RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 CCDC7Q96M83 1385 aa26.39■■□□□ 1.82
SCARF1-206ENST00000573852 ANKRD30BQ9BXX2 1392 aa26.39■■□□□ 1.82
SCARF1-206ENST00000573852 NBPF8Q3BBV2 869 aa26.39■■□□□ 1.81
SCARF1-206ENST00000573852 DAPK1P53355 1430 aa26.39■■□□□ 1.81
SCARF1-206ENST00000573852 RPRD2Q5VT52 1461 aaKnown RBP26.36■■□□□ 1.81
SCARF1-206ENST00000573852 ROCK1Q13464 1354 aa26.36■■□□□ 1.81
SCARF1-206ENST00000573852 PRKRIP1Q9H875 184 aaPredicted RBP26.36■■□□□ 1.81
SCARF1-206ENST00000573852 ABCC5O15440 1437 aa26.35■■□□□ 1.81
SCARF1-206ENST00000573852 ZNF644Q9H582 1327 aaPredicted RBP26.34■■□□□ 1.81
SCARF1-206ENST00000573852 TEX14Q8IWB6 1497 aa26.33■■□□□ 1.81
SCARF1-206ENST00000573852 DNMT1P26358 1616 aaKnown RBP26.32■■□□□ 1.8
SCARF1-206ENST00000573852 FAM9BQ8IZU0 186 aa26.29■■□□□ 1.8
SCARF1-206ENST00000573852 SLC4A1APQ9BWU0 796 aaKnown RBP26.28■■□□□ 1.8
SCARF1-206ENST00000573852 SPATA31E1Q6ZUB1 1445 aa26.27■■□□□ 1.8
SCARF1-206ENST00000573852 MRS2Q9HD23 443 aa26.27■■□□□ 1.8
SCARF1-206ENST00000573852 DISP1Q96F81 1524 aa26.27■■□□□ 1.8
SCARF1-206ENST00000573852 NUP153P49790 1475 aaKnown RBP26.26■■□□□ 1.79
SCARF1-206ENST00000573852 KIF7Q2M1P5 1343 aa26.26■■□□□ 1.79
SCARF1-206ENST00000573852 KIAA0556O60303 1618 aa26.25■■□□□ 1.79
SCARF1-206ENST00000573852 CDK11AQ9UQ88 783 aaPredicted RBP26.24■■□□□ 1.79
SCARF1-206ENST00000573852 MRC2Q9UBG0 1479 aa26.24■■□□□ 1.79
SCARF1-206ENST00000573852 MSH5O43196 834 aa26.23■■□□□ 1.79
SCARF1-206ENST00000573852 ERICH6BQ5W0A0 696 aa26.23■■□□□ 1.79
SCARF1-206ENST00000573852 ZNF608Q9ULD9 1512 aaPredicted RBP26.22■■□□□ 1.79
SCARF1-206ENST00000573852 KIAA0586Q9BVV6 1533 aa26.21■■□□□ 1.79
SCARF1-206ENST00000573852 POLR1AO95602 1720 aaPredicted RBP26.21■■□□□ 1.79
SCARF1-206ENST00000573852 ZBED9Q6R2W3 1325 aa26.2■■□□□ 1.78
SCARF1-206ENST00000573852 RAPGEF6Q8TEU7 1601 aa26.2■■□□□ 1.78
SCARF1-206ENST00000573852 PPP4R2Q9NY27 417 aa26.19■■□□□ 1.78
SCARF1-206ENST00000573852 PZPP20742 1482 aa26.18■■□□□ 1.78
SCARF1-206ENST00000573852 FANCIQ9NVI1 1328 aa26.14■■□□□ 1.77
SCARF1-206ENST00000573852 PRG4Q92954 1404 aaPredicted RBP26.14■■□□□ 1.77
SCARF1-206ENST00000573852 IFT140Q96RY7 1462 aa26.13■■□□□ 1.77
SCARF1-206ENST00000573852 CAMSAP2Q08AD1 1489 aa26.12■■□□□ 1.77
SCARF1-206ENST00000573852 BCL11AQ9H165 835 aa26.11■■□□□ 1.77
SCARF1-206ENST00000573852 CFDP1Q9UEE9 299 aaPredicted RBP26.1■■□□□ 1.77
SCARF1-206ENST00000573852 TROQ12816 1431 aaPredicted RBP26.1■■□□□ 1.77
SCARF1-206ENST00000573852 MBD5Q9P267 1494 aa26.09■■□□□ 1.77
SCARF1-206ENST00000573852 GRIN2AQ12879 1464 aa26.08■■□□□ 1.77
SCARF1-206ENST00000573852 DHX29Q7Z478 1369 aaKnown RBP26.07■■□□□ 1.76
SCARF1-206ENST00000573852 ADGBQ8N7X0 1667 aa26.06■■□□□ 1.76
SCARF1-206ENST00000573852 B4GALNT3Q6L9W6 998 aa26.06■■□□□ 1.76
SCARF1-206ENST00000573852 GPATCH8Q9UKJ3 1502 aaKnown RBP26.06■■□□□ 1.76
SCARF1-206ENST00000573852 KIAA1107Q9UPP5 1409 aa26.06■■□□□ 1.76
SCARF1-206ENST00000573852 BCORL1Q5H9F3 1711 aa26.06■■□□□ 1.76
SCARF1-206ENST00000573852 ZNF777Q9ULD5 760 aaPredicted RBP26.04■■□□□ 1.76
SCARF1-206ENST00000573852 ITSN2Q9NZM3 1697 aa26.04■■□□□ 1.76
SCARF1-206ENST00000573852 USP47Q96K76 1375 aa26.03■■□□□ 1.76
SCARF1-206ENST00000573852 KIF14Q15058 1648 aa26.03■■□□□ 1.76
SCARF1-206ENST00000573852 ZNF326Q5BKZ1 582 aaKnown RBP26.02■■□□□ 1.76
SCARF1-206ENST00000573852 PKD2Q13563 968 aa26.02■■□□□ 1.76
SCARF1-206ENST00000573852 ADGRL2O95490 1459 aa26.02■■□□□ 1.76
SCARF1-206ENST00000573852 PLB1Q6P1J6 1458 aa26.02■■□□□ 1.76
SCARF1-206ENST00000573852 CNGB1Q14028 1251 aaPredicted RBP26.01■■□□□ 1.76
SCARF1-206ENST00000573852 POLR3GLQ9BT43 218 aa26■■□□□ 1.75
SCARF1-206ENST00000573852 CROCC2H7BZ55 1655 aa26■■□□□ 1.75
SCARF1-206ENST00000573852 EIF4G3O43432 1585 aaKnown RBP25.98■■□□□ 1.75
SCARF1-206ENST00000573852 ADCY10Q96PN6 1610 aa25.97■■□□□ 1.75
SCARF1-206ENST00000573852 KDM5CP41229 1560 aa25.96■■□□□ 1.75
SCARF1-206ENST00000573852 ANKRD30AQ9BXX3 1397 aa25.96■■□□□ 1.75
SCARF1-206ENST00000573852 SMG6Q86US8 1419 aaKnown RBP25.95■■□□□ 1.75
SCARF1-206ENST00000573852 ANKRD50Q9ULJ7 1429 aa25.93■■□□□ 1.74
SCARF1-206ENST00000573852 CEP170Q5SW79 1584 aa25.92■■□□□ 1.74
SCARF1-206ENST00000573852 ARID4BQ4LE39 1312 aaPredicted RBP25.91■■□□□ 1.74
SCARF1-206ENST00000573852 NUDCQ9Y266 331 aa25.89■■□□□ 1.74
SCARF1-206ENST00000573852 UHRF1BP1Q6BDS2 1440 aa25.89■■□□□ 1.73
SCARF1-206ENST00000573852 CHMP7Q8WUX9 453 aaPredicted RBP25.88■■□□□ 1.73
SCARF1-206ENST00000573852 ERICH6Q7L0X2 663 aa25.88■■□□□ 1.73
SCARF1-206ENST00000573852 RALGAPBQ86X10 1494 aa25.87■■□□□ 1.73
SCARF1-206ENST00000573852 NUP155O75694 1391 aa25.86■■□□□ 1.73
SCARF1-206ENST00000573852 RNF123Q5XPI4 1314 aa25.85■■□□□ 1.73
SCARF1-206ENST00000573852 MAGI1Q96QZ7 1491 aaPredicted RBP25.85■■□□□ 1.73
SCARF1-206ENST00000573852 PNISRQ8TF01 805 aaKnown RBP25.85■■□□□ 1.73
SCARF1-206ENST00000573852 SENP3-EIF4A1A0A087X0R7 540 aa25.84■■□□□ 1.73
SCARF1-206ENST00000573852 CDC42BPAQ5VT25 1732 aa25.84■■□□□ 1.73
SCARF1-206ENST00000573852 CARD11Q9BXL7 1154 aa25.83■■□□□ 1.73
SCARF1-206ENST00000573852 SYNJ2O15056 1496 aa25.82■■□□□ 1.72
SCARF1-206ENST00000573852 ROCK2O75116 1388 aaKnown RBP25.82■■□□□ 1.72
SCARF1-206ENST00000573852 C9orf84Q5VXU9 1444 aa25.82■■□□□ 1.72
SCARF1-206ENST00000573852 CARMIL2Q6F5E8 1435 aa25.82■■□□□ 1.72
SCARF1-206ENST00000573852 FBLN2P98095 1184 aa25.81■■□□□ 1.72
SCARF1-206ENST00000573852 JPH4Q96JJ6 628 aa25.81■■□□□ 1.72
SCARF1-206ENST00000573852 ABCC10Q5T3U5 1492 aa25.8■■□□□ 1.72
SCARF1-206ENST00000573852 TMC1Q8TDI8 760 aa25.8■■□□□ 1.72
SCARF1-206ENST00000573852 SHANK2Q9UPX8 1470 aa25.79■■□□□ 1.72
SCARF1-206ENST00000573852 ARHGEF12Q9NZN5 1544 aa25.79■■□□□ 1.72
SCARF1-206ENST00000573852 PLEKHD1A6NEE1 506 aa25.79■■□□□ 1.72
SCARF1-206ENST00000573852 KDM2AQ9Y2K7 1162 aa25.78■■□□□ 1.72
SCARF1-206ENST00000573852 ST20-MTHFSA0A0A6YYL1 179 aa25.77■■□□□ 1.72
SCARF1-206ENST00000573852 KIF15Q9NS87 1388 aa25.76■■□□□ 1.71
SCARF1-206ENST00000573852 KDM5DQ9BY66 1539 aa25.76■■□□□ 1.71
SCARF1-206ENST00000573852 ATP10BO94823 1461 aa25.75■■□□□ 1.71
SCARF1-206ENST00000573852 NUP160Q12769 1436 aa25.74■■□□□ 1.71
SCARF1-206ENST00000573852 ABCA8O94911 1581 aa25.74■■□□□ 1.71
SCARF1-206ENST00000573852 TSPY4P0CV99 314 aa25.73■■□□□ 1.71
SCARF1-206ENST00000573852 TSPY10P0CW01 314 aa25.73■■□□□ 1.71
SCARF1-206ENST00000573852 DCAF11Q8TEB1 546 aa25.73■■□□□ 1.71
SCARF1-206ENST00000573852 CCDC136Q96JN2 1154 aa25.73■■□□□ 1.71
SCARF1-206ENST00000573852 LRPPRCP42704 1394 aaKnown RBP25.71■■□□□ 1.71
SCARF1-206ENST00000573852 HNRNPMP52272 730 aaKnown RBP eCLIP25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms