RNA–Protein interactions for RNA: ENST00000566290.5

RAB40C-210, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 753 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-210ENST00000566290 RIMS1Q86UR5 1692 aaKnown RBP25.64■■□□□ 1.7
RAB40C-210ENST00000566290 ATP1B4Q9UN42 357 aaPredicted RBP25.64■■□□□ 1.7
RAB40C-210ENST00000566290 LRRC9Q6ZRR7 1453 aa25.64■■□□□ 1.69
RAB40C-210ENST00000566290 RRBP1Q9P2E9 1410 aaKnown RBP25.63■■□□□ 1.69
RAB40C-210ENST00000566290 ABCA9Q8IUA7 1624 aa25.62■■□□□ 1.69
RAB40C-210ENST00000566290 FRMPD1Q5SYB0 1578 aa25.61■■□□□ 1.69
RAB40C-210ENST00000566290 HECW1Q76N89 1606 aa25.61■■□□□ 1.69
RAB40C-210ENST00000566290 PLEKHD1A6NEE1 506 aa25.59■■□□□ 1.69
RAB40C-210ENST00000566290 LRRIQ1Q96JM4 1722 aa25.59■■□□□ 1.69
RAB40C-210ENST00000566290 NEO1Q92859 1461 aa25.59■■□□□ 1.69
RAB40C-210ENST00000566290 CCDC18Q5T9S5 1454 aa25.57■■□□□ 1.68
RAB40C-210ENST00000566290 ZEB1P37275 1124 aaPredicted RBP25.54■■□□□ 1.68
RAB40C-210ENST00000566290 KANK4Q5T7N3 995 aaPredicted RBP25.52■■□□□ 1.68
RAB40C-210ENST00000566290 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.51■■□□□ 1.672e-6■■■□□ 16.1
RAB40C-210ENST00000566290 TTC37Q6PGP7 1564 aa25.48■■□□□ 1.67
RAB40C-210ENST00000566290 ARHGEF40Q8TER5 1519 aa25.48■■□□□ 1.67
RAB40C-210ENST00000566290 EHBP1L1Q8N3D4 1523 aa25.47■■□□□ 1.67
RAB40C-210ENST00000566290 MLECQ14165 292 aa25.44■■□□□ 1.66
RAB40C-210ENST00000566290 SIGLEC1Q9BZZ2 1709 aa25.43■■□□□ 1.66
RAB40C-210ENST00000566290 DENND4BO75064 1496 aaPredicted RBP25.43■■□□□ 1.66
RAB40C-210ENST00000566290 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.43■■□□□ 1.661e-6■■■□□ 17.3
RAB40C-210ENST00000566290 KIF14Q15058 1648 aa25.42■■□□□ 1.66
RAB40C-210ENST00000566290 RICTORQ6R327 1708 aa25.41■■□□□ 1.66
RAB40C-210ENST00000566290 TROQ12816 1431 aaPredicted RBP25.41■■□□□ 1.66
RAB40C-210ENST00000566290 POGZQ7Z3K3 1410 aa25.41■■□□□ 1.66
RAB40C-210ENST00000566290 CCNB3Q8WWL7 1395 aa25.41■■□□□ 1.66
RAB40C-210ENST00000566290 CDK11AQ9UQ88 783 aaPredicted RBP25.39■■□□□ 1.66
RAB40C-210ENST00000566290 FANCAO15360 1455 aa25.39■■□□□ 1.65
RAB40C-210ENST00000566290 SPATA31D1Q6ZQQ2 1576 aa25.39■■□□□ 1.65
RAB40C-210ENST00000566290 AKNAQ7Z591 1439 aa25.38■■□□□ 1.65
RAB40C-210ENST00000566290 YEATS2Q9ULM3 1422 aa25.37■■□□□ 1.65
RAB40C-210ENST00000566290 SUPT6HQ7KZ85 1726 aaKnown RBP25.36■■□□□ 1.65
RAB40C-210ENST00000566290 PLCH2O75038 1416 aa25.32■■□□□ 1.64
RAB40C-210ENST00000566290 FER1L4A9Z1Z3 1794 aa25.32■■□□□ 1.64
RAB40C-210ENST00000566290 CEBPAP49715 358 aaPredicted RBP25.32■■□□□ 1.64
RAB40C-210ENST00000566290 ZFYVE16Q7Z3T8 1539 aa25.31■■□□□ 1.64
RAB40C-210ENST00000566290 STRCQ7RTU9 1775 aa25.31■■□□□ 1.64
RAB40C-210ENST00000566290 DMRT2Q9Y5R5 561 aa25.3■■□□□ 1.64
RAB40C-210ENST00000566290 MTUS2Q5JR59 1369 aa25.29■■□□□ 1.64
RAB40C-210ENST00000566290 ZMYM4Q5VZL5 1548 aa25.28■■□□□ 1.64
RAB40C-210ENST00000566290 MYO5CQ9NQX4 1742 aa25.26■■□□□ 1.63
RAB40C-210ENST00000566290 PREX1Q8TCU6 1659 aa25.26■■□□□ 1.63
RAB40C-210ENST00000566290 CFAP74Q9C0B2 1584 aa25.24■■□□□ 1.63
RAB40C-210ENST00000566290 NCOA2Q15596 1464 aa25.24■■□□□ 1.63
RAB40C-210ENST00000566290 MAGI2Q86UL8 1455 aa25.22■■□□□ 1.63
RAB40C-210ENST00000566290 ARHGEF12Q9NZN5 1544 aa25.22■■□□□ 1.63
RAB40C-210ENST00000566290 FGD6Q6ZV73 1430 aa25.21■■□□□ 1.63
RAB40C-210ENST00000566290 MYOM3Q5VTT5 1437 aa25.2■■□□□ 1.63
RAB40C-210ENST00000566290 EFCAB2Q5VUJ9 269 aa25.2■■□□□ 1.62
RAB40C-210ENST00000566290 CDC42BPBQ9Y5S2 1711 aa25.2■■□□□ 1.62
RAB40C-210ENST00000566290 SCAPERQ9BY12 1400 aa25.19■■□□□ 1.62
RAB40C-210ENST00000566290 ARHGAP5Q13017 1502 aa25.18■■□□□ 1.62
RAB40C-210ENST00000566290 PREX2Q70Z35 1606 aa25.16■■□□□ 1.62
RAB40C-210ENST00000566290 TCOF1Q13428 1488 aaKnown RBP25.15■■□□□ 1.62
RAB40C-210ENST00000566290 CDC42BPAQ5VT25 1732 aa25.15■■□□□ 1.62
RAB40C-210ENST00000566290 ATP10AO60312 1499 aa25.15■■□□□ 1.62
RAB40C-210ENST00000566290 MIA2Q96PC5 1412 aa25.14■■□□□ 1.62
RAB40C-210ENST00000566290 CLSPNQ9HAW4 1339 aa25.13■■□□□ 1.61
RAB40C-210ENST00000566290 PTPRTO14522 1441 aa25.13■■□□□ 1.61
RAB40C-210ENST00000566290 UHRF1BP1Q6BDS2 1440 aa25.13■■□□□ 1.61
RAB40C-210ENST00000566290 LTBP4Q8N2S1 1624 aa25.12■■□□□ 1.61
RAB40C-210ENST00000566290 SETD1BQ9UPS6 1966 aaKnown RBP25.12■■□□□ 1.61
RAB40C-210ENST00000566290 GPATCH8Q9UKJ3 1502 aaKnown RBP25.12■■□□□ 1.61
RAB40C-210ENST00000566290 C9orf84Q5VXU9 1444 aa25.11■■□□□ 1.61
RAB40C-210ENST00000566290 CCER1Q8TC90 406 aaPredicted RBP25.1■■□□□ 1.61
RAB40C-210ENST00000566290 PTPN23Q9H3S7 1636 aa25.08■■□□□ 1.6
RAB40C-210ENST00000566290 AFAP1Q8N556 730 aa25.06■■□□□ 1.6
RAB40C-210ENST00000566290 ABCC1P33527 1531 aa25.05■■□□□ 1.6
RAB40C-210ENST00000566290 ITSN2Q9NZM3 1697 aa25.04■■□□□ 1.6
RAB40C-210ENST00000566290 SAMD9LQ8IVG5 1584 aa25.03■■□□□ 1.6
RAB40C-210ENST00000566290 ZNF777Q9ULD5 760 aaPredicted RBP25.03■■□□□ 1.6
RAB40C-210ENST00000566290 TRAPPC8Q9Y2L5 1435 aa25.03■■□□□ 1.6
RAB40C-210ENST00000566290 IQSEC2Q5JU85 1478 aa25.02■■□□□ 1.6
RAB40C-210ENST00000566290 ZNF518AQ6AHZ1 1483 aa25■■□□□ 1.59
RAB40C-210ENST00000566290 KDM5CP41229 1560 aa25■■□□□ 1.59
RAB40C-210ENST00000566290 CFDP1Q9UEE9 299 aaPredicted RBP24.99■■□□□ 1.59
RAB40C-210ENST00000566290 SETD5Q9C0A6 1442 aa24.97■■□□□ 1.59
RAB40C-210ENST00000566290 ZNF644Q9H582 1327 aaPredicted RBP24.96■■□□□ 1.59
RAB40C-210ENST00000566290 SYCP2Q9BX26 1530 aa24.96■■□□□ 1.59
RAB40C-210ENST00000566290 C3P01024 1663 aa24.95■■□□□ 1.58
RAB40C-210ENST00000566290 UBAP1LF5GYI3 381 aa24.95■■□□□ 1.58
RAB40C-210ENST00000566290 HNRNPMP52272 730 aaKnown RBP eCLIP24.95■■□□□ 1.58
RAB40C-210ENST00000566290 DHX57Q6P158 1386 aaKnown RBP24.94■■□□□ 1.58
RAB40C-210ENST00000566290 NCOA1Q15788 1441 aa24.94■■□□□ 1.58
RAB40C-210ENST00000566290 HFM1A2PYH4 1435 aa24.93■■□□□ 1.58
RAB40C-210ENST00000566290 MYT1LQ9UL68 1186 aa24.91■■□□□ 1.58
RAB40C-210ENST00000566290 MLH3Q9UHC1 1453 aa24.89■■□□□ 1.58
RAB40C-210ENST00000566290 GCC2Q8IWJ2 1684 aa24.89■■□□□ 1.58
RAB40C-210ENST00000566290 RAB3GAP2Q9H2M9 1393 aa24.89■■□□□ 1.57
RAB40C-210ENST00000566290 DIP2CQ9Y2E4 1556 aa24.88■■□□□ 1.57
RAB40C-210ENST00000566290 ZNF335Q9H4Z2 1342 aaPredicted RBP24.88■■□□□ 1.57
RAB40C-210ENST00000566290 KIAA1107Q9UPP5 1409 aa24.88■■□□□ 1.57
RAB40C-210ENST00000566290 DNMT1P26358 1616 aaKnown RBP24.88■■□□□ 1.57
RAB40C-210ENST00000566290 ABCA6Q8N139 1617 aa24.88■■□□□ 1.57
RAB40C-210ENST00000566290 FAM50AQ14320 339 aaKnown RBP24.88■■□□□ 1.57
RAB40C-210ENST00000566290 KIDINS220Q9ULH0 1771 aa24.87■■□□□ 1.57
RAB40C-210ENST00000566290 NCKAP5LQ9HCH0 1330 aa24.86■■□□□ 1.57
RAB40C-210ENST00000566290 ESF1Q9H501 851 aaKnown RBP24.86■■□□□ 1.57
RAB40C-210ENST00000566290 PLEKHH2Q8IVE3 1493 aa24.85■■□□□ 1.57
RAB40C-210ENST00000566290 MBD5Q9P267 1494 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms