RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 DNMT1P26358 1616 aaKnown RBP28.28■■■□□ 2.12
CLN3-233ENST00000568452 RAB3GAP2Q9H2M9 1393 aa28.27■■■□□ 2.12
CLN3-233ENST00000568452 TTC37Q6PGP7 1564 aa28.27■■■□□ 2.12
CLN3-233ENST00000568452 KCNH8Q96L42 1107 aa28.27■■■□□ 2.12
CLN3-233ENST00000568452 ZNF644Q9H582 1327 aaPredicted RBP28.27■■■□□ 2.12
CLN3-233ENST00000568452 DAPK1P53355 1430 aa28.26■■■□□ 2.11
CLN3-233ENST00000568452 ZNF777Q9ULD5 760 aaPredicted RBP28.25■■■□□ 2.11
CLN3-233ENST00000568452 HFM1A2PYH4 1435 aa28.24■■■□□ 2.11
CLN3-233ENST00000568452 AKNAQ7Z591 1439 aa28.24■■■□□ 2.11
CLN3-233ENST00000568452 ASXL2Q76L83 1435 aa28.22■■■□□ 2.11
CLN3-233ENST00000568452 MYO5CQ9NQX4 1742 aa28.22■■■□□ 2.11
CLN3-233ENST00000568452 ABCC5O15440 1437 aa28.21■■■□□ 2.11
CLN3-233ENST00000568452 CDC42BPBQ9Y5S2 1711 aa28.21■■■□□ 2.11
CLN3-233ENST00000568452 ROCK1Q13464 1354 aa28.18■■■□□ 2.1
CLN3-233ENST00000568452 ARHGAP5Q13017 1502 aa28.17■■■□□ 2.1
CLN3-233ENST00000568452 PLCH2O75038 1416 aa28.17■■■□□ 2.1
CLN3-233ENST00000568452 NAIPQ13075 1403 aa28.17■■■□□ 2.1
CLN3-233ENST00000568452 DHX57Q6P158 1386 aaKnown RBP28.16■■■□□ 2.1
CLN3-233ENST00000568452 CHIC2Q9UKJ5 165 aa28.14■■■□□ 2.1
CLN3-233ENST00000568452 CLSPNQ9HAW4 1339 aa28.14■■■□□ 2.1
CLN3-233ENST00000568452 ARAP3Q8WWN8 1544 aa28.14■■■□□ 2.09
CLN3-233ENST00000568452 PLEKHH2Q8IVE3 1493 aa28.13■■■□□ 2.09
CLN3-233ENST00000568452 SAMD9LQ8IVG5 1584 aa28.13■■■□□ 2.09
CLN3-233ENST00000568452 ARHGEF5Q12774 1597 aa28.13■■■□□ 2.09
CLN3-233ENST00000568452 GCC2Q8IWJ2 1684 aa28.12■■■□□ 2.09
CLN3-233ENST00000568452 CROCC2H7BZ55 1655 aa28.12■■■□□ 2.09
CLN3-233ENST00000568452 ABCA9Q8IUA7 1624 aa28.12■■■□□ 2.09
CLN3-233ENST00000568452 RSPH4AQ5TD94 716 aa28.11■■■□□ 2.09
CLN3-233ENST00000568452 SHANK2Q9UPX8 1470 aa28.1■■■□□ 2.09
CLN3-233ENST00000568452 EFCAB2Q5VUJ9 269 aa28.1■■■□□ 2.09
CLN3-233ENST00000568452 MAPKBP1O60336 1514 aa28.09■■■□□ 2.09
CLN3-233ENST00000568452 RRP7BPQ9NSQ0 103 aa28.08■■■□□ 2.09
CLN3-233ENST00000568452 KIAA1107Q9UPP5 1409 aa28.07■■■□□ 2.08
CLN3-233ENST00000568452 ADGBQ8N7X0 1667 aa28.07■■■□□ 2.08
CLN3-233ENST00000568452 ADGRL2O95490 1459 aa28.07■■■□□ 2.08
CLN3-233ENST00000568452 MBD5Q9P267 1494 aa28.07■■■□□ 2.08
CLN3-233ENST00000568452 ACIN1Q9UKV3 1341 aaKnown RBP28.06■■■□□ 2.08
CLN3-233ENST00000568452 CCDC141Q6ZP82 1450 aa28.04■■■□□ 2.08
CLN3-233ENST00000568452 TSPY4P0CV99 314 aa28.03■■■□□ 2.08
CLN3-233ENST00000568452 TSPY10P0CW01 314 aa28.03■■■□□ 2.08
CLN3-233ENST00000568452 HNRNPMP52272 730 aaKnown RBP eCLIP28.03■■■□□ 2.08
CLN3-233ENST00000568452 ANKRD30AQ9BXX3 1397 aa28.03■■■□□ 2.08
CLN3-233ENST00000568452 NCOA1Q15788 1441 aa28.01■■■□□ 2.07
CLN3-233ENST00000568452 C9orf84Q5VXU9 1444 aa28.01■■■□□ 2.07
CLN3-233ENST00000568452 SYCP2Q9BX26 1530 aa28.01■■■□□ 2.07
CLN3-233ENST00000568452 ABCC1P33527 1531 aa27.96■■■□□ 2.07
CLN3-233ENST00000568452 FANCAO15360 1455 aa27.94■■■□□ 2.06
CLN3-233ENST00000568452 MAST1Q9Y2H9 1570 aa27.94■■■□□ 2.06
CLN3-233ENST00000568452 CD109Q6YHK3 1445 aa27.91■■■□□ 2.06
CLN3-233ENST00000568452 ARHGEF12Q9NZN5 1544 aa27.9■■■□□ 2.06
CLN3-233ENST00000568452 KDM6BO15054 1643 aa27.89■■■□□ 2.06
CLN3-233ENST00000568452 CFAP74Q9C0B2 1584 aa27.87■■■□□ 2.05
CLN3-233ENST00000568452 DIP2BQ9P265 1576 aa27.86■■■□□ 2.05
CLN3-233ENST00000568452 FAM69CQ0P6D2 419 aa27.85■■■□□ 2.05
CLN3-233ENST00000568452 GLI2P10070 1586 aa27.85■■■□□ 2.05
CLN3-233ENST00000568452 ANKRD50Q9ULJ7 1429 aa27.84■■■□□ 2.05
CLN3-233ENST00000568452 TRIM52Q96A61 297 aa27.84■■■□□ 2.05
CLN3-233ENST00000568452 KIF15Q9NS87 1388 aa27.84■■■□□ 2.05
CLN3-233ENST00000568452 ADGRL1O94910 1474 aa27.83■■■□□ 2.05
CLN3-233ENST00000568452 TRAPPC8Q9Y2L5 1435 aa27.82■■■□□ 2.04
CLN3-233ENST00000568452 PLXNC1O60486 1568 aa27.81■■■□□ 2.04
CLN3-233ENST00000568452 TRHP20396 242 aaPredicted RBP27.81■■■□□ 2.04
CLN3-233ENST00000568452 RTEL1-TNFRSF6BF6WH68 1400 aa27.79■■■□□ 2.04
CLN3-233ENST00000568452 SCAPERQ9BY12 1400 aa27.79■■■□□ 2.04
CLN3-233ENST00000568452 MAP3K4Q9Y6R4 1608 aa27.77■■■□□ 2.04
CLN3-233ENST00000568452 NEO1Q92859 1461 aa27.76■■■□□ 2.03
CLN3-233ENST00000568452 SPAG9O60271 1321 aaKnown RBP27.75■■■□□ 2.03
CLN3-233ENST00000568452 KIF13AQ9H1H9 1805 aa27.75■■■□□ 2.03
CLN3-233ENST00000568452 DUOX2Q9NRD8 1548 aa27.72■■■□□ 2.03
CLN3-233ENST00000568452 MPHOSPH9Q99550 1183 aa27.72■■■□□ 2.03
CLN3-233ENST00000568452 AFAP1Q8N556 730 aa27.71■■■□□ 2.03
CLN3-233ENST00000568452 ZNF518AQ6AHZ1 1483 aa27.69■■■□□ 2.02
CLN3-233ENST00000568452 ZFYVE16Q7Z3T8 1539 aa27.69■■■□□ 2.02
CLN3-233ENST00000568452 INO80Q9ULG1 1556 aaPredicted RBP27.67■■■□□ 2.02
CLN3-233ENST00000568452 ERBINQ96RT1 1412 aa27.67■■■□□ 2.02
CLN3-233ENST00000568452 ATP7AQ04656 1500 aa27.66■■■□□ 2.02
CLN3-233ENST00000568452 KDM5DQ9BY66 1539 aa27.65■■■□□ 2.02
CLN3-233ENST00000568452 SLC4A1APQ9BWU0 796 aaKnown RBP27.65■■■□□ 2.02
CLN3-233ENST00000568452 TIMELESSQ9UNS1 1208 aa27.65■■■□□ 2.02
CLN3-233ENST00000568452 DENND4BO75064 1496 aaPredicted RBP27.64■■■□□ 2.02
CLN3-233ENST00000568452 POGZQ7Z3K3 1410 aa27.64■■■□□ 2.02
CLN3-233ENST00000568452 PZPP20742 1482 aa27.64■■■□□ 2.01
CLN3-233ENST00000568452 TSPOAP1O95153 1857 aa27.62■■■□□ 2.01
CLN3-233ENST00000568452 NUP155O75694 1391 aa27.61■■■□□ 2.01
CLN3-233ENST00000568452 SIN3AQ96ST3 1273 aa27.6■■■□□ 2.01
CLN3-233ENST00000568452 KDM5CP41229 1560 aa27.6■■■□□ 2.01
CLN3-233ENST00000568452 NEUROD1Q13562 356 aa27.58■■■□□ 2.01
CLN3-233ENST00000568452 UNC13BO14795 1591 aa27.58■■■□□ 2.01
CLN3-233ENST00000568452 TEX14Q8IWB6 1497 aa27.58■■■□□ 2.01
CLN3-233ENST00000568452 PPRC1Q5VV67 1664 aaKnown RBP27.57■■■□□ 2
CLN3-233ENST00000568452 MYT1LQ9UL68 1186 aa27.57■■■□□ 2
CLN3-233ENST00000568452 MLH3Q9UHC1 1453 aa27.56■■■□□ 2
CLN3-233ENST00000568452 KIDINS220Q9ULH0 1771 aa27.53■■■□□ 2
CLN3-233ENST00000568452 HECW2Q9P2P5 1572 aa27.52■■■□□ 2
CLN3-233ENST00000568452 ANKRD30BQ9BXX2 1392 aa27.52■■■□□ 2
CLN3-233ENST00000568452 MAGI2Q86UL8 1455 aa27.5■■□□□ 1.99
CLN3-233ENST00000568452 DHX29Q7Z478 1369 aaKnown RBP27.5■■□□□ 1.99
CLN3-233ENST00000568452 PKD2Q13563 968 aa27.49■■□□□ 1.99
CLN3-233ENST00000568452 TONSLQ96HA7 1378 aa27.49■■□□□ 1.99
CLN3-233ENST00000568452 FAM135AQ9P2D6 1515 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms