RNA–Protein interactions for RNA: ENST00000571886.1

GTF3C1-213, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 721 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-213ENST00000571886 ARHGAP5Q13017 1502 aa16.34■□□□□ 0.21
GTF3C1-213ENST00000571886 CDC42BPAQ5VT25 1732 aa16.33■□□□□ 0.21
GTF3C1-213ENST00000571886 VPS8Q8N3P4 1428 aa16.33■□□□□ 0.2
GTF3C1-213ENST00000571886 PREX2Q70Z35 1606 aa16.31■□□□□ 0.2
GTF3C1-213ENST00000571886 MTUS2Q5JR59 1369 aa16.31■□□□□ 0.2
GTF3C1-213ENST00000571886 ARHGEF12Q9NZN5 1544 aa16.29■□□□□ 0.2
GTF3C1-213ENST00000571886 GPATCH8Q9UKJ3 1502 aaKnown RBP16.29■□□□□ 0.2
GTF3C1-213ENST00000571886 AFAP1Q8N556 730 aa16.29■□□□□ 0.2
GTF3C1-213ENST00000571886 POGZQ7Z3K3 1410 aa16.28■□□□□ 0.2
GTF3C1-213ENST00000571886 YEATS2Q9ULM3 1422 aa16.28■□□□□ 0.2
GTF3C1-213ENST00000571886 ZMYM4Q5VZL5 1548 aa16.27■□□□□ 0.2
GTF3C1-213ENST00000571886 TIAM1Q13009 1591 aa16.26■□□□□ 0.19
GTF3C1-213ENST00000571886 ZNF777Q9ULD5 760 aaPredicted RBP16.26■□□□□ 0.19
GTF3C1-213ENST00000571886 EHBP1L1Q8N3D4 1523 aa16.25■□□□□ 0.19
GTF3C1-213ENST00000571886 KANK4Q5T7N3 995 aaPredicted RBP16.25■□□□□ 0.19
GTF3C1-213ENST00000571886 TRAPPC8Q9Y2L5 1435 aa16.25■□□□□ 0.19
GTF3C1-213ENST00000571886 SIGLEC1Q9BZZ2 1709 aa16.25■□□□□ 0.19
GTF3C1-213ENST00000571886 CCNB3Q8WWL7 1395 aa16.25■□□□□ 0.19
GTF3C1-213ENST00000571886 ARHGEF40Q8TER5 1519 aa16.24■□□□□ 0.19
GTF3C1-213ENST00000571886 SAMD9LQ8IVG5 1584 aa16.24■□□□□ 0.19
GTF3C1-213ENST00000571886 ABCC1P33527 1531 aa16.24■□□□□ 0.19
GTF3C1-213ENST00000571886 ZFYVE16Q7Z3T8 1539 aa16.23■□□□□ 0.19
GTF3C1-213ENST00000571886 ITSN2Q9NZM3 1697 aa16.22■□□□□ 0.19
GTF3C1-213ENST00000571886 HNRNPMP52272 730 aaKnown RBP eCLIP16.22■□□□□ 0.19
GTF3C1-213ENST00000571886 CFDP1Q9UEE9 299 aaPredicted RBP16.22■□□□□ 0.19
GTF3C1-213ENST00000571886 ZNF644Q9H582 1327 aaPredicted RBP16.21■□□□□ 0.19
GTF3C1-213ENST00000571886 ZNF518AQ6AHZ1 1483 aa16.21■□□□□ 0.19
GTF3C1-213ENST00000571886 MAGI2Q86UL8 1455 aa16.21■□□□□ 0.19
GTF3C1-213ENST00000571886 KDM5CP41229 1560 aa16.21■□□□□ 0.18
GTF3C1-213ENST00000571886 ARID4BQ4LE39 1312 aaPredicted RBP16.2■□□□□ 0.18
GTF3C1-213ENST00000571886 NCOA2Q15596 1464 aa16.2■□□□□ 0.18
GTF3C1-213ENST00000571886 LRRC9Q6ZRR7 1453 aa16.2■□□□□ 0.18
GTF3C1-213ENST00000571886 SUPT6HQ7KZ85 1726 aaKnown RBP16.19■□□□□ 0.18
GTF3C1-213ENST00000571886 ADAMTSL3P82987 1691 aa16.18■□□□□ 0.18
GTF3C1-213ENST00000571886 BCORL1Q5H9F3 1711 aa16.18■□□□□ 0.18
GTF3C1-213ENST00000571886 MAP3K1Q13233 1512 aa16.18■□□□□ 0.18
GTF3C1-213ENST00000571886 SYCP2Q9BX26 1530 aa16.18■□□□□ 0.18
GTF3C1-213ENST00000571886 MYT1LQ9UL68 1186 aa16.17■□□□□ 0.18
GTF3C1-213ENST00000571886 ATP10AO60312 1499 aa16.16■□□□□ 0.18
GTF3C1-213ENST00000571886 HECW2Q9P2P5 1572 aa16.15■□□□□ 0.18
GTF3C1-213ENST00000571886 KIDINS220Q9ULH0 1771 aa16.15■□□□□ 0.18
GTF3C1-213ENST00000571886 MLH3Q9UHC1 1453 aa16.15■□□□□ 0.18
GTF3C1-213ENST00000571886 DIP2CQ9Y2E4 1556 aa16.14■□□□□ 0.17
GTF3C1-213ENST00000571886 KIAA1107Q9UPP5 1409 aa16.14■□□□□ 0.17
GTF3C1-213ENST00000571886 MLECQ14165 292 aa16.14■□□□□ 0.17
GTF3C1-213ENST00000571886 ABCA6Q8N139 1617 aa16.14■□□□□ 0.17
GTF3C1-213ENST00000571886 MADDQ8WXG6 1647 aa16.12■□□□□ 0.17
GTF3C1-213ENST00000571886 C9orf84Q5VXU9 1444 aa16.12■□□□□ 0.17
GTF3C1-213ENST00000571886 MBD5Q9P267 1494 aa16.12■□□□□ 0.17
GTF3C1-213ENST00000571886 PLEKHH2Q8IVE3 1493 aa16.1■□□□□ 0.17
GTF3C1-213ENST00000571886 APLP2Q06481 763 aa16.1■□□□□ 0.17
GTF3C1-213ENST00000571886 SPAG9O60271 1321 aaKnown RBP16.1■□□□□ 0.17
GTF3C1-213ENST00000571886 PTPRMP28827 1452 aa16.1■□□□□ 0.17
GTF3C1-213ENST00000571886 CAMSAP2Q08AD1 1489 aa16.08■□□□□ 0.16
GTF3C1-213ENST00000571886 RIMS1Q86UR5 1692 aaKnown RBP16.08■□□□□ 0.16
GTF3C1-213ENST00000571886 REREQ9P2R6 1566 aa16.05■□□□□ 0.16
GTF3C1-213ENST00000571886 INO80Q9ULG1 1556 aaPredicted RBP16.05■□□□□ 0.16
GTF3C1-213ENST00000571886 ATP7AQ04656 1500 aa16.05■□□□□ 0.16
GTF3C1-213ENST00000571886 PLPPR3Q6T4P5 718 aa16.05■□□□□ 0.16
GTF3C1-213ENST00000571886 MYOM3Q5VTT5 1437 aa16.04■□□□□ 0.16
GTF3C1-213ENST00000571886 FER1L4A9Z1Z3 1794 aa16.03■□□□□ 0.16
GTF3C1-213ENST00000571886 AGLP35573 1532 aa16.02■□□□□ 0.15
GTF3C1-213ENST00000571886 CCDC141Q6ZP82 1450 aa16.01■□□□□ 0.15
GTF3C1-213ENST00000571886 MIA2Q96PC5 1412 aa16.01■□□□□ 0.15
GTF3C1-213ENST00000571886 CEBPAP49715 358 aaPredicted RBP16■□□□□ 0.15
GTF3C1-213ENST00000571886 A2MP01023 1474 aa15.99■□□□□ 0.15
GTF3C1-213ENST00000571886 RSPH4AQ5TD94 716 aa15.99■□□□□ 0.15
GTF3C1-213ENST00000571886 RTEL1-TNFRSF6BF6WH68 1400 aa15.99■□□□□ 0.15
GTF3C1-213ENST00000571886 ARHGEF5Q12774 1597 aa15.99■□□□□ 0.15
GTF3C1-213ENST00000571886 PPARGC1BQ86YN6 1023 aaKnown RBP15.98■□□□□ 0.15
GTF3C1-213ENST00000571886 PLXNC1O60486 1568 aa15.97■□□□□ 0.15
GTF3C1-213ENST00000571886 ADGBQ8N7X0 1667 aa15.97■□□□□ 0.15
GTF3C1-213ENST00000571886 PTPN23Q9H3S7 1636 aa15.97■□□□□ 0.15
GTF3C1-213ENST00000571886 TSPY4P0CV99 314 aa15.96■□□□□ 0.15
GTF3C1-213ENST00000571886 TSPY10P0CW01 314 aa15.96■□□□□ 0.15
GTF3C1-213ENST00000571886 FGD6Q6ZV73 1430 aa15.94■□□□□ 0.14
GTF3C1-213ENST00000571886 GGT6Q6P531 493 aa15.94■□□□□ 0.14
GTF3C1-213ENST00000571886 DHX29Q7Z478 1369 aaKnown RBP15.94■□□□□ 0.14
GTF3C1-213ENST00000571886 ABCC5O15440 1437 aa15.93■□□□□ 0.14
GTF3C1-213ENST00000571886 MAST1Q9Y2H9 1570 aa15.92■□□□□ 0.14
GTF3C1-213ENST00000571886 TCOF1Q13428 1488 aaKnown RBP15.91■□□□□ 0.14
GTF3C1-213ENST00000571886 C3P01024 1663 aa15.91■□□□□ 0.14
GTF3C1-213ENST00000571886 KIF3BO15066 747 aa15.9■□□□□ 0.14
GTF3C1-213ENST00000571886 LMTK3Q96Q04 1460 aa15.9■□□□□ 0.14
GTF3C1-213ENST00000571886 ESF1Q9H501 851 aaKnown RBP15.89■□□□□ 0.13
GTF3C1-213ENST00000571886 DAPK1P53355 1430 aa15.88■□□□□ 0.13
GTF3C1-213ENST00000571886 HSPA2P54652 639 aa15.88■□□□□ 0.13
GTF3C1-213ENST00000571886 CLTCQ00610 1675 aaKnown RBP15.88■□□□□ 0.13
GTF3C1-213ENST00000571886 CHIC2Q9UKJ5 165 aa15.87■□□□□ 0.13
GTF3C1-213ENST00000571886 ZMYM3Q14202 1370 aa15.87■□□□□ 0.13
GTF3C1-213ENST00000571886 DNMT1P26358 1616 aaKnown RBP15.86■□□□□ 0.13
GTF3C1-213ENST00000571886 CROCC2H7BZ55 1655 aa15.86■□□□□ 0.13
GTF3C1-213ENST00000571886 FAM50AQ14320 339 aaKnown RBP15.86■□□□□ 0.13
GTF3C1-213ENST00000571886 SETD1BQ9UPS6 1966 aaKnown RBP15.86■□□□□ 0.13
GTF3C1-213ENST00000571886 CNTLNQ9NXG0 1405 aa15.85■□□□□ 0.13
GTF3C1-213ENST00000571886 RRP7BPQ9NSQ0 103 aa15.85■□□□□ 0.13
GTF3C1-213ENST00000571886 MROH2AA6NES4 1674 aa15.83■□□□□ 0.13
GTF3C1-213ENST00000571886 SHANK2Q9UPX8 1470 aa15.83■□□□□ 0.12
GTF3C1-213ENST00000571886 PPP6R1Q9UPN7 881 aa15.82■□□□□ 0.12
GTF3C1-213ENST00000571886 PREX1Q8TCU6 1659 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms