RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 HECW1Q76N89 1606 aa18.17■□□□□ 0.5
CLN3-210ENST00000563874 GCC2Q8IWJ2 1684 aa18.16■□□□□ 0.5
CLN3-210ENST00000563874 ZNF644Q9H582 1327 aaPredicted RBP18.16■□□□□ 0.5
CLN3-210ENST00000563874 B4GALNT3Q6L9W6 998 aa18.15■□□□□ 0.5
CLN3-210ENST00000563874 NCOA1Q15788 1441 aa18.15■□□□□ 0.5
CLN3-210ENST00000563874 PPP4R2Q9NY27 417 aa18.14■□□□□ 0.5
CLN3-210ENST00000563874 DNAJC5Q9H3Z4 198 aa18.14■□□□□ 0.49
CLN3-210ENST00000563874 SLC4A1APQ9BWU0 796 aaKnown RBP18.13■□□□□ 0.49
CLN3-210ENST00000563874 PDS5BQ9NTI5 1447 aa18.13■□□□□ 0.49
CLN3-210ENST00000563874 AKNAQ7Z591 1439 aa18.12■□□□□ 0.49
CLN3-210ENST00000563874 KIF7Q2M1P5 1343 aa18.12■□□□□ 0.49
CLN3-210ENST00000563874 POLR3GLQ9BT43 218 aa18.12■□□□□ 0.49
CLN3-210ENST00000563874 ANKRD30BQ9BXX2 1392 aa18.11■□□□□ 0.49
CLN3-210ENST00000563874 SENP3-EIF4A1A0A087X0R7 540 aa18.11■□□□□ 0.49
CLN3-210ENST00000563874 FANCIQ9NVI1 1328 aa18.11■□□□□ 0.49
CLN3-210ENST00000563874 MIA2Q96PC5 1412 aa18.11■□□□□ 0.49
CLN3-210ENST00000563874 ZNF326Q5BKZ1 582 aaKnown RBP18.09■□□□□ 0.49
CLN3-210ENST00000563874 ZBED9Q6R2W3 1325 aa18.09■□□□□ 0.49
CLN3-210ENST00000563874 RPRD2Q5VT52 1461 aaKnown RBP18.08■□□□□ 0.48
CLN3-210ENST00000563874 IQGAP2Q13576 1575 aa18.08■□□□□ 0.48
CLN3-210ENST00000563874 DAPK1P53355 1430 aa18.07■□□□□ 0.48
CLN3-210ENST00000563874 KIF21AQ7Z4S6 1674 aa18.07■□□□□ 0.48
CLN3-210ENST00000563874 ERICH6BQ5W0A0 696 aa18.06■□□□□ 0.48
CLN3-210ENST00000563874 TEX14Q8IWB6 1497 aa18.05■□□□□ 0.48
CLN3-210ENST00000563874 TARBP1Q13395 1621 aaKnown RBP18.05■□□□□ 0.48
CLN3-210ENST00000563874 ABCC5O15440 1437 aa18.05■□□□□ 0.48
CLN3-210ENST00000563874 WDR62O43379 1518 aa18.04■□□□□ 0.48
CLN3-210ENST00000563874 SPATA31E1Q6ZUB1 1445 aa18.03■□□□□ 0.48
CLN3-210ENST00000563874 ROCK1Q13464 1354 aa18.01■□□□□ 0.47
CLN3-210ENST00000563874 ZNF777Q9ULD5 760 aaPredicted RBP18■□□□□ 0.47
CLN3-210ENST00000563874 PBRM1Q86U86 1689 aa17.98■□□□□ 0.47
CLN3-210ENST00000563874 ADAMTS12P58397 1594 aa17.96■□□□□ 0.47
CLN3-210ENST00000563874 ERCC6Q03468 1493 aa17.96■□□□□ 0.47
CLN3-210ENST00000563874 CFDP1Q9UEE9 299 aaPredicted RBP17.95■□□□□ 0.46
CLN3-210ENST00000563874 DNMT1P26358 1616 aaKnown RBP17.95■□□□□ 0.46
CLN3-210ENST00000563874 NUP153P49790 1475 aaKnown RBP17.94■□□□□ 0.46
CLN3-210ENST00000563874 DHX29Q7Z478 1369 aaKnown RBP17.94■□□□□ 0.46
CLN3-210ENST00000563874 USP47Q96K76 1375 aa17.94■□□□□ 0.46
CLN3-210ENST00000563874 PKD2Q13563 968 aa17.94■□□□□ 0.46
CLN3-210ENST00000563874 PZPP20742 1482 aa17.93■□□□□ 0.46
CLN3-210ENST00000563874 PRG4Q92954 1404 aaPredicted RBP17.93■□□□□ 0.46
CLN3-210ENST00000563874 ZNF608Q9ULD9 1512 aaPredicted RBP17.91■□□□□ 0.46
CLN3-210ENST00000563874 DISP1Q96F81 1524 aa17.9■□□□□ 0.46
CLN3-210ENST00000563874 NUDCQ9Y266 331 aa17.9■□□□□ 0.46
CLN3-210ENST00000563874 SMG6Q86US8 1419 aaKnown RBP17.89■□□□□ 0.45
CLN3-210ENST00000563874 CCDC136Q96JN2 1154 aa17.88■□□□□ 0.45
CLN3-210ENST00000563874 CAMSAP2Q08AD1 1489 aa17.87■□□□□ 0.45
CLN3-210ENST00000563874 TMC1Q8TDI8 760 aa17.87■□□□□ 0.45
CLN3-210ENST00000563874 BCORL1Q5H9F3 1711 aa17.87■□□□□ 0.45
CLN3-210ENST00000563874 KIAA0556O60303 1618 aa17.87■□□□□ 0.45
CLN3-210ENST00000563874 KIAA1107Q9UPP5 1409 aa17.87■□□□□ 0.45
CLN3-210ENST00000563874 KDM2AQ9Y2K7 1162 aa17.87■□□□□ 0.45
CLN3-210ENST00000563874 KIAA0586Q9BVV6 1533 aa17.85■□□□□ 0.45
CLN3-210ENST00000563874 DAXXQ9UER7 740 aaPredicted RBP17.85■□□□□ 0.45
CLN3-210ENST00000563874 CARD11Q9BXL7 1154 aa17.85■□□□□ 0.45
CLN3-210ENST00000563874 MBD5Q9P267 1494 aa17.84■□□□□ 0.45
CLN3-210ENST00000563874 PNISRQ8TF01 805 aaKnown RBP17.84■□□□□ 0.45
CLN3-210ENST00000563874 POLR1AO95602 1720 aaPredicted RBP17.84■□□□□ 0.45
CLN3-210ENST00000563874 RAPGEF6Q8TEU7 1601 aa17.84■□□□□ 0.45
CLN3-210ENST00000563874 PAK3O75914 559 aaPredicted RBP17.84■□□□□ 0.45
CLN3-210ENST00000563874 TROQ12816 1431 aaPredicted RBP17.83■□□□□ 0.44
CLN3-210ENST00000563874 NBR1Q14596 966 aa17.83■□□□□ 0.44
CLN3-210ENST00000563874 PLB1Q6P1J6 1458 aa17.82■□□□□ 0.44
CLN3-210ENST00000563874 NOP58Q9Y2X3 529 aaKnown RBP17.82■□□□□ 0.44
CLN3-210ENST00000563874 GPATCH8Q9UKJ3 1502 aaKnown RBP17.81■□□□□ 0.44
CLN3-210ENST00000563874 MRC2Q9UBG0 1479 aa17.81■□□□□ 0.44
CLN3-210ENST00000563874 SALL2Q9Y467 1007 aaPredicted RBP17.81■□□□□ 0.44
CLN3-210ENST00000563874 FBLN2P98095 1184 aa17.81■□□□□ 0.44
CLN3-210ENST00000563874 ST20-MTHFSA0A0A6YYL1 179 aa17.8■□□□□ 0.44
CLN3-210ENST00000563874 NUP155O75694 1391 aa17.8■□□□□ 0.44
CLN3-210ENST00000563874 ANKRD30AQ9BXX3 1397 aa17.8■□□□□ 0.44
CLN3-210ENST00000563874 RNF123Q5XPI4 1314 aa17.79■□□□□ 0.44
CLN3-210ENST00000563874 ANKRD50Q9ULJ7 1429 aa17.79■□□□□ 0.44
CLN3-210ENST00000563874 KIF14Q15058 1648 aa17.78■□□□□ 0.44
CLN3-210ENST00000563874 KDM5CP41229 1560 aa17.78■□□□□ 0.44
CLN3-210ENST00000563874 DCAF11Q8TEB1 546 aa17.77■□□□□ 0.44
CLN3-210ENST00000563874 DEKP35659 375 aaKnown RBP17.76■□□□□ 0.43
CLN3-210ENST00000563874 GRIN2AQ12879 1464 aa17.76■□□□□ 0.43
CLN3-210ENST00000563874 CHMP7Q8WUX9 453 aaPredicted RBP17.75■□□□□ 0.43
CLN3-210ENST00000563874 ARID4BQ4LE39 1312 aaPredicted RBP17.75■□□□□ 0.43
CLN3-210ENST00000563874 IFT140Q96RY7 1462 aa17.74■□□□□ 0.43
CLN3-210ENST00000563874 EIF5BO60841 1220 aaKnown RBP17.74■□□□□ 0.43
CLN3-210ENST00000563874 KIF15Q9NS87 1388 aa17.73■□□□□ 0.43
CLN3-210ENST00000563874 ADGRL2O95490 1459 aa17.73■□□□□ 0.43
CLN3-210ENST00000563874 ROCK2O75116 1388 aaKnown RBP17.73■□□□□ 0.43
CLN3-210ENST00000563874 ANP32AP39687 249 aaKnown RBP17.73■□□□□ 0.43
CLN3-210ENST00000563874 ADGBQ8N7X0 1667 aa17.72■□□□□ 0.43
CLN3-210ENST00000563874 RALGAPBQ86X10 1494 aa17.72■□□□□ 0.43
CLN3-210ENST00000563874 MYBBP1AQ9BQG0 1328 aaKnown RBP17.7■□□□□ 0.42
CLN3-210ENST00000563874 ITSN2Q9NZM3 1697 aa17.7■□□□□ 0.42
CLN3-210ENST00000563874 PLEKHD1A6NEE1 506 aa17.7■□□□□ 0.42
CLN3-210ENST00000563874 TSPY4P0CV99 314 aa17.7■□□□□ 0.42
CLN3-210ENST00000563874 TSPY10P0CW01 314 aa17.7■□□□□ 0.42
CLN3-210ENST00000563874 HNRNPMP52272 730 aaKnown RBP eCLIP17.7■□□□□ 0.42
CLN3-210ENST00000563874 UHRF1BP1Q6BDS2 1440 aa17.7■□□□□ 0.42
CLN3-210ENST00000563874 EXOC6Q8TAG9 804 aa17.7■□□□□ 0.42
CLN3-210ENST00000563874 C9orf84Q5VXU9 1444 aa17.69■□□□□ 0.42
CLN3-210ENST00000563874 IPO9Q96P70 1041 aaKnown RBP17.69■□□□□ 0.42
CLN3-210ENST00000563874 LRPPRCP42704 1394 aaKnown RBP17.68■□□□□ 0.42
CLN3-210ENST00000563874 RRP1P56182 461 aaKnown RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms