 1578 aa21.43■■□□□ 1.02
CIITA-210ENST00000575513 POGZQ7Z3K3 1410 aa21.42■■□□□ 1.02
CIITA-210ENST00000575513 MAGI2Q86UL8 1455 aa21.42■■□□□ 1.02
CIITA-210ENST00000575513 PREX2Q70Z35 1606 aa21.41■■□□□ 1.02
CIITA-210ENST00000575513 TIAM1Q13009 1591 aa21.41■■□□□ 1.02
CIITA-210ENST00000575513 KDM4FA0A1W2PPD8 638 aa21.41■■□□□ 1.02
CIITA-210ENST00000575513 AEBP2Q6ZN18 517 aaPredicted RBP21.41■■□□□ 1.02
CIITA-210ENST00000575513 CFDP1Q9UEE9 299 aaPredicted RBP21.4■■□□□ 1.02
CIITA-210ENST00000575513 RICTORQ6R327 1708 aa21.4■■□□□ 1.02
CIITA-210ENST00000575513 CDC42BPBQ9Y5S2 1711 aa21.4■■□□□ 1.02
CIITA-210ENST00000575513 ZMYM4Q5VZL5 1548 aa21.39■■□□□ 1.02
CIITA-210ENST00000575513 ZNF518AQ6AHZ1 1483 aa21.38■■□□□ 1.01
CIITA-210ENST00000575513 LRRC9Q6ZRR7 1453 aa21.38■■□□□ 1.01
CIITA-210ENST00000575513 APLP2Q06481 763 aa21.37■■□□□ 1.01
CIITA-210ENST00000575513 CDC42BPAQ5VT25 1732 aa21.37■■□□□ 1.01
CIITA-210ENST00000575513 AFAP1Q8N556 730 aa21.35■■□□□ 1.01
CIITA-210ENST00000575513 KIAA1107Q9UPP5 1409 aa21.35■■□□□ 1.01
CIITA-210ENST00000575513 ZNF777Q9ULD5 760 aaPredicted RBP21.34■■□□□ 1.01
CIITA-210ENST00000575513 NCOA2Q15596 1464 aa21.33■■□□□ 1.01
CIITA-210ENST00000575513 PLEKHH2Q8IVE3 1493 aa21.33■■□□□ 1.01
CIITA-210ENST00000575513 KANK4Q5T7N3 995 aaPredicted RBP21.33■■□□□ 1.01
CIITA-210ENST00000575513 ABCC1P33527 1531 aa21.33■■□□□ 1
CIITA-210ENST00000575513 ARHGEF12Q9NZN5 1544 aa21.31■■□□□ 1
CIITA-210ENST00000575513 KDM5CP41229 1560 aa21.31■■□□□ 1
CIITA-210ENST00000575513 ZFYVE16Q7Z3T8 1539 aa21.3■■□□□ 1
CIITA-210ENST00000575513 ARHGEF40Q8TER5 1519 aa21.3■■□□□ 1
CIITA-210ENST00000575513 SUPT6HQ7KZ85 1726 aaKnown RBP21.3■■□□□ 1
CIITA-210ENST00000575513 YEATS2Q9ULM3 1422 aa21.29■■□□□ 1
CIITA-210ENST00000575513 TRAPPC8Q9Y2L5 1435 aa21.29■■□□□ 1
CIITA-210ENST00000575513 MLH3Q9UHC1 1453 aa21.29■■□□□ 1
CIITA-210ENST00000575513 SAMD9LQ8IVG5 1584 aa21.27■■□□□ 1
CIITA-210ENST00000575513 HNRNPMP52272 730 aaKnown RBP eCLIP21.27■■□□□ 1
CIITA-210ENST00000575513 ATP10AO60312 1499 aa21.26■□□□□ 0.99
CIITA-210ENST00000575513 ITSN2Q9NZM3 1697 aa21.25■□□□□ 0.99
CIITA-210ENST00000575513 RSPH4AQ5TD94 716 aa21.25■□□□□ 0.99
CIITA-210ENST00000575513 ARID4BQ4LE39 1312 aaPredicted RBP21.25■□□□□ 0.99
CIITA-210ENST00000575513 MYT1LQ9UL68 1186 aa21.23■□□□□ 0.99
CIITA-210ENST00000575513 ZNF644Q9H582 1327 aaPredicted RBP21.23■□□□□ 0.99
CIITA-210ENST00000575513 SYCP2Q9BX26 1530 aa21.22■□□□□ 0.99
CIITA-210ENST00000575513 HECW2Q9P2P5 1572 aa21.22■□□□□ 0.99
CIITA-210ENST00000575513 C9orf84Q5VXU9 1444 aa21.21■□□□□ 0.99
CIITA-210ENST00000575513 SPAG9O60271 1321 aaKnown RBP21.21■□□□□ 0.99
CIITA-210ENST00000575513 MBD5Q9P267 1494 aa21.2■□□□□ 0.98
CIITA-210ENST00000575513 MIA2Q96PC5 1412 aa21.2■□□□□ 0.98
CIITA-210ENST00000575513 MYOM3Q5VTT5 1437 aa21.18■□□□□ 0.98
CIITA-210ENST00000575513 REREQ9P2R6 1566 aa21.16■□□□□ 0.98
CIITA-210ENST00000575513 CAMSAP2Q08AD1 1489 aa21.15■□□□□ 0.98
CIITA-210ENST00000575513 ADAMTSL3P82987 1691 aa21.15■□□□□ 0.98
CIITA-210ENST00000575513 RTEL1-TNFRSF6BF6WH68 1400 aa21.14■□□□□ 0.98
CIITA-210ENST00000575513 BCORL1Q5H9F3 1711 aa21.14■□□□□ 0.97
CIITA-210ENST00000575513 DIP2CQ9Y2E4 1556 aa21.14■□□□□ 0.97
CIITA-210ENST00000575513 KIDINS220Q9ULH0 1771 aa21.13■□□□□ 0.97
CIITA-210ENST00000575513 AGLP35573 1532 aa21.11■□□□□ 0.97
CIITA-210ENST00000575513 CCDC141Q6ZP82 1450 aa21.11■□□□□ 0.97
CIITA-210ENST00000575513 ATP7AQ04656 1500 aa21.1■□□□□ 0.97
CIITA-210ENST00000575513 TSPY4P0CV99 314 aa21.1■□□□□ 0.97
CIITA-210ENST00000575513 TSPY10P0CW01 314 aa21.1■□□□□ 0.97
CIITA-210ENST00000575513 ABCA6Q8N139 1617 aa21.1■□□□□ 0.97
CIITA-210ENST00000575513 ARHGEF5Q12774 1597 aa21.09■□□□□ 0.97
CIITA-210ENST00000575513 SIGLEC1Q9BZZ2 1709 aa21.08■□□□□ 0.97
CIITA-210ENST00000575513 INO80Q9ULG1 1556 aaPredicted RBP21.08■□□□□ 0.97
CIITA-210ENST00000575513 PTPRMP28827 1452 aa21.07■□□□□ 0.96
CIITA-210ENST00000575513 MLECQ14165 292 aa21.07■□□□□ 0.96
CIITA-210ENST00000575513 FGD6Q6ZV73 1430 aa21.04■□□□□ 0.96
CIITA-210ENST00000575513 A2MP01023 1474 aa21.03■□□□□ 0.96
CIITA-210ENST00000575513 MADDQ8WXG6 1647 aa21.03■□□□□ 0.96
CIITA-210ENST00000575513 DHX29Q7Z478 1369 aaKnown RBP21.01■□□□□ 0.95
CIITA-210ENST00000575513 TCOF1Q13428 1488 aaKnown RBP21.01■□□□□ 0.95
CIITA-210ENST00000575513 PPP6R1Q9UPN7 881 aa21■□□□□ 0.95
CIITA-210ENST00000575513 PLXNC1O60486 1568 aa20.99■□□□□ 0.95
CIITA-210ENST00000575513 PTPN23Q9H3S7 1636 aa20.98■□□□□ 0.95
CIITA-210ENST00000575513 ADGBQ8N7X0 1667 aa20.97■□□□□ 0.95
CIITA-210ENST00000575513 ESF1Q9H501 851 aaKnown RBP20.97■□□□□ 0.95
CIITA-210ENST00000575513 MAST1Q9Y2H9 1570 aa20.97■□□□□ 0.95
CIITA-210ENST00000575513 ABCC5O15440 1437 aa20.95■□□□□ 0.94
CIITA-210ENST00000575513 CNTLNQ9NXG0 1405 aa20.95■□□□□ 0.94
CIITA-210ENST00000575513 RIMS1Q86UR5 1692 aaKnown RBP20.94■□□□□ 0.94
CIITA-210ENST00000575513 SHANK2Q9UPX8 1470 aa20.94■□□□□ 0.94
CIITA-210ENST00000575513 FER1L4A9Z1Z3 1794 aa20.92■□□□□ 0.94
CIITA-210ENST00000575513 DAPK1P53355 1430 aa20.92■□□□□ 0.94
CIITA-210ENST00000575513 GGT6Q6P531 493 aa20.9■□□□□ 0.94
CIITA-210ENST00000575513 KIF3BO15066 747 aa20.89■□□□□ 0.93
CIITA-210ENST00000575513 FAM50AQ14320 339 aaKnown RBP20.89■□□□□ 0.93
CIITA-210ENST00000575513 DNMT1P26358 1616 aaKnown RBP20.88■□□□□ 0.93
CIITA-210ENST00000575513 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.86■□□□□ 0.93
CIITA-210ENST00000575513 CEBPAP49715 358 aaPredicted RBP20.86■□□□□ 0.93
CIITA-210ENST00000575513 PPARGC1BQ86YN6 1023 aaKnown RBP20.85■□□□□ 0.93
CIITA-210ENST00000575513 ZMYM3Q14202 1370 aa20.85■□□□□ 0.93
CIITA-210ENST00000575513 ANKRD30AQ9BXX3 1397 aa20.85■□□□□ 0.93
CIITA-210ENST00000575513 KIF15Q9NS87 1388 aa20.84■□□□□ 0.93
CIITA-210ENST00000575513 DUOX2Q9NRD8 1548 aa20.83■□□□□ 0.93
CIITA-210ENST00000575513 PLPPR3Q6T4P5 718 aa20.83■□□□□ 0.93
CIITA-210ENST00000575513 RRP7BPQ9NSQ0 103 aa20.83■□□□□ 0.93
CIITA-210ENST00000575513 FAM135AQ9P2D6 1515 aa20.83■□□□□ 0.92
CIITA-210ENST00000575513 NCOA1Q15788 1441 aa20.82■□□□□ 0.92
CIITA-210ENST00000575513 CROCC2H7BZ55 1655 aa20.82■□□□□ 0.92
CIITA-210ENST00000575513 ERBINQ96RT1 1412 aa20.8■□□□□ 0.92
CIITA-210ENST00000575513 CHIC2Q9UKJ5 165 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms