RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 TTC37Q6PGP7 1564 aa16.28■□□□□ 0.2
CDH3-210ENST00000569117 KANK4Q5T7N3 995 aaPredicted RBP16.27■□□□□ 0.2
CDH3-210ENST00000569117 GLI2P10070 1586 aa16.26■□□□□ 0.19
CDH3-210ENST00000569117 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.26■□□□□ 0.19
CDH3-210ENST00000569117 NCOA2Q15596 1464 aa16.26■□□□□ 0.19
CDH3-210ENST00000569117 ITSN2Q9NZM3 1697 aa16.26■□□□□ 0.19
CDH3-210ENST00000569117 KIF13AQ9H1H9 1805 aa16.26■□□□□ 0.19
CDH3-210ENST00000569117 ABCC10Q5T3U5 1492 aa16.25■□□□□ 0.19
CDH3-210ENST00000569117 MYO5CQ9NQX4 1742 aa16.25■□□□□ 0.19
CDH3-210ENST00000569117 CDC42BPAQ5VT25 1732 aa16.24■□□□□ 0.19
CDH3-210ENST00000569117 PREX2Q70Z35 1606 aa16.23■□□□□ 0.19
CDH3-210ENST00000569117 DMRT2Q9Y5R5 561 aa16.23■□□□□ 0.19
CDH3-210ENST00000569117 MAP3K4Q9Y6R4 1608 aa16.23■□□□□ 0.19
CDH3-210ENST00000569117 ATXN8OSP0DMR3 200 aa16.22■□□□□ 0.19
CDH3-210ENST00000569117 ARAP3Q8WWN8 1544 aa16.2■□□□□ 0.18
CDH3-210ENST00000569117 FKBP8Q14318 412 aa16.2■□□□□ 0.18
CDH3-210ENST00000569117 CDC42BPBQ9Y5S2 1711 aa16.19■□□□□ 0.18
CDH3-210ENST00000569117 PHLDB1Q86UU1 1377 aa16.17■□□□□ 0.18
CDH3-210ENST00000569117 MYOM3Q5VTT5 1437 aa16.17■□□□□ 0.18
CDH3-210ENST00000569117 GPATCH8Q9UKJ3 1502 aaKnown RBP16.16■□□□□ 0.18
CDH3-210ENST00000569117 MYCNP04198 464 aaPredicted RBP16.16■□□□□ 0.18
CDH3-210ENST00000569117 CCNB3Q8WWL7 1395 aa16.15■□□□□ 0.18
CDH3-210ENST00000569117 PPARGC1BQ86YN6 1023 aaKnown RBP16.15■□□□□ 0.18
CDH3-210ENST00000569117 KCNH8Q96L42 1107 aa16.15■□□□□ 0.18
CDH3-210ENST00000569117 CFAP74Q9C0B2 1584 aa16.15■□□□□ 0.18
CDH3-210ENST00000569117 PPRC1Q5VV67 1664 aaKnown RBP16.14■□□□□ 0.18
CDH3-210ENST00000569117 PLCH2O75038 1416 aa16.12■□□□□ 0.17
CDH3-210ENST00000569117 MIA2Q96PC5 1412 aa16.12■□□□□ 0.17
CDH3-210ENST00000569117 ARHGAP5Q13017 1502 aa16.12■□□□□ 0.17
CDH3-210ENST00000569117 CD109Q6YHK3 1445 aa16.11■□□□□ 0.17
CDH3-210ENST00000569117 FGD6Q6ZV73 1430 aa16.11■□□□□ 0.17
CDH3-210ENST00000569117 PTPN23Q9H3S7 1636 aa16.11■□□□□ 0.17
CDH3-210ENST00000569117 RRBP1Q9P2E9 1410 aaKnown RBP16.1■□□□□ 0.17
CDH3-210ENST00000569117 TSPOAP1O95153 1857 aa16.1■□□□□ 0.17
CDH3-210ENST00000569117 SAMD9LQ8IVG5 1584 aa16.09■□□□□ 0.17
CDH3-210ENST00000569117 TCOF1Q13428 1488 aaKnown RBP16.09■□□□□ 0.17
CDH3-210ENST00000569117 FAM69CQ0P6D2 419 aa16.08■□□□□ 0.16
CDH3-210ENST00000569117 FANCAO15360 1455 aa16.08■□□□□ 0.16
CDH3-210ENST00000569117 CAMSAP2Q08AD1 1489 aa16.07■□□□□ 0.16
CDH3-210ENST00000569117 TEX14Q8IWB6 1497 aa16.07■□□□□ 0.16
CDH3-210ENST00000569117 ABCC1P33527 1531 aa16.07■□□□□ 0.16
CDH3-210ENST00000569117 NEO1Q92859 1461 aa16.06■□□□□ 0.16
CDH3-210ENST00000569117 PLEKHH2Q8IVE3 1493 aa16.03■□□□□ 0.16
CDH3-210ENST00000569117 CROCC2H7BZ55 1655 aa16.03■□□□□ 0.16
CDH3-210ENST00000569117 CFDP1Q9UEE9 299 aaPredicted RBP16.03■□□□□ 0.16
CDH3-210ENST00000569117 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.02■□□□□ 0.16
CDH3-210ENST00000569117 ARHGEF5Q12774 1597 aa16.02■□□□□ 0.16
CDH3-210ENST00000569117 SYCP2Q9BX26 1530 aa16.02■□□□□ 0.15
CDH3-210ENST00000569117 DNMT1P26358 1616 aaKnown RBP16.01■□□□□ 0.15
CDH3-210ENST00000569117 ADGRL1O94910 1474 aa16■□□□□ 0.15
CDH3-210ENST00000569117 EFCAB2Q5VUJ9 269 aa16■□□□□ 0.15
CDH3-210ENST00000569117 KIAA1107Q9UPP5 1409 aa16■□□□□ 0.15
CDH3-210ENST00000569117 AKNAQ7Z591 1439 aa15.99■□□□□ 0.15
CDH3-210ENST00000569117 TRHP20396 242 aaPredicted RBP15.98■□□□□ 0.15
CDH3-210ENST00000569117 MBD5Q9P267 1494 aa15.97■□□□□ 0.15
CDH3-210ENST00000569117 RICTORQ6R327 1708 aa15.97■□□□□ 0.15
CDH3-210ENST00000569117 ARHGEF12Q9NZN5 1544 aa15.97■□□□□ 0.15
CDH3-210ENST00000569117 CCDC141Q6ZP82 1450 aa15.96■□□□□ 0.14
CDH3-210ENST00000569117 FRMPD1Q5SYB0 1578 aa15.96■□□□□ 0.14
CDH3-210ENST00000569117 ZNF644Q9H582 1327 aaPredicted RBP15.95■□□□□ 0.14
CDH3-210ENST00000569117 SHANK2Q9UPX8 1470 aa15.95■□□□□ 0.14
CDH3-210ENST00000569117 KDM5CP41229 1560 aa15.95■□□□□ 0.14
CDH3-210ENST00000569117 POGZQ7Z3K3 1410 aa15.94■□□□□ 0.14
CDH3-210ENST00000569117 ZNF777Q9ULD5 760 aaPredicted RBP15.94■□□□□ 0.14
CDH3-210ENST00000569117 ADGBQ8N7X0 1667 aa15.94■□□□□ 0.14
CDH3-210ENST00000569117 DAPK1P53355 1430 aa15.94■□□□□ 0.14
CDH3-210ENST00000569117 MAST1Q9Y2H9 1570 aa15.93■□□□□ 0.14
CDH3-210ENST00000569117 ZNF518AQ6AHZ1 1483 aa15.93■□□□□ 0.14
CDH3-210ENST00000569117 SCAPERQ9BY12 1400 aa15.93■□□□□ 0.14
CDH3-210ENST00000569117 INO80Q9ULG1 1556 aaPredicted RBP15.92■□□□□ 0.14
CDH3-210ENST00000569117 FAM50AQ14320 339 aaKnown RBP15.92■□□□□ 0.14
CDH3-210ENST00000569117 ZMYM4Q5VZL5 1548 aa15.92■□□□□ 0.14
CDH3-210ENST00000569117 DENND4BO75064 1496 aaPredicted RBP15.91■□□□□ 0.14
CDH3-210ENST00000569117 ABCC5O15440 1437 aa15.91■□□□□ 0.14
CDH3-210ENST00000569117 TRAPPC8Q9Y2L5 1435 aa15.91■□□□□ 0.14
CDH3-210ENST00000569117 HECW2Q9P2P5 1572 aa15.91■□□□□ 0.14
CDH3-210ENST00000569117 ZFYVE16Q7Z3T8 1539 aa15.9■□□□□ 0.14
CDH3-210ENST00000569117 KDM6BO15054 1643 aa15.9■□□□□ 0.14
CDH3-210ENST00000569117 PLXNC1O60486 1568 aa15.89■□□□□ 0.13
CDH3-210ENST00000569117 TRIM26Q12899 539 aaPredicted RBP15.88■□□□□ 0.13
CDH3-210ENST00000569117 C9orf84Q5VXU9 1444 aa15.87■□□□□ 0.13
CDH3-210ENST00000569117 ADGRL2O95490 1459 aa15.87■□□□□ 0.13
CDH3-210ENST00000569117 COL17A1Q9UMD9 1497 aaPredicted RBP15.87■□□□□ 0.13
CDH3-210ENST00000569117 RSPH4AQ5TD94 716 aa15.87■□□□□ 0.13
CDH3-210ENST00000569117 ATP7AQ04656 1500 aa15.87■□□□□ 0.13
CDH3-210ENST00000569117 PTPRKQ15262 1439 aa15.86■□□□□ 0.13
CDH3-210ENST00000569117 KIDINS220Q9ULH0 1771 aa15.86■□□□□ 0.13
CDH3-210ENST00000569117 HNRNPMP52272 730 aaKnown RBP eCLIP15.86■□□□□ 0.13
CDH3-210ENST00000569117 GCC2Q8IWJ2 1684 aa15.86■□□□□ 0.13
CDH3-210ENST00000569117 MLH3Q9UHC1 1453 aa15.84■□□□□ 0.13
CDH3-210ENST00000569117 RTEL1-TNFRSF6BF6WH68 1400 aa15.84■□□□□ 0.13
CDH3-210ENST00000569117 ROCK1Q13464 1354 aa15.83■□□□□ 0.12
CDH3-210ENST00000569117 ARHGEF40Q8TER5 1519 aa15.83■□□□□ 0.12
CDH3-210ENST00000569117 ABCA6Q8N139 1617 aa15.83■□□□□ 0.12
CDH3-210ENST00000569117 MAGI2Q86UL8 1455 aa15.82■□□□□ 0.12
CDH3-210ENST00000569117 DIP2CQ9Y2E4 1556 aa15.81■□□□□ 0.12
CDH3-210ENST00000569117 AFAP1Q8N556 730 aa15.8■□□□□ 0.12
CDH3-210ENST00000569117 SPAG9O60271 1321 aaKnown RBP15.79■□□□□ 0.12
CDH3-210ENST00000569117 RAPGEF3O95398 923 aa15.79■□□□□ 0.12
CDH3-210ENST00000569117 HFM1A2PYH4 1435 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms