RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 SUPT6HQ7KZ85 1726 aaKnown RBP26.38■■□□□ 1.81
CLK3-207ENST00000562389 EFCAB2Q5VUJ9 269 aa26.35■■□□□ 1.81
CLK3-207ENST00000562389 GPATCH8Q9UKJ3 1502 aaKnown RBP26.34■■□□□ 1.81
CLK3-207ENST00000562389 FRMPD1Q5SYB0 1578 aa26.34■■□□□ 1.81
CLK3-207ENST00000562389 ADGRL1O94910 1474 aa26.33■■□□□ 1.81
CLK3-207ENST00000562389 RICTORQ6R327 1708 aa26.33■■□□□ 1.81
CLK3-207ENST00000562389 DENND4BO75064 1496 aaPredicted RBP26.32■■□□□ 1.8
CLK3-207ENST00000562389 ITSN2Q9NZM3 1697 aa26.31■■□□□ 1.8
CLK3-207ENST00000562389 CCNB3Q8WWL7 1395 aa26.31■■□□□ 1.8
CLK3-207ENST00000562389 NCOA2Q15596 1464 aa26.3■■□□□ 1.8
CLK3-207ENST00000562389 APLP2Q06481 763 aa26.3■■□□□ 1.8
CLK3-207ENST00000562389 KANK4Q5T7N3 995 aaPredicted RBP26.27■■□□□ 1.8
CLK3-207ENST00000562389 SCAPERQ9BY12 1400 aa26.27■■□□□ 1.8
CLK3-207ENST00000562389 ABCC1P33527 1531 aa26.26■■□□□ 1.79
CLK3-207ENST00000562389 RAPGEF3O95398 923 aa26.26■■□□□ 1.79
CLK3-207ENST00000562389 POGZQ7Z3K3 1410 aa26.25■■□□□ 1.79
CLK3-207ENST00000562389 SAMD9LQ8IVG5 1584 aa26.24■■□□□ 1.79
CLK3-207ENST00000562389 ZMYM4Q5VZL5 1548 aa26.24■■□□□ 1.79
CLK3-207ENST00000562389 CFDP1Q9UEE9 299 aaPredicted RBP26.21■■□□□ 1.79
CLK3-207ENST00000562389 ZNF518AQ6AHZ1 1483 aa26.19■■□□□ 1.78
CLK3-207ENST00000562389 ARHGEF12Q9NZN5 1544 aa26.18■■□□□ 1.78
CLK3-207ENST00000562389 PLEKHH2Q8IVE3 1493 aa26.17■■□□□ 1.78
CLK3-207ENST00000562389 KDM5CP41229 1560 aa26.17■■□□□ 1.78
CLK3-207ENST00000562389 ARHGEF40Q8TER5 1519 aa26.15■■□□□ 1.78
CLK3-207ENST00000562389 SYCP2Q9BX26 1530 aa26.15■■□□□ 1.78
CLK3-207ENST00000562389 ZNF777Q9ULD5 760 aaPredicted RBP26.15■■□□□ 1.78
CLK3-207ENST00000562389 MAGI2Q86UL8 1455 aa26.15■■□□□ 1.78
CLK3-207ENST00000562389 KIAA1107Q9UPP5 1409 aa26.14■■□□□ 1.78
CLK3-207ENST00000562389 ZFYVE16Q7Z3T8 1539 aa26.12■■□□□ 1.77
CLK3-207ENST00000562389 TRAPPC8Q9Y2L5 1435 aa26.12■■□□□ 1.77
CLK3-207ENST00000562389 MYOM3Q5VTT5 1437 aa26.11■■□□□ 1.77
CLK3-207ENST00000562389 HECW2Q9P2P5 1572 aa26.1■■□□□ 1.77
CLK3-207ENST00000562389 AFAP1Q8N556 730 aa26.08■■□□□ 1.77
CLK3-207ENST00000562389 CAMSAP2Q08AD1 1489 aa26.08■■□□□ 1.77
CLK3-207ENST00000562389 MIA2Q96PC5 1412 aa26.07■■□□□ 1.76
CLK3-207ENST00000562389 YEATS2Q9ULM3 1422 aa26.06■■□□□ 1.76
CLK3-207ENST00000562389 ZNF644Q9H582 1327 aaPredicted RBP26.06■■□□□ 1.76
CLK3-207ENST00000562389 MLH3Q9UHC1 1453 aa26.05■■□□□ 1.76
CLK3-207ENST00000562389 MBD5Q9P267 1494 aa26.04■■□□□ 1.76
CLK3-207ENST00000562389 HNRNPMP52272 730 aaKnown RBP eCLIP26.04■■□□□ 1.763e-7■■■■□ 24.6
CLK3-207ENST00000562389 KIDINS220Q9ULH0 1771 aa26.02■■□□□ 1.76
CLK3-207ENST00000562389 ARHGEF5Q12774 1597 aa25.99■■□□□ 1.75
CLK3-207ENST00000562389 DIP2CQ9Y2E4 1556 aa25.99■■□□□ 1.75
CLK3-207ENST00000562389 ABCA6Q8N139 1617 aa25.99■■□□□ 1.75
CLK3-207ENST00000562389 INO80Q9ULG1 1556 aaPredicted RBP25.99■■□□□ 1.75
CLK3-207ENST00000562389 ATP10AO60312 1499 aa25.98■■□□□ 1.75
CLK3-207ENST00000562389 CCDC141Q6ZP82 1450 aa25.98■■□□□ 1.75
CLK3-207ENST00000562389 PTPN23Q9H3S7 1636 aa25.97■■□□□ 1.75
CLK3-207ENST00000562389 C9orf84Q5VXU9 1444 aa25.97■■□□□ 1.75
CLK3-207ENST00000562389 FGD6Q6ZV73 1430 aa25.97■■□□□ 1.75
CLK3-207ENST00000562389 ATP7AQ04656 1500 aa25.96■■□□□ 1.75
CLK3-207ENST00000562389 SIGLEC1Q9BZZ2 1709 aa25.96■■□□□ 1.75
CLK3-207ENST00000562389 REREQ9P2R6 1566 aa25.95■■□□□ 1.75
CLK3-207ENST00000562389 SPAG9O60271 1321 aaKnown RBP25.94■■□□□ 1.74
CLK3-207ENST00000562389 RSPH4AQ5TD94 716 aa25.94■■□□□ 1.74
CLK3-207ENST00000562389 TCOF1Q13428 1488 aaKnown RBP25.93■■□□□ 1.74
CLK3-207ENST00000562389 MYT1LQ9UL68 1186 aa25.93■■□□□ 1.74
CLK3-207ENST00000562389 KDM4FA0A1W2PPD8 638 aa25.91■■□□□ 1.74
CLK3-207ENST00000562389 BCORL1Q5H9F3 1711 aa25.91■■□□□ 1.74
CLK3-207ENST00000562389 RTEL1-TNFRSF6BF6WH68 1400 aa25.9■■□□□ 1.74
CLK3-207ENST00000562389 ADAMTSL3P82987 1691 aa25.87■■□□□ 1.73
CLK3-207ENST00000562389 MAST1Q9Y2H9 1570 aa25.86■■□□□ 1.73
CLK3-207ENST00000562389 ADGBQ8N7X0 1667 aa25.86■■□□□ 1.73
CLK3-207ENST00000562389 ARID4BQ4LE39 1312 aaPredicted RBP25.86■■□□□ 1.73
CLK3-207ENST00000562389 CROCC2H7BZ55 1655 aa25.85■■□□□ 1.73
CLK3-207ENST00000562389 AGLP35573 1532 aa25.84■■□□□ 1.73
CLK3-207ENST00000562389 DNMT1P26358 1616 aaKnown RBP25.84■■□□□ 1.73
CLK3-207ENST00000562389 PPARGC1BQ86YN6 1023 aaKnown RBP25.83■■□□□ 1.73
CLK3-207ENST00000562389 PLXNC1O60486 1568 aa25.82■■□□□ 1.72
CLK3-207ENST00000562389 TSPY4P0CV99 314 aa25.81■■□□□ 1.72
CLK3-207ENST00000562389 TSPY10P0CW01 314 aa25.81■■□□□ 1.72
CLK3-207ENST00000562389 SHANK2Q9UPX8 1470 aa25.8■■□□□ 1.72
CLK3-207ENST00000562389 A2MP01023 1474 aa25.79■■□□□ 1.72
CLK3-207ENST00000562389 AEBP2Q6ZN18 517 aaPredicted RBP25.79■■□□□ 1.72
CLK3-207ENST00000562389 ABCC5O15440 1437 aa25.79■■□□□ 1.72
CLK3-207ENST00000562389 DAPK1P53355 1430 aa25.79■■□□□ 1.72
CLK3-207ENST00000562389 MADDQ8WXG6 1647 aa25.77■■□□□ 1.72
CLK3-207ENST00000562389 FER1L4A9Z1Z3 1794 aa25.74■■□□□ 1.71
CLK3-207ENST00000562389 FAM50AQ14320 339 aaKnown RBP25.72■■□□□ 1.71
CLK3-207ENST00000562389 DHX29Q7Z478 1369 aaKnown RBP25.71■■□□□ 1.71
CLK3-207ENST00000562389 RIMS1Q86UR5 1692 aaKnown RBP25.71■■□□□ 1.71
CLK3-207ENST00000562389 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.69■■□□□ 1.7
CLK3-207ENST00000562389 MLECQ14165 292 aa25.69■■□□□ 1.7
CLK3-207ENST00000562389 RRBP1Q9P2E9 1410 aaKnown RBP25.68■■□□□ 1.7
CLK3-207ENST00000562389 PTPRMP28827 1452 aa25.66■■□□□ 1.7
CLK3-207ENST00000562389 DUOX2Q9NRD8 1548 aa25.64■■□□□ 1.7
CLK3-207ENST00000562389 ADGRL2O95490 1459 aa25.64■■□□□ 1.69
CLK3-207ENST00000562389 EIF2AK4Q9P2K8 1649 aaKnown RBP25.63■■□□□ 1.69
CLK3-207ENST00000562389 ANKRD30AQ9BXX3 1397 aa25.61■■□□□ 1.69
CLK3-207ENST00000562389 KIF15Q9NS87 1388 aa25.61■■□□□ 1.69
CLK3-207ENST00000562389 NCOA1Q15788 1441 aa25.59■■□□□ 1.69
CLK3-207ENST00000562389 PTPRKQ15262 1439 aa25.58■■□□□ 1.69
CLK3-207ENST00000562389 CHIC2Q9UKJ5 165 aa25.58■■□□□ 1.69
CLK3-207ENST00000562389 RNF17Q9BXT8 1623 aaKnown RBP25.58■■□□□ 1.69
CLK3-207ENST00000562389 ERBINQ96RT1 1412 aa25.57■■□□□ 1.68
CLK3-207ENST00000562389 CNTLNQ9NXG0 1405 aa25.57■■□□□ 1.68
CLK3-207ENST00000562389 MROH2AA6NES4 1674 aa25.56■■□□□ 1.68
CLK3-207ENST00000562389 FAM135AQ9P2D6 1515 aa25.55■■□□□ 1.68
CLK3-207ENST00000562389 KIF3BO15066 747 aa25.55■■□□□ 1.68
CLK3-207ENST00000562389 RRP7BPQ9NSQ0 103 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms