RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 KIF13AQ9H1H9 1805 aa10.19□□□□□ -0.78
VPS53-209ENST00000570771 CCDC18Q5T9S5 1454 aa10.17□□□□□ -0.78
VPS53-209ENST00000570771 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS53-209ENST00000570771 TROQ12816 1431 aaPredicted RBP10.16□□□□□ -0.78
VPS53-209ENST00000570771 PPRC1Q5VV67 1664 aaKnown RBP10.16□□□□□ -0.78
VPS53-209ENST00000570771 PPARGC1BQ86YN6 1023 aaKnown RBP10.15□□□□□ -0.78
VPS53-209ENST00000570771 LRRC9Q6ZRR7 1453 aa10.15□□□□□ -0.78
VPS53-209ENST00000570771 GLI2P10070 1586 aa10.14□□□□□ -0.79
VPS53-209ENST00000570771 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.14□□□□□ -0.79
VPS53-209ENST00000570771 HNRNPUL2Q1KMD3 747 aaKnown RBP10.14□□□□□ -0.79
VPS53-209ENST00000570771 KCNH8Q96L42 1107 aa10.14□□□□□ -0.79
VPS53-209ENST00000570771 FAM69CQ0P6D2 419 aa10.13□□□□□ -0.79
VPS53-209ENST00000570771 ABCA9Q8IUA7 1624 aa10.13□□□□□ -0.79
VPS53-209ENST00000570771 MAP3K4Q9Y6R4 1608 aa10.13□□□□□ -0.79
VPS53-209ENST00000570771 MAP3K1Q13233 1512 aa10.12□□□□□ -0.79
VPS53-209ENST00000570771 EHBP1L1Q8N3D4 1523 aa10.12□□□□□ -0.79
VPS53-209ENST00000570771 NPM1P06748 294 aaKnown RBP eCLIP10.12□□□□□ -0.79
VPS53-209ENST00000570771 NCOA2Q15596 1464 aa10.1□□□□□ -0.79
VPS53-209ENST00000570771 COL17A1Q9UMD9 1497 aaPredicted RBP10.1□□□□□ -0.79
VPS53-209ENST00000570771 SLC4A2P04920 1241 aa10.1□□□□□ -0.79
VPS53-209ENST00000570771 PHLDB1Q86UU1 1377 aa10.1□□□□□ -0.79
VPS53-209ENST00000570771 MTUS2Q5JR59 1369 aa10.09□□□□□ -0.79
VPS53-209ENST00000570771 GPATCH8Q9UKJ3 1502 aaKnown RBP10.08□□□□□ -0.8
VPS53-209ENST00000570771 PLEKHD1A6NEE1 506 aa10.08□□□□□ -0.8
VPS53-209ENST00000570771 CD109Q6YHK3 1445 aa10.07□□□□□ -0.8
VPS53-209ENST00000570771 ARHGEF12Q9NZN5 1544 aa10.07□□□□□ -0.8
VPS53-209ENST00000570771 CDC42BPAQ5VT25 1732 aa10.06□□□□□ -0.8
VPS53-209ENST00000570771 PREX2Q70Z35 1606 aa10.06□□□□□ -0.8
VPS53-209ENST00000570771 CDC42BPBQ9Y5S2 1711 aa10.05□□□□□ -0.8
VPS53-209ENST00000570771 TSPOAP1O95153 1857 aa10.05□□□□□ -0.8
VPS53-209ENST00000570771 PLCH2O75038 1416 aa10.05□□□□□ -0.8
VPS53-209ENST00000570771 FRMPD1Q5SYB0 1578 aa10.05□□□□□ -0.8
VPS53-209ENST00000570771 SAMD9LQ8IVG5 1584 aa10.05□□□□□ -0.8
VPS53-209ENST00000570771 ZNF644Q9H582 1327 aaPredicted RBP10.05□□□□□ -0.8
VPS53-209ENST00000570771 SUPT6HQ7KZ85 1726 aaKnown RBP10.03□□□□□ -0.8
VPS53-209ENST00000570771 FANCAO15360 1455 aa10.03□□□□□ -0.8
VPS53-209ENST00000570771 ARHGAP5Q13017 1502 aa10.02□□□□□ -0.81
VPS53-209ENST00000570771 MYO5CQ9NQX4 1742 aa10.02□□□□□ -0.81
VPS53-209ENST00000570771 CDK11AQ9UQ88 783 aaPredicted RBP10.01□□□□□ -0.81
VPS53-209ENST00000570771 ABCC1P33527 1531 aa10.01□□□□□ -0.81
VPS53-209ENST00000570771 ARAP3Q8WWN8 1544 aa10.01□□□□□ -0.81
VPS53-209ENST00000570771 CCNB3Q8WWL7 1395 aa10.01□□□□□ -0.81
VPS53-209ENST00000570771 MYOM3Q5VTT5 1437 aa10□□□□□ -0.81
VPS53-209ENST00000570771 TRAPPC8Q9Y2L5 1435 aa10□□□□□ -0.81
VPS53-209ENST00000570771 SYCP2Q9BX26 1530 aa10□□□□□ -0.81
VPS53-209ENST00000570771 FGD6Q6ZV73 1430 aa9.99□□□□□ -0.81
VPS53-209ENST00000570771 AKNAQ7Z591 1439 aa9.99□□□□□ -0.81
VPS53-209ENST00000570771 CAMSAP2Q08AD1 1489 aa9.99□□□□□ -0.81
VPS53-209ENST00000570771 SAMD1Q6SPF0 538 aaPredicted RBP9.99□□□□□ -0.81
VPS53-209ENST00000570771 NEO1Q92859 1461 aa9.98□□□□□ -0.81
VPS53-209ENST00000570771 MBD5Q9P267 1494 aa9.98□□□□□ -0.81
VPS53-209ENST00000570771 ADGRL1O94910 1474 aa9.98□□□□□ -0.81
VPS53-209ENST00000570771 RAPGEF3O95398 923 aa9.97□□□□□ -0.81
VPS53-209ENST00000570771 PTPRKQ15262 1439 aa9.97□□□□□ -0.81
VPS53-209ENST00000570771 POGZQ7Z3K3 1410 aa9.97□□□□□ -0.81
VPS53-209ENST00000570771 TCOF1Q13428 1488 aaKnown RBP9.97□□□□□ -0.81
VPS53-209ENST00000570771 ITSN2Q9NZM3 1697 aa9.96□□□□□ -0.81
VPS53-209ENST00000570771 SCAPERQ9BY12 1400 aa9.96□□□□□ -0.82
VPS53-209ENST00000570771 TEX14Q8IWB6 1497 aa9.96□□□□□ -0.82
VPS53-209ENST00000570771 RICTORQ6R327 1708 aa9.96□□□□□ -0.82
VPS53-209ENST00000570771 PIP4P2Q8N4L2 257 aa9.95□□□□□ -0.82
VPS53-209ENST00000570771 CFDP1Q9UEE9 299 aaPredicted RBP9.95□□□□□ -0.82
VPS53-209ENST00000570771 ZNF777Q9ULD5 760 aaPredicted RBP9.95□□□□□ -0.82
VPS53-209ENST00000570771 YEATS2Q9ULM3 1422 aa9.95□□□□□ -0.82
VPS53-209ENST00000570771 KDM6BO15054 1643 aa9.95□□□□□ -0.82
VPS53-209ENST00000570771 PTPN23Q9H3S7 1636 aa9.95□□□□□ -0.82
VPS53-209ENST00000570771 SIGLEC1Q9BZZ2 1709 aa9.95□□□□□ -0.82
VPS53-209ENST00000570771 KDM5CP41229 1560 aa9.94□□□□□ -0.82
VPS53-209ENST00000570771 HNRNPMP52272 730 aaKnown RBP eCLIP9.94□□□□□ -0.82
VPS53-209ENST00000570771 MIA2Q96PC5 1412 aa9.93□□□□□ -0.82
VPS53-209ENST00000570771 RRBP1Q9P2E9 1410 aaKnown RBP9.93□□□□□ -0.82
VPS53-209ENST00000570771 EFCAB2Q5VUJ9 269 aa9.93□□□□□ -0.82
VPS53-209ENST00000570771 AFAP1Q8N556 730 aa9.93□□□□□ -0.82
VPS53-209ENST00000570771 AKT1S1Q96B36 256 aa9.93□□□□□ -0.82
VPS53-209ENST00000570771 CFAP74Q9C0B2 1584 aa9.92□□□□□ -0.82
VPS53-209ENST00000570771 DENND4BO75064 1496 aaPredicted RBP9.92□□□□□ -0.82
VPS53-209ENST00000570771 ABCC5O15440 1437 aa9.92□□□□□ -0.82
VPS53-209ENST00000570771 ZMYM4Q5VZL5 1548 aa9.92□□□□□ -0.82
VPS53-209ENST00000570771 ZFYVE16Q7Z3T8 1539 aa9.92□□□□□ -0.82
VPS53-209ENST00000570771 KIAA1107Q9UPP5 1409 aa9.91□□□□□ -0.82
VPS53-209ENST00000570771 HAX1O00165 279 aa9.91□□□□□ -0.82
VPS53-209ENST00000570771 INO80Q9ULG1 1556 aaPredicted RBP9.91□□□□□ -0.82
VPS53-209ENST00000570771 ABCA6Q8N139 1617 aa9.9□□□□□ -0.82
VPS53-209ENST00000570771 ARHGEF5Q12774 1597 aa9.9□□□□□ -0.82
VPS53-209ENST00000570771 DAPK1P53355 1430 aa9.9□□□□□ -0.83
VPS53-209ENST00000570771 DNMT1P26358 1616 aaKnown RBP9.89□□□□□ -0.83
VPS53-209ENST00000570771 DIP2CQ9Y2E4 1556 aa9.89□□□□□ -0.83
VPS53-209ENST00000570771 ARHGEF40Q8TER5 1519 aa9.89□□□□□ -0.83
VPS53-209ENST00000570771 CCDC141Q6ZP82 1450 aa9.89□□□□□ -0.83
VPS53-209ENST00000570771 CROCC2H7BZ55 1655 aa9.89□□□□□ -0.83
VPS53-209ENST00000570771 KIDINS220Q9ULH0 1771 aa9.88□□□□□ -0.83
VPS53-209ENST00000570771 ZNF518AQ6AHZ1 1483 aa9.88□□□□□ -0.83
VPS53-209ENST00000570771 POLA2Q14181 598 aa9.88□□□□□ -0.83
VPS53-209ENST00000570771 HECW2Q9P2P5 1572 aa9.88□□□□□ -0.83
VPS53-209ENST00000570771 FAM50AQ14320 339 aaKnown RBP9.87□□□□□ -0.83
VPS53-209ENST00000570771 ATP7AQ04656 1500 aa9.87□□□□□ -0.83
VPS53-209ENST00000570771 PLEKHH2Q8IVE3 1493 aa9.86□□□□□ -0.83
VPS53-209ENST00000570771 C9orf84Q5VXU9 1444 aa9.86□□□□□ -0.83
VPS53-209ENST00000570771 MLH3Q9UHC1 1453 aa9.85□□□□□ -0.83
VPS53-209ENST00000570771 MAST1Q9Y2H9 1570 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms