RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 GPATCH8Q9UKJ3 1502 aaKnown RBP27.38■■□□□ 1.97
USB1-209ENST00000564387 DENND4BO75064 1496 aaPredicted RBP27.38■■□□□ 1.97
USB1-209ENST00000564387 ARHGAP5Q13017 1502 aa27.37■■□□□ 1.97
USB1-209ENST00000564387 RAPGEF3O95398 923 aa27.36■■□□□ 1.97
USB1-209ENST00000564387 LRRC9Q6ZRR7 1453 aa27.36■■□□□ 1.97
USB1-209ENST00000564387 ADGRL1O94910 1474 aa27.35■■□□□ 1.97
USB1-209ENST00000564387 RICTORQ6R327 1708 aa27.35■■□□□ 1.97
USB1-209ENST00000564387 SCAPERQ9BY12 1400 aa27.33■■□□□ 1.96
USB1-209ENST00000564387 CCNB3Q8WWL7 1395 aa27.3■■□□□ 1.96
USB1-209ENST00000564387 SUPT6HQ7KZ85 1726 aaKnown RBP27.3■■□□□ 1.96
USB1-209ENST00000564387 KANK4Q5T7N3 995 aaPredicted RBP27.29■■□□□ 1.96
USB1-209ENST00000564387 POGZQ7Z3K3 1410 aa27.29■■□□□ 1.96
USB1-209ENST00000564387 NCOA2Q15596 1464 aa27.29■■□□□ 1.96
USB1-209ENST00000564387 ZMYM4Q5VZL5 1548 aa27.29■■□□□ 1.96
USB1-209ENST00000564387 ABCC1P33527 1531 aa27.26■■□□□ 1.95
USB1-209ENST00000564387 ARHGEF12Q9NZN5 1544 aa27.24■■□□□ 1.95
USB1-209ENST00000564387 SAMD9LQ8IVG5 1584 aa27.23■■□□□ 1.95
USB1-209ENST00000564387 CFDP1Q9UEE9 299 aaPredicted RBP27.23■■□□□ 1.95
USB1-209ENST00000564387 MAGI2Q86UL8 1455 aa27.23■■□□□ 1.95
USB1-209ENST00000564387 ITSN2Q9NZM3 1697 aa27.22■■□□□ 1.95
USB1-209ENST00000564387 ZNF518AQ6AHZ1 1483 aa27.21■■□□□ 1.95
USB1-209ENST00000564387 KIAA1107Q9UPP5 1409 aa27.21■■□□□ 1.95
USB1-209ENST00000564387 KDM5CP41229 1560 aa27.21■■□□□ 1.95
USB1-209ENST00000564387 APLP2Q06481 763 aa27.2■■□□□ 1.94
USB1-209ENST00000564387 PLEKHH2Q8IVE3 1493 aa27.18■■□□□ 1.94
USB1-209ENST00000564387 TRAPPC8Q9Y2L5 1435 aa27.16■■□□□ 1.94
USB1-209ENST00000564387 ARHGEF40Q8TER5 1519 aa27.16■■□□□ 1.94
USB1-209ENST00000564387 AFAP1Q8N556 730 aa27.16■■□□□ 1.94
USB1-209ENST00000564387 ZFYVE16Q7Z3T8 1539 aa27.13■■□□□ 1.93
USB1-209ENST00000564387 ZNF777Q9ULD5 760 aaPredicted RBP27.13■■□□□ 1.93
USB1-209ENST00000564387 YEATS2Q9ULM3 1422 aa27.13■■□□□ 1.93
USB1-209ENST00000564387 MLH3Q9UHC1 1453 aa27.13■■□□□ 1.93
USB1-209ENST00000564387 SYCP2Q9BX26 1530 aa27.12■■□□□ 1.93
USB1-209ENST00000564387 ZNF644Q9H582 1327 aaPredicted RBP27.11■■□□□ 1.93
USB1-209ENST00000564387 KDM4FA0A1W2PPD8 638 aa27.1■■□□□ 1.93
USB1-209ENST00000564387 MBD5Q9P267 1494 aa27.1■■□□□ 1.93
USB1-209ENST00000564387 HNRNPMP52272 730 aaKnown RBP eCLIP27.09■■□□□ 1.93
USB1-209ENST00000564387 MYOM3Q5VTT5 1437 aa27.08■■□□□ 1.93
USB1-209ENST00000564387 HECW2Q9P2P5 1572 aa27.08■■□□□ 1.93
USB1-209ENST00000564387 MIA2Q96PC5 1412 aa27.07■■□□□ 1.92
USB1-209ENST00000564387 ATP10AO60312 1499 aa27.04■■□□□ 1.92
USB1-209ENST00000564387 CAMSAP2Q08AD1 1489 aa27.04■■□□□ 1.92
USB1-209ENST00000564387 KIDINS220Q9ULH0 1771 aa27.02■■□□□ 1.92
USB1-209ENST00000564387 DIP2CQ9Y2E4 1556 aa27.01■■□□□ 1.91
USB1-209ENST00000564387 RSPH4AQ5TD94 716 aa27■■□□□ 1.91
USB1-209ENST00000564387 REREQ9P2R6 1566 aa27■■□□□ 1.91
USB1-209ENST00000564387 SIGLEC1Q9BZZ2 1709 aa26.99■■□□□ 1.91
USB1-209ENST00000564387 C9orf84Q5VXU9 1444 aa26.99■■□□□ 1.91
USB1-209ENST00000564387 ABCA6Q8N139 1617 aa26.98■■□□□ 1.91
USB1-209ENST00000564387 ARHGEF5Q12774 1597 aa26.97■■□□□ 1.91
USB1-209ENST00000564387 INO80Q9ULG1 1556 aaPredicted RBP26.97■■□□□ 1.91
USB1-209ENST00000564387 SPAG9O60271 1321 aaKnown RBP26.97■■□□□ 1.91
USB1-209ENST00000564387 CCDC141Q6ZP82 1450 aa26.94■■□□□ 1.9
USB1-209ENST00000564387 BCORL1Q5H9F3 1711 aa26.94■■□□□ 1.9
USB1-209ENST00000564387 RTEL1-TNFRSF6BF6WH68 1400 aa26.94■■□□□ 1.9
USB1-209ENST00000564387 ADAMTSL3P82987 1691 aa26.94■■□□□ 1.9
USB1-209ENST00000564387 ATP7AQ04656 1500 aa26.94■■□□□ 1.9
USB1-209ENST00000564387 FGD6Q6ZV73 1430 aa26.92■■□□□ 1.9
USB1-209ENST00000564387 TCOF1Q13428 1488 aaKnown RBP26.91■■□□□ 1.9
USB1-209ENST00000564387 AGLP35573 1532 aa26.9■■□□□ 1.9
USB1-209ENST00000564387 PTPN23Q9H3S7 1636 aa26.89■■□□□ 1.9
USB1-209ENST00000564387 ARID4BQ4LE39 1312 aaPredicted RBP26.89■■□□□ 1.89
USB1-209ENST00000564387 MYT1LQ9UL68 1186 aa26.88■■□□□ 1.89
USB1-209ENST00000564387 AEBP2Q6ZN18 517 aaPredicted RBP26.86■■□□□ 1.89
USB1-209ENST00000564387 MAST1Q9Y2H9 1570 aa26.84■■□□□ 1.89
USB1-209ENST00000564387 PLXNC1O60486 1568 aa26.84■■□□□ 1.89
USB1-209ENST00000564387 TSPY4P0CV99 314 aa26.81■■□□□ 1.88
USB1-209ENST00000564387 TSPY10P0CW01 314 aa26.81■■□□□ 1.88
USB1-209ENST00000564387 ADGBQ8N7X0 1667 aa26.81■■□□□ 1.88
USB1-209ENST00000564387 A2MP01023 1474 aa26.81■■□□□ 1.88
USB1-209ENST00000564387 ABCC5O15440 1437 aa26.79■■□□□ 1.88
USB1-209ENST00000564387 MADDQ8WXG6 1647 aa26.79■■□□□ 1.88
USB1-209ENST00000564387 DNMT1P26358 1616 aaKnown RBP26.77■■□□□ 1.88
USB1-209ENST00000564387 SHANK2Q9UPX8 1470 aa26.76■■□□□ 1.87
USB1-209ENST00000564387 DHX29Q7Z478 1369 aaKnown RBP26.76■■□□□ 1.87
USB1-209ENST00000564387 PTPRMP28827 1452 aa26.75■■□□□ 1.87
USB1-209ENST00000564387 DAPK1P53355 1430 aa26.74■■□□□ 1.87
USB1-209ENST00000564387 CROCC2H7BZ55 1655 aa26.74■■□□□ 1.87
USB1-209ENST00000564387 MLECQ14165 292 aa26.72■■□□□ 1.87
USB1-209ENST00000564387 PPARGC1BQ86YN6 1023 aaKnown RBP26.71■■□□□ 1.87
USB1-209ENST00000564387 FER1L4A9Z1Z3 1794 aa26.69■■□□□ 1.86
USB1-209ENST00000564387 RIMS1Q86UR5 1692 aaKnown RBP26.69■■□□□ 1.86
USB1-209ENST00000564387 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.69■■□□□ 1.86
USB1-209ENST00000564387 FAM50AQ14320 339 aaKnown RBP26.64■■□□□ 1.86
USB1-209ENST00000564387 PPP6R1Q9UPN7 881 aa26.63■■□□□ 1.85
USB1-209ENST00000564387 RRBP1Q9P2E9 1410 aaKnown RBP26.62■■□□□ 1.85
USB1-209ENST00000564387 ADGRL2O95490 1459 aa26.62■■□□□ 1.85
USB1-209ENST00000564387 DUOX2Q9NRD8 1548 aa26.61■■□□□ 1.85
USB1-209ENST00000564387 NCOA1Q15788 1441 aa26.6■■□□□ 1.85
USB1-209ENST00000564387 CNTLNQ9NXG0 1405 aa26.6■■□□□ 1.85
USB1-209ENST00000564387 EIF2AK4Q9P2K8 1649 aaKnown RBP26.58■■□□□ 1.85
USB1-209ENST00000564387 ANKRD30AQ9BXX3 1397 aa26.58■■□□□ 1.84
USB1-209ENST00000564387 KIF15Q9NS87 1388 aa26.58■■□□□ 1.84
USB1-209ENST00000564387 PTPRKQ15262 1439 aa26.57■■□□□ 1.84
USB1-209ENST00000564387 KIF3BO15066 747 aa26.57■■□□□ 1.84
USB1-209ENST00000564387 FAM135AQ9P2D6 1515 aa26.55■■□□□ 1.84
USB1-209ENST00000564387 MROH2AA6NES4 1674 aa26.55■■□□□ 1.84
USB1-209ENST00000564387 GGT6Q6P531 493 aa26.55■■□□□ 1.84
USB1-209ENST00000564387 RNF17Q9BXT8 1623 aaKnown RBP26.54■■□□□ 1.84
USB1-209ENST00000564387 RRP7BPQ9NSQ0 103 aa26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms