RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 AKNAQ7Z591 1439 aa21.59■■□□□ 1.05
COMMD4-215ENST00000566843 EIF4G2P78344 907 aaKnown RBP eCLIP21.58■■□□□ 1.05
COMMD4-215ENST00000566843 TCOF1Q13428 1488 aaKnown RBP21.58■■□□□ 1.05
COMMD4-215ENST00000566843 NCOA1Q15788 1441 aa21.57■■□□□ 1.04
COMMD4-215ENST00000566843 ZBED9Q6R2W3 1325 aa21.56■■□□□ 1.04
COMMD4-215ENST00000566843 CCDC184Q52MB2 194 aa21.55■■□□□ 1.04
COMMD4-215ENST00000566843 PRKCSHP14314 528 aaPredicted RBP21.55■■□□□ 1.04
COMMD4-215ENST00000566843 PRKRIP1Q9H875 184 aaPredicted RBP21.54■■□□□ 1.04
COMMD4-215ENST00000566843 CCDC7Q96M83 1385 aa21.54■■□□□ 1.04
COMMD4-215ENST00000566843 CEP170Q5SW79 1584 aa21.49■■□□□ 1.03
COMMD4-215ENST00000566843 IQGAP2Q13576 1575 aa21.49■■□□□ 1.03
COMMD4-215ENST00000566843 MAGI3Q5TCQ9 1506 aa21.48■■□□□ 1.03
COMMD4-215ENST00000566843 KDM6BO15054 1643 aa21.48■■□□□ 1.03
COMMD4-215ENST00000566843 POLR1AO95602 1720 aaPredicted RBP21.47■■□□□ 1.03
COMMD4-215ENST00000566843 C11orf95C9JLR9 678 aaPredicted RBP21.47■■□□□ 1.03
COMMD4-215ENST00000566843 KIAA0586Q9BVV6 1533 aa21.46■■□□□ 1.03
COMMD4-215ENST00000566843 RRP7BPQ9NSQ0 103 aa21.45■■□□□ 1.02
COMMD4-215ENST00000566843 B4GALNT3Q6L9W6 998 aa21.45■■□□□ 1.02
COMMD4-215ENST00000566843 NUP160Q12769 1436 aa21.45■■□□□ 1.02
COMMD4-215ENST00000566843 L3MBTL2Q969R5 705 aa21.44■■□□□ 1.02
COMMD4-215ENST00000566843 MRS2Q9HD23 443 aa21.44■■□□□ 1.02
COMMD4-215ENST00000566843 MPHOSPH9Q99550 1183 aa21.43■■□□□ 1.02
COMMD4-215ENST00000566843 FAM9BQ8IZU0 186 aa21.43■■□□□ 1.02
COMMD4-215ENST00000566843 CHD1O14646 1710 aa21.42■■□□□ 1.02
COMMD4-215ENST00000566843 SPATA31E1Q6ZUB1 1445 aa21.41■■□□□ 1.02
COMMD4-215ENST00000566843 MIA2Q96PC5 1412 aa21.41■■□□□ 1.02
COMMD4-215ENST00000566843 SMG6Q86US8 1419 aaKnown RBP21.4■■□□□ 1.02
COMMD4-215ENST00000566843 RPRD2Q5VT52 1461 aaKnown RBP21.39■■□□□ 1.02
COMMD4-215ENST00000566843 TEX14Q8IWB6 1497 aa21.39■■□□□ 1.01
COMMD4-215ENST00000566843 DEKP35659 375 aaKnown RBP21.38■■□□□ 1.01
COMMD4-215ENST00000566843 CHIC2Q9UKJ5 165 aa21.38■■□□□ 1.01
COMMD4-215ENST00000566843 ANKRD30BQ9BXX2 1392 aa21.37■■□□□ 1.01
COMMD4-215ENST00000566843 NOP58Q9Y2X3 529 aaKnown RBP21.37■■□□□ 1.01
COMMD4-215ENST00000566843 RNF123Q5XPI4 1314 aa21.37■■□□□ 1.01
COMMD4-215ENST00000566843 KIF7Q2M1P5 1343 aa21.36■■□□□ 1.01
COMMD4-215ENST00000566843 JPH4Q96JJ6 628 aa21.35■■□□□ 1.01
COMMD4-215ENST00000566843 NBPF8Q3BBV2 869 aa21.35■■□□□ 1.01
COMMD4-215ENST00000566843 ROCK1Q13464 1354 aa21.32■■□□□ 1
COMMD4-215ENST00000566843 DISP1Q96F81 1524 aa21.32■■□□□ 1
COMMD4-215ENST00000566843 EPRSP07814 1512 aaKnown RBP21.3■■□□□ 1
COMMD4-215ENST00000566843 DHX29Q7Z478 1369 aaKnown RBP21.28■■□□□ 1
COMMD4-215ENST00000566843 NUDCQ9Y266 331 aa21.28■■□□□ 1
COMMD4-215ENST00000566843 KIAA0556O60303 1618 aa21.27■■□□□ 1
COMMD4-215ENST00000566843 PAK3O75914 559 aaPredicted RBP21.26■□□□□ 0.99
COMMD4-215ENST00000566843 FOXD1Q16676 465 aa21.26■□□□□ 0.99
COMMD4-215ENST00000566843 DAPK1P53355 1430 aa21.24■□□□□ 0.99
COMMD4-215ENST00000566843 DNMT1P26358 1616 aaKnown RBP21.23■□□□□ 0.99
COMMD4-215ENST00000566843 PRG4Q92954 1404 aaPredicted RBP21.22■□□□□ 0.99
COMMD4-215ENST00000566843 MBD5Q9P267 1494 aa21.21■□□□□ 0.99
COMMD4-215ENST00000566843 IPO9Q96P70 1041 aaKnown RBP21.21■□□□□ 0.99
COMMD4-215ENST00000566843 CARMIL2Q6F5E8 1435 aa21.21■□□□□ 0.99
COMMD4-215ENST00000566843 CDK13Q14004 1512 aaKnown RBP21.2■□□□□ 0.98
COMMD4-215ENST00000566843 ABCC5O15440 1437 aa21.2■□□□□ 0.98
COMMD4-215ENST00000566843 CCDC136Q96JN2 1154 aa21.18■□□□□ 0.98
COMMD4-215ENST00000566843 BCORL1Q5H9F3 1711 aa21.18■□□□□ 0.98
COMMD4-215ENST00000566843 ARID4BQ4LE39 1312 aaPredicted RBP21.18■□□□□ 0.98
COMMD4-215ENST00000566843 ARID3CA6NKF2 412 aa21.17■□□□□ 0.98
COMMD4-215ENST00000566843 ANP32AP39687 249 aaKnown RBP21.17■□□□□ 0.98
COMMD4-215ENST00000566843 CLASP1Q7Z460 1538 aa21.16■□□□□ 0.98
COMMD4-215ENST00000566843 PZPP20742 1482 aa21.15■□□□□ 0.98
COMMD4-215ENST00000566843 NBR1Q14596 966 aa21.15■□□□□ 0.98
COMMD4-215ENST00000566843 SLC4A1APQ9BWU0 796 aaKnown RBP21.13■□□□□ 0.97
COMMD4-215ENST00000566843 PNISRQ8TF01 805 aaKnown RBP21.12■□□□□ 0.97
COMMD4-215ENST00000566843 SHROOM2Q13796 1616 aa21.12■□□□□ 0.97
COMMD4-215ENST00000566843 KIF14Q15058 1648 aa21.12■□□□□ 0.97
COMMD4-215ENST00000566843 KDM5CP41229 1560 aa21.12■□□□□ 0.97
COMMD4-215ENST00000566843 ERCC6L2Q5T890 1561 aa21.12■□□□□ 0.97
COMMD4-215ENST00000566843 OSCARQ8IYS5 282 aa21.12■□□□□ 0.97
COMMD4-215ENST00000566843 USP47Q96K76 1375 aa21.11■□□□□ 0.97
COMMD4-215ENST00000566843 ZBTB47Q9UFB7 747 aaPredicted RBP21.1■□□□□ 0.97
COMMD4-215ENST00000566843 PLB1Q6P1J6 1458 aa21.1■□□□□ 0.97
COMMD4-215ENST00000566843 ROCK2O75116 1388 aaKnown RBP21.09■□□□□ 0.97
COMMD4-215ENST00000566843 LRPPRCP42704 1394 aaKnown RBP21.08■□□□□ 0.96
COMMD4-215ENST00000566843 PTPRGP23470 1445 aa21.06■□□□□ 0.96
COMMD4-215ENST00000566843 KIAA1107Q9UPP5 1409 aa21.06■□□□□ 0.96
COMMD4-215ENST00000566843 UHRF1BP1Q6BDS2 1440 aa21.05■□□□□ 0.96
COMMD4-215ENST00000566843 ADGBQ8N7X0 1667 aa21.04■□□□□ 0.96
COMMD4-215ENST00000566843 RTL5Q5HYW3 569 aaPredicted RBP21.04■□□□□ 0.96
COMMD4-215ENST00000566843 RAPGEF6Q8TEU7 1601 aa21.04■□□□□ 0.96
COMMD4-215ENST00000566843 NUP153P49790 1475 aaKnown RBP21.03■□□□□ 0.96
COMMD4-215ENST00000566843 KTN1Q86UP2 1357 aaKnown RBP21.02■□□□□ 0.96
COMMD4-215ENST00000566843 RALGAPBQ86X10 1494 aa21.02■□□□□ 0.96
COMMD4-215ENST00000566843 ZNF644Q9H582 1327 aaPredicted RBP21.02■□□□□ 0.95
COMMD4-215ENST00000566843 BRD4O60885 1362 aaPredicted RBP21.01■□□□□ 0.95
COMMD4-215ENST00000566843 KIF15Q9NS87 1388 aa21.01■□□□□ 0.95
COMMD4-215ENST00000566843 ADGRL2O95490 1459 aa21.01■□□□□ 0.95
COMMD4-215ENST00000566843 TMC1Q8TDI8 760 aa21.01■□□□□ 0.95
COMMD4-215ENST00000566843 TCERG1O14776 1098 aaKnown RBP20.99■□□□□ 0.95
COMMD4-215ENST00000566843 RRP1P56182 461 aaKnown RBP20.99■□□□□ 0.95
COMMD4-215ENST00000566843 ABCA8O94911 1581 aa20.96■□□□□ 0.95
COMMD4-215ENST00000566843 E9PCH4 1651 aa20.96■□□□□ 0.95
COMMD4-215ENST00000566843 CAMSAP2Q08AD1 1489 aa20.96■□□□□ 0.95
COMMD4-215ENST00000566843 CROCC2H7BZ55 1655 aa20.95■□□□□ 0.95
COMMD4-215ENST00000566843 ARHGEF12Q9NZN5 1544 aa20.95■□□□□ 0.94
COMMD4-215ENST00000566843 MYBBP1AQ9BQG0 1328 aaKnown RBP20.95■□□□□ 0.94
COMMD4-215ENST00000566843 RALBP1Q15311 655 aa20.94■□□□□ 0.94
COMMD4-215ENST00000566843 POLR3GLQ9BT43 218 aa20.94■□□□□ 0.94
COMMD4-215ENST00000566843 MS4A1P11836 297 aa20.94■□□□□ 0.94
COMMD4-215ENST00000566843 ITSN2Q9NZM3 1697 aa20.94■□□□□ 0.94
COMMD4-215ENST00000566843 CNGB1Q14028 1251 aaPredicted RBP20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms