RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 COL17A1Q9UMD9 1497 aaPredicted RBP34.29■■■■□ 3.08
CLN3-234ENST00000568472 ARHGAP5Q13017 1502 aa34.29■■■■□ 3.08
CLN3-234ENST00000568472 NCOA2Q15596 1464 aa34.27■■■■□ 3.08
CLN3-234ENST00000568472 SUPT6HQ7KZ85 1726 aaKnown RBP34.27■■■■□ 3.08
CLN3-234ENST00000568472 CFDP1Q9UEE9 299 aaPredicted RBP34.25■■■■□ 3.07
CLN3-234ENST00000568472 PREX2Q70Z35 1606 aa34.25■■■■□ 3.07
CLN3-234ENST00000568472 DENND4BO75064 1496 aaPredicted RBP34.2■■■■□ 3.07
CLN3-234ENST00000568472 ADGRL1O94910 1474 aa34.2■■■■□ 3.07
CLN3-234ENST00000568472 CDC42BPAQ5VT25 1732 aa34.19■■■■□ 3.06
CLN3-234ENST00000568472 CDC42BPBQ9Y5S2 1711 aa34.18■■■■□ 3.06
CLN3-234ENST00000568472 SCAPERQ9BY12 1400 aa34.18■■■■□ 3.06
CLN3-234ENST00000568472 RAPGEF3O95398 923 aa34.16■■■■□ 3.06
CLN3-234ENST00000568472 ZNF777Q9ULD5 760 aaPredicted RBP34.14■■■■□ 3.06
CLN3-234ENST00000568472 ITSN2Q9NZM3 1697 aa34.12■■■■□ 3.05
CLN3-234ENST00000568472 PLEKHH2Q8IVE3 1493 aa34.12■■■■□ 3.05
CLN3-234ENST00000568472 KIAA1107Q9UPP5 1409 aa34.08■■■■□ 3.05
CLN3-234ENST00000568472 POGZQ7Z3K3 1410 aa34.07■■■■□ 3.04
CLN3-234ENST00000568472 MYOM3Q5VTT5 1437 aa34.06■■■■□ 3.04
CLN3-234ENST00000568472 MIA2Q96PC5 1412 aa34.04■■■■□ 3.04
CLN3-234ENST00000568472 ABCC1P33527 1531 aa34.04■■■■□ 3.04
CLN3-234ENST00000568472 ZNF518AQ6AHZ1 1483 aa34.04■■■■□ 3.04
CLN3-234ENST00000568472 SAMD9LQ8IVG5 1584 aa34.02■■■■□ 3.04
CLN3-234ENST00000568472 FRMPD1Q5SYB0 1578 aa34■■■■□ 3.03
CLN3-234ENST00000568472 RICTORQ6R327 1708 aa34■■■■□ 3.03
CLN3-234ENST00000568472 MAGI2Q86UL8 1455 aa34■■■■□ 3.03
CLN3-234ENST00000568472 AFAP1Q8N556 730 aa33.99■■■■□ 3.03
CLN3-234ENST00000568472 HNRNPMP52272 730 aaKnown RBP eCLIP33.98■■■■□ 3.03
CLN3-234ENST00000568472 RSPH4AQ5TD94 716 aa33.98■■■■□ 3.03
CLN3-234ENST00000568472 ARHGEF12Q9NZN5 1544 aa33.98■■■■□ 3.03
CLN3-234ENST00000568472 ZNF644Q9H582 1327 aaPredicted RBP33.98■■■■□ 3.03
CLN3-234ENST00000568472 ZMYM4Q5VZL5 1548 aa33.97■■■■□ 3.03
CLN3-234ENST00000568472 TRAPPC8Q9Y2L5 1435 aa33.95■■■■□ 3.02
CLN3-234ENST00000568472 SYCP2Q9BX26 1530 aa33.93■■■■□ 3.02
CLN3-234ENST00000568472 KDM5CP41229 1560 aa33.91■■■■□ 3.02
CLN3-234ENST00000568472 CAMSAP2Q08AD1 1489 aa33.91■■■■□ 3.02
CLN3-234ENST00000568472 MBD5Q9P267 1494 aa33.89■■■■□ 3.02
CLN3-234ENST00000568472 MLH3Q9UHC1 1453 aa33.88■■■■□ 3.01
CLN3-234ENST00000568472 FGD6Q6ZV73 1430 aa33.87■■■■□ 3.01
CLN3-234ENST00000568472 MYT1LQ9UL68 1186 aa33.86■■■■□ 3.01
CLN3-234ENST00000568472 SPAG9O60271 1321 aaKnown RBP33.85■■■■□ 3.01
CLN3-234ENST00000568472 PPARGC1BQ86YN6 1023 aaKnown RBP33.84■■■■□ 3.01
CLN3-234ENST00000568472 ZFYVE16Q7Z3T8 1539 aa33.84■■■■□ 3.01
CLN3-234ENST00000568472 ARHGEF40Q8TER5 1519 aa33.8■■■■□ 3
CLN3-234ENST00000568472 CCDC141Q6ZP82 1450 aa33.8■■■■□ 3
CLN3-234ENST00000568472 HECW2Q9P2P5 1572 aa33.8■■■■□ 3
CLN3-234ENST00000568472 YEATS2Q9ULM3 1422 aa33.79■■■■□ 3
CLN3-234ENST00000568472 TSPY4P0CV99 314 aa33.79■■■■□ 3
CLN3-234ENST00000568472 TSPY10P0CW01 314 aa33.79■■■■□ 3
CLN3-234ENST00000568472 TCOF1Q13428 1488 aaKnown RBP33.79■■■■□ 3
CLN3-234ENST00000568472 ARHGEF5Q12774 1597 aa33.79■■■■□ 3
CLN3-234ENST00000568472 PTPN23Q9H3S7 1636 aa33.77■■■■□ 3
CLN3-234ENST00000568472 ATP10AO60312 1499 aa33.76■■■■□ 3
CLN3-234ENST00000568472 RTEL1-TNFRSF6BF6WH68 1400 aa33.76■■■□□ 2.99
CLN3-234ENST00000568472 C9orf84Q5VXU9 1444 aa33.7■■■□□ 2.98
CLN3-234ENST00000568472 ATP7AQ04656 1500 aa33.69■■■□□ 2.98
CLN3-234ENST00000568472 FAM50AQ14320 339 aaKnown RBP33.68■■■□□ 2.98
CLN3-234ENST00000568472 KIDINS220Q9ULH0 1771 aa33.67■■■□□ 2.98
CLN3-234ENST00000568472 ARID4BQ4LE39 1312 aaPredicted RBP33.66■■■□□ 2.98
CLN3-234ENST00000568472 INO80Q9ULG1 1556 aaPredicted RBP33.66■■■□□ 2.98
CLN3-234ENST00000568472 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.65■■■□□ 2.98
CLN3-234ENST00000568472 DIP2CQ9Y2E4 1556 aa33.64■■■□□ 2.98
CLN3-234ENST00000568472 REREQ9P2R6 1566 aa33.63■■■□□ 2.97
CLN3-234ENST00000568472 ABCC5O15440 1437 aa33.62■■■□□ 2.97
CLN3-234ENST00000568472 ABCA6Q8N139 1617 aa33.61■■■□□ 2.97
CLN3-234ENST00000568472 DAPK1P53355 1430 aa33.6■■■□□ 2.97
CLN3-234ENST00000568472 SHANK2Q9UPX8 1470 aa33.59■■■□□ 2.97
CLN3-234ENST00000568472 MAST1Q9Y2H9 1570 aa33.59■■■□□ 2.97
CLN3-234ENST00000568472 DNMT1P26358 1616 aaKnown RBP33.57■■■□□ 2.96
CLN3-234ENST00000568472 RRBP1Q9P2E9 1410 aaKnown RBP33.56■■■□□ 2.96
CLN3-234ENST00000568472 A2MP01023 1474 aa33.55■■■□□ 2.96
CLN3-234ENST00000568472 AGLP35573 1532 aa33.53■■■□□ 2.96
CLN3-234ENST00000568472 DHX29Q7Z478 1369 aaKnown RBP33.52■■■□□ 2.96
CLN3-234ENST00000568472 KDM4FA0A1W2PPD8 638 aa33.52■■■□□ 2.96
CLN3-234ENST00000568472 ADGBQ8N7X0 1667 aa33.49■■■□□ 2.95
CLN3-234ENST00000568472 ANKRD30AQ9BXX3 1397 aa33.47■■■□□ 2.95
CLN3-234ENST00000568472 CROCC2H7BZ55 1655 aa33.46■■■□□ 2.95
CLN3-234ENST00000568472 PLXNC1O60486 1568 aa33.45■■■□□ 2.95
CLN3-234ENST00000568472 BCORL1Q5H9F3 1711 aa33.43■■■□□ 2.94
CLN3-234ENST00000568472 CHIC2Q9UKJ5 165 aa33.43■■■□□ 2.94
CLN3-234ENST00000568472 MLECQ14165 292 aa33.42■■■□□ 2.94
CLN3-234ENST00000568472 SIGLEC1Q9BZZ2 1709 aa33.42■■■□□ 2.94
CLN3-234ENST00000568472 NCOA1Q15788 1441 aa33.41■■■□□ 2.94
CLN3-234ENST00000568472 ADGRL2O95490 1459 aa33.4■■■□□ 2.94
CLN3-234ENST00000568472 KIF15Q9NS87 1388 aa33.4■■■□□ 2.94
CLN3-234ENST00000568472 RRP7BPQ9NSQ0 103 aa33.4■■■□□ 2.94
CLN3-234ENST00000568472 PPP6R1Q9UPN7 881 aa33.38■■■□□ 2.93
CLN3-234ENST00000568472 DUOX2Q9NRD8 1548 aa33.38■■■□□ 2.93
CLN3-234ENST00000568472 ADAMTSL3P82987 1691 aa33.37■■■□□ 2.93
CLN3-234ENST00000568472 ROCK1Q13464 1354 aa33.36■■■□□ 2.93
CLN3-234ENST00000568472 KIF3BO15066 747 aa33.35■■■□□ 2.93
CLN3-234ENST00000568472 ITGAEP38570 1179 aa33.35■■■□□ 2.93
CLN3-234ENST00000568472 PTPRKQ15262 1439 aa33.35■■■□□ 2.93
CLN3-234ENST00000568472 ESF1Q9H501 851 aaKnown RBP33.32■■■□□ 2.92
CLN3-234ENST00000568472 AEBP2Q6ZN18 517 aaPredicted RBP33.31■■■□□ 2.92
CLN3-234ENST00000568472 ERBINQ96RT1 1412 aa33.3■■■□□ 2.92
CLN3-234ENST00000568472 GGT6Q6P531 493 aa33.3■■■□□ 2.92
CLN3-234ENST00000568472 CNTLNQ9NXG0 1405 aa33.26■■■□□ 2.91
CLN3-234ENST00000568472 MADDQ8WXG6 1647 aa33.25■■■□□ 2.91
CLN3-234ENST00000568472 EIF2AK4Q9P2K8 1649 aaKnown RBP33.24■■■□□ 2.91
CLN3-234ENST00000568472 PTPRMP28827 1452 aa33.22■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms