RNA–Protein interactions for RNA: ENST00000571190.1

CIITA-206, Transcript of class II major histocompatibility complex transactivator, humanhuman

Gene CIITA, Length 479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-206ENST00000571190 ZFYVE16Q7Z3T8 1539 aa28.89■■■□□ 2.21
CIITA-206ENST00000571190 TROQ12816 1431 aaPredicted RBP28.88■■■□□ 2.21
CIITA-206ENST00000571190 KIF14Q15058 1648 aa28.83■■■□□ 2.21
CIITA-206ENST00000571190 SIGLEC1Q9BZZ2 1709 aa28.82■■■□□ 2.2
CIITA-206ENST00000571190 LMTK3Q96Q04 1460 aa28.79■■■□□ 2.2
CIITA-206ENST00000571190 MLECQ14165 292 aa28.78■■■□□ 2.2
CIITA-206ENST00000571190 CLIP1P30622 1438 aa28.77■■■□□ 2.2
CIITA-206ENST00000571190 PCF11O94913 1555 aaKnown RBP28.77■■■□□ 2.2
CIITA-206ENST00000571190 AFAP1Q8N556 730 aa28.77■■■□□ 2.2
CIITA-206ENST00000571190 CASKIN1Q8WXD9 1431 aa28.77■■■□□ 2.2
CIITA-206ENST00000571190 ATP10AO60312 1499 aa28.76■■■□□ 2.19
CIITA-206ENST00000571190 RIMS1Q86UR5 1692 aaKnown RBP28.74■■■□□ 2.19
CIITA-206ENST00000571190 PLPPR3Q6T4P5 718 aa28.73■■■□□ 2.19
CIITA-206ENST00000571190 ARHGAP5Q13017 1502 aa28.73■■■□□ 2.19
CIITA-206ENST00000571190 C9orf84Q5VXU9 1444 aa28.71■■■□□ 2.19
CIITA-206ENST00000571190 LRRIQ1Q96JM4 1722 aa28.71■■■□□ 2.19
CIITA-206ENST00000571190 MYO5CQ9NQX4 1742 aa28.71■■■□□ 2.19
CIITA-206ENST00000571190 ZNF518AQ6AHZ1 1483 aa28.71■■■□□ 2.19
CIITA-206ENST00000571190 HSPA2P54652 639 aa28.69■■■□□ 2.18
CIITA-206ENST00000571190 CCDC18Q5T9S5 1454 aa28.67■■■□□ 2.18
CIITA-206ENST00000571190 ARHGEF12Q9NZN5 1544 aa28.66■■■□□ 2.18
CIITA-206ENST00000571190 KDM5CP41229 1560 aa28.66■■■□□ 2.18
CIITA-206ENST00000571190 TRAPPC8Q9Y2L5 1435 aa28.63■■■□□ 2.17
CIITA-206ENST00000571190 FYCO1Q9BQS8 1478 aa28.6■■■□□ 2.17
CIITA-206ENST00000571190 FBXO41Q8TF61 875 aa28.6■■■□□ 2.17
CIITA-206ENST00000571190 MLH3Q9UHC1 1453 aa28.59■■■□□ 2.17
CIITA-206ENST00000571190 CEBPAP49715 358 aaPredicted RBP28.59■■■□□ 2.17
CIITA-206ENST00000571190 MYT1LQ9UL68 1186 aa28.58■■■□□ 2.17
CIITA-206ENST00000571190 CDC42BPBQ9Y5S2 1711 aa28.57■■■□□ 2.16
CIITA-206ENST00000571190 ABCC1P33527 1531 aa28.56■■■□□ 2.16
CIITA-206ENST00000571190 DIP2CQ9Y2E4 1556 aa28.56■■■□□ 2.16
CIITA-206ENST00000571190 PREX2Q70Z35 1606 aa28.54■■■□□ 2.16
CIITA-206ENST00000571190 FER1L4A9Z1Z3 1794 aa28.52■■■□□ 2.16
CIITA-206ENST00000571190 REREQ9P2R6 1566 aa28.51■■■□□ 2.15
CIITA-206ENST00000571190 GPATCH8Q9UKJ3 1502 aaKnown RBP28.49■■■□□ 2.15
CIITA-206ENST00000571190 ABCA6Q8N139 1617 aa28.49■■■□□ 2.15
CIITA-206ENST00000571190 ZNF777Q9ULD5 760 aaPredicted RBP28.48■■■□□ 2.15
CIITA-206ENST00000571190 AGLP35573 1532 aa28.46■■■□□ 2.15
CIITA-206ENST00000571190 HNRNPMP52272 730 aaKnown RBP eCLIP28.44■■■□□ 2.14
CIITA-206ENST00000571190 ITSN2Q9NZM3 1697 aa28.42■■■□□ 2.14
CIITA-206ENST00000571190 CDC42BPAQ5VT25 1732 aa28.41■■■□□ 2.14
CIITA-206ENST00000571190 SAMD9LQ8IVG5 1584 aa28.41■■■□□ 2.14
CIITA-206ENST00000571190 CFDP1Q9UEE9 299 aaPredicted RBP28.39■■■□□ 2.14
CIITA-206ENST00000571190 KIDINS220Q9ULH0 1771 aa28.38■■■□□ 2.13
CIITA-206ENST00000571190 SYCP2Q9BX26 1530 aa28.38■■■□□ 2.13
CIITA-206ENST00000571190 KIAA1107Q9UPP5 1409 aa28.37■■■□□ 2.13
CIITA-206ENST00000571190 SPAG9O60271 1321 aaKnown RBP28.37■■■□□ 2.13
CIITA-206ENST00000571190 CCNB3Q8WWL7 1395 aa28.37■■■□□ 2.13
CIITA-206ENST00000571190 MTUS2Q5JR59 1369 aa28.36■■■□□ 2.13
CIITA-206ENST00000571190 UHRF1BP1Q6BDS2 1440 aa28.35■■■□□ 2.13
CIITA-206ENST00000571190 PREX1Q8TCU6 1659 aa28.32■■■□□ 2.12
CIITA-206ENST00000571190 CERKQ8TCT0 537 aa28.32■■■□□ 2.12
CIITA-206ENST00000571190 ESF1Q9H501 851 aaKnown RBP28.32■■■□□ 2.12
CIITA-206ENST00000571190 ZNF644Q9H582 1327 aaPredicted RBP28.3■■■□□ 2.12
CIITA-206ENST00000571190 PLEKHH2Q8IVE3 1493 aa28.29■■■□□ 2.12
CIITA-206ENST00000571190 CEP162Q5TB80 1403 aa28.28■■■□□ 2.12
CIITA-206ENST00000571190 CNTLNQ9NXG0 1405 aa28.28■■■□□ 2.12
CIITA-206ENST00000571190 C3P01024 1663 aa28.25■■■□□ 2.11
CIITA-206ENST00000571190 ATP7AQ04656 1500 aa28.24■■■□□ 2.11
CIITA-206ENST00000571190 DMRT2Q9Y5R5 561 aa28.24■■■□□ 2.11
CIITA-206ENST00000571190 ZMYM3Q14202 1370 aa28.23■■■□□ 2.11
CIITA-206ENST00000571190 MBD5Q9P267 1494 aa28.22■■■□□ 2.11
CIITA-206ENST00000571190 A2MP01023 1474 aa28.21■■■□□ 2.11
CIITA-206ENST00000571190 TIAM1Q13009 1591 aa28.21■■■□□ 2.11
CIITA-206ENST00000571190 INO80Q9ULG1 1556 aaPredicted RBP28.2■■■□□ 2.11
CIITA-206ENST00000571190 EHBP1L1Q8N3D4 1523 aa28.2■■■□□ 2.1
CIITA-206ENST00000571190 STRCQ7RTU9 1775 aa28.19■■■□□ 2.1
CIITA-206ENST00000571190 PLXNC1O60486 1568 aa28.19■■■□□ 2.1
CIITA-206ENST00000571190 NPATQ14207 1427 aa28.18■■■□□ 2.1
CIITA-206ENST00000571190 PTPRTO14522 1441 aa28.16■■■□□ 2.1
CIITA-206ENST00000571190 GGT6Q6P531 493 aa28.15■■■□□ 2.1
CIITA-206ENST00000571190 SETD1BQ9UPS6 1966 aaKnown RBP28.15■■■□□ 2.1
CIITA-206ENST00000571190 RTEL1-TNFRSF6BF6WH68 1400 aa28.11■■■□□ 2.09
CIITA-206ENST00000571190 NCOA1Q15788 1441 aa28.11■■■□□ 2.09
CIITA-206ENST00000571190 SUPT6HQ7KZ85 1726 aaKnown RBP28.1■■■□□ 2.09
CIITA-206ENST00000571190 NCOA2Q15596 1464 aa28.09■■■□□ 2.09
CIITA-206ENST00000571190 LOC105371045A0A1W2PR82 267 aa28.09■■■□□ 2.09
CIITA-206ENST00000571190 PPP6R1Q9UPN7 881 aa28.09■■■□□ 2.09
CIITA-206ENST00000571190 MROH2AA6NES4 1674 aa28.08■■■□□ 2.09
CIITA-206ENST00000571190 DHX29Q7Z478 1369 aaKnown RBP28.08■■■□□ 2.09
CIITA-206ENST00000571190 PTPRKQ15262 1439 aa28.08■■■□□ 2.09
CIITA-206ENST00000571190 CAMSAP2Q08AD1 1489 aa28.02■■■□□ 2.08
CIITA-206ENST00000571190 NCKAP5LQ9HCH0 1330 aa28.01■■■□□ 2.07
CIITA-206ENST00000571190 CAMSAP1Q5T5Y3 1602 aa28.01■■■□□ 2.07
CIITA-206ENST00000571190 CCDC141Q6ZP82 1450 aa28.01■■■□□ 2.07
CIITA-206ENST00000571190 CLTCQ00610 1675 aaKnown RBP28■■■□□ 2.07
CIITA-206ENST00000571190 RSPH4AQ5TD94 716 aa28■■■□□ 2.07
CIITA-206ENST00000571190 VPS8Q8N3P4 1428 aa28■■■□□ 2.07
CIITA-206ENST00000571190 LTBP4Q8N2S1 1624 aa27.99■■■□□ 2.07
CIITA-206ENST00000571190 ADGBQ8N7X0 1667 aa27.98■■■□□ 2.07
CIITA-206ENST00000571190 KIF3BO15066 747 aa27.98■■■□□ 2.07
CIITA-206ENST00000571190 LRRC9Q6ZRR7 1453 aa27.95■■■□□ 2.07
CIITA-206ENST00000571190 KANK4Q5T7N3 995 aaPredicted RBP27.95■■■□□ 2.06
CIITA-206ENST00000571190 PLA2R1Q13018 1463 aa27.92■■■□□ 2.06
CIITA-206ENST00000571190 PKD2Q13563 968 aa27.92■■■□□ 2.06
CIITA-206ENST00000571190 FBXO31Q5XUX0 539 aaPredicted RBP27.92■■■□□ 2.06
CIITA-206ENST00000571190 MYO3AQ8NEV4 1616 aa27.92■■■□□ 2.06
CIITA-206ENST00000571190 CEP170BQ9Y4F5 1589 aaPredicted RBP27.91■■■□□ 2.06
CIITA-206ENST00000571190 TCOF1Q13428 1488 aaKnown RBP27.9■■■□□ 2.06
CIITA-206ENST00000571190 TSPY4P0CV99 314 aa27.89■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms