RNA–Protein interactions for RNA: ENST00000559598.6

CRNDE-207, Transcript of colorectal neoplasia differentially expressed, humanhuman

TSL 1 (best)

Gene CRNDE, Length 696 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNDE-207ENST00000559598 NKX1-1Q15270 411 aaPredicted RBP12.57□□□□□ -0.4
CRNDE-207ENST00000559598 BBXQ8WY36 941 aaPredicted RBP12.57□□□□□ -0.4
CRNDE-207ENST00000559598 MFRPQ9BY79 579 aa12.56□□□□□ -0.4
CRNDE-207ENST00000559598 PHF8Q9UPP1 1060 aa12.56□□□□□ -0.4
CRNDE-207ENST00000559598 ST18O60284 1047 aa12.54□□□□□ -0.4
CRNDE-207ENST00000559598 NLRP6P59044 892 aa12.54□□□□□ -0.4
CRNDE-207ENST00000559598 BOLA1Q9Y3E2 137 aa12.53□□□□□ -0.4
CRNDE-207ENST00000559598 DPY19L2Q6NUT2 758 aa12.52□□□□□ -0.41
CRNDE-207ENST00000559598 FBXO22Q8NEZ5 403 aa12.52□□□□□ -0.41
CRNDE-207ENST00000559598 TMEM121BQ9BXQ6 578 aaPredicted RBP12.52□□□□□ -0.41
CRNDE-207ENST00000559598 ZCCHC6Q5VYS8 1495 aaKnown RBP12.52□□□□□ -0.41
CRNDE-207ENST00000559598 MS4A4AQ96JQ5 239 aa12.5□□□□□ -0.41
CRNDE-207ENST00000559598 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.49□□□□□ -0.41
CRNDE-207ENST00000559598 SCRIBQ14160 1630 aa12.48□□□□□ -0.41
CRNDE-207ENST00000559598 RYDENQ9NUL5 291 aaKnown RBP12.47□□□□□ -0.41
CRNDE-207ENST00000559598 GTPBP6O43824 516 aaPredicted RBP12.45□□□□□ -0.42
CRNDE-207ENST00000559598 CDAN1Q8IWY9 1227 aa12.42□□□□□ -0.42
CRNDE-207ENST00000559598 SPRYD3Q8NCJ5 442 aa12.41□□□□□ -0.42
CRNDE-207ENST00000559598 PPP1R37O75864 691 aa12.38□□□□□ -0.43
CRNDE-207ENST00000559598 PAXIP1Q6ZW49 1069 aaPredicted RBP12.38□□□□□ -0.43
CRNDE-207ENST00000559598 CFAP44Q96MT7 982 aa12.37□□□□□ -0.43
CRNDE-207ENST00000559598 MICALL2Q8IY33 904 aa12.36□□□□□ -0.43
CRNDE-207ENST00000559598 MARVELD3Q96A59 401 aa12.33□□□□□ -0.44
CRNDE-207ENST00000559598 EMP3P54852 163 aa12.31□□□□□ -0.44
CRNDE-207ENST00000559598 DOK7Q18PE1 504 aa12.31□□□□□ -0.44
CRNDE-207ENST00000559598 CUX2O14529 1486 aa12.31□□□□□ -0.44
CRNDE-207ENST00000559598 PLCB2Q00722 1185 aa12.29□□□□□ -0.44
CRNDE-207ENST00000559598 ZNF710Q8N1W2 664 aa12.29□□□□□ -0.44
CRNDE-207ENST00000559598 RIMBP2O15034 1052 aa12.27□□□□□ -0.45
CRNDE-207ENST00000559598 HOXB3P14651 431 aaPredicted RBP12.27□□□□□ -0.45
CRNDE-207ENST00000559598 FAM205CA6NFA0 338 aa12.21□□□□□ -0.45
CRNDE-207ENST00000559598 HOXB1P14653 301 aaPredicted RBP12.21□□□□□ -0.45
CRNDE-207ENST00000559598 TMEM92Q6UXU6 159 aa12.21□□□□□ -0.45
CRNDE-207ENST00000559598 HS3ST6Q96QI5 342 aa12.2□□□□□ -0.46
CRNDE-207ENST00000559598 ZSWIM6Q9HCJ5 1215 aa12.2□□□□□ -0.46
CRNDE-207ENST00000559598 ERCC6Q03468 1493 aa12.17□□□□□ -0.46
CRNDE-207ENST00000559598 CADPS2Q86UW7 1296 aa12.15□□□□□ -0.46
CRNDE-207ENST00000559598 TSHZ2Q9NRE2 1034 aa12.13□□□□□ -0.47
CRNDE-207ENST00000559598 ERBB3P21860 1342 aa12.12□□□□□ -0.47
CRNDE-207ENST00000559598 KIF3CO14782 793 aa12.12□□□□□ -0.47
CRNDE-207ENST00000559598 TMC2Q8TDI7 906 aa12.12□□□□□ -0.47
CRNDE-207ENST00000559598 NCKAP5LQ9HCH0 1330 aa12.11□□□□□ -0.47
CRNDE-207ENST00000559598 POTEB3A0JP26 581 aa12.1□□□□□ -0.47
CRNDE-207ENST00000559598 C2orf72A6NCS6 295 aa12.1□□□□□ -0.47
CRNDE-207ENST00000559598 HAP1P54257 671 aaPredicted RBP12.1□□□□□ -0.47
CRNDE-207ENST00000559598 POTEBQ6S5H4 581 aa12.1□□□□□ -0.47
CRNDE-207ENST00000559598 SPNS2Q8IVW8 549 aa12.1□□□□□ -0.47
CRNDE-207ENST00000559598 CRISPLD2Q9H0B8 497 aa12.1□□□□□ -0.47
CRNDE-207ENST00000559598 GPHNQ9NQX3 736 aaPredicted RBP12.1□□□□□ -0.47
CRNDE-207ENST00000559598 PDE4AP27815 886 aa12.09□□□□□ -0.47
CRNDE-207ENST00000559598 NCAPD3P42695 1498 aa12.08□□□□□ -0.48
CRNDE-207ENST00000559598 GPR153Q6NV75 609 aa12.07□□□□□ -0.48
CRNDE-207ENST00000559598 KRTAP3-3Q9BYR6 98 aa12.06□□□□□ -0.48
CRNDE-207ENST00000559598 KRTAP3-2Q9BYR7 98 aa12.06□□□□□ -0.48
CRNDE-207ENST00000559598 MMRN1Q13201 1228 aa12.05□□□□□ -0.48
CRNDE-207ENST00000559598 LARP6Q9BRS8 491 aaKnown RBP12.04□□□□□ -0.48
CRNDE-207ENST00000559598 FOXK1P85037 733 aa12.03□□□□□ -0.48
CRNDE-207ENST00000559598 VARS2Q5ST30 1063 aaKnown RBP12.03□□□□□ -0.48
CRNDE-207ENST00000559598 HMGXB3Q12766 1538 aa12.02□□□□□ -0.48
CRNDE-207ENST00000559598 DSG2Q14126 1118 aa12.02□□□□□ -0.49
CRNDE-207ENST00000559598 MFSD10Q14728 455 aa12.01□□□□□ -0.49
CRNDE-207ENST00000559598 DDX27Q96GQ7 796 aaKnown RBP12.01□□□□□ -0.49
CRNDE-207ENST00000559598 ARSIQ5FYB1 569 aa12□□□□□ -0.49
CRNDE-207ENST00000559598 SMARCA2P51531 1590 aa12□□□□□ -0.49
CRNDE-207ENST00000559598 PPP1R15BQ5SWA1 713 aa11.99□□□□□ -0.49
CRNDE-207ENST00000559598 PLPP6Q8IY26 295 aa11.98□□□□□ -0.49
CRNDE-207ENST00000559598 ZNF687Q8N1G0 1237 aa11.98□□□□□ -0.49
CRNDE-207ENST00000559598 THOC2Q8NI27 1593 aaKnown RBP11.97□□□□□ -0.49
CRNDE-207ENST00000559598 ATAD2BQ9ULI0 1458 aa11.97□□□□□ -0.49
CRNDE-207ENST00000559598 SLC34A2O95436 690 aa11.97□□□□□ -0.49
CRNDE-207ENST00000559598 ZNF316A6NFI3 1004 aaPredicted RBP11.94□□□□□ -0.5
CRNDE-207ENST00000559598 WDR70Q9NW82 654 aa11.94□□□□□ -0.5
CRNDE-207ENST00000559598 SMARCA4P51532 1647 aa11.92□□□□□ -0.5
CRNDE-207ENST00000559598 LAMC3Q9Y6N6 1575 aa11.92□□□□□ -0.5
CRNDE-207ENST00000559598 NESP48681 1621 aa11.91□□□□□ -0.5
CRNDE-207ENST00000559598 VSIG10Q8N0Z9 540 aa11.9□□□□□ -0.5
CRNDE-207ENST00000559598 KHSRPQ92945 711 aaKnown RBP eCLIP11.9□□□□□ -0.52e-10■■□□□ 11.6
CRNDE-207ENST00000559598 PCDHGA4Q9Y5G9 962 aa11.9□□□□□ -0.5
CRNDE-207ENST00000559598 KDM2AQ9Y2K7 1162 aa11.89□□□□□ -0.51
CRNDE-207ENST00000559598 NUDT7P0C024 238 aa11.88□□□□□ -0.51
CRNDE-207ENST00000559598 CAMK2BQ13554 666 aa11.87□□□□□ -0.51
CRNDE-207ENST00000559598 BAZ1BQ9UIG0 1483 aaKnown RBP11.87□□□□□ -0.51
CRNDE-207ENST00000559598 KIF21AQ7Z4S6 1674 aa11.85□□□□□ -0.51
CRNDE-207ENST00000559598 PEG3Q9GZU2 1588 aa11.85□□□□□ -0.51
CRNDE-207ENST00000559598 E2F4Q16254 413 aa11.85□□□□□ -0.51
CRNDE-207ENST00000559598 PTCD2Q8WV60 388 aaKnown RBP11.85□□□□□ -0.51
CRNDE-207ENST00000559598 PTGER2P43116 358 aa11.84□□□□□ -0.51
CRNDE-207ENST00000559598 BAZ1AQ9NRL2 1556 aaPredicted RBP11.84□□□□□ -0.51
CRNDE-207ENST00000559598 EMILIN3Q9NT22 766 aa11.83□□□□□ -0.52
CRNDE-207ENST00000559598 PSDA5PKW4 1024 aaPredicted RBP11.82□□□□□ -0.52
CRNDE-207ENST00000559598 SLC24A1O60721 1099 aa11.82□□□□□ -0.52
CRNDE-207ENST00000559598 PBX2P40425 430 aa11.82□□□□□ -0.52
CRNDE-207ENST00000559598 OXER1Q8TDS5 423 aa11.82□□□□□ -0.52
CRNDE-207ENST00000559598 LHX6Q9UPM6 363 aa11.82□□□□□ -0.52
CRNDE-207ENST00000559598 PDS5BQ9NTI5 1447 aa11.81□□□□□ -0.52
CRNDE-207ENST00000559598 UPF1Q92900 1129 aaKnown RBP eCLIP11.81□□□□□ -0.52
CRNDE-207ENST00000559598 TBC1D12O60347 775 aa11.8□□□□□ -0.52
CRNDE-207ENST00000559598 RNF166Q96A37 237 aaPredicted RBP11.78□□□□□ -0.52
CRNDE-207ENST00000559598 MYT1LQ9UL68 1186 aa11.77□□□□□ -0.53
CRNDE-207ENST00000559598 MAP3K9P80192 1104 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms