RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 AXDND1Q5T1B0 1012 aaPredicted RBP11.01□□□□□ -0.65
USP3-211ENST00000559257 TICAM2Q86XR7 235 aa11.01□□□□□ -0.65
USP3-211ENST00000559257 WWC1Q8IX03 1113 aa11.01□□□□□ -0.65
USP3-211ENST00000559257 SENP3Q9H4L4 574 aaPredicted RBP11.01□□□□□ -0.65
USP3-211ENST00000559257 WIZO95785 1651 aa11.01□□□□□ -0.65
USP3-211ENST00000559257 SLC20A2Q08357 652 aa11.01□□□□□ -0.65
USP3-211ENST00000559257 LETM1O95202 739 aaPredicted RBP11□□□□□ -0.65
USP3-211ENST00000559257 ZNF622Q969S3 477 aaKnown RBP eCLIP11□□□□□ -0.65
USP3-211ENST00000559257 CECR2Q9BXF3 1484 aa11□□□□□ -0.65
USP3-211ENST00000559257 VGLL3A8MV65 326 aa10.99□□□□□ -0.65
USP3-211ENST00000559257 TOP2AP11388 1531 aaKnown RBP10.99□□□□□ -0.65
USP3-211ENST00000559257 PTMSP20962 102 aa10.98□□□□□ -0.65
USP3-211ENST00000559257 CCDC9Q9Y3X0 531 aaKnown RBP10.97□□□□□ -0.65
USP3-211ENST00000559257 GOLGA6L3A6NEY3 463 aa10.97□□□□□ -0.65
USP3-211ENST00000559257 TCERG1O14776 1098 aaKnown RBP10.97□□□□□ -0.65
USP3-211ENST00000559257 FAM193AP78312 1265 aa10.97□□□□□ -0.65
USP3-211ENST00000559257 ANP32CO43423 234 aa10.96□□□□□ -0.66
USP3-211ENST00000559257 MS4A1P11836 297 aa10.96□□□□□ -0.66
USP3-211ENST00000559257 ZSCAN20P17040 1043 aaPredicted RBP10.96□□□□□ -0.66
USP3-211ENST00000559257 HDAC5Q9UQL6 1122 aa10.96□□□□□ -0.66
USP3-211ENST00000559257 PPP1R15AO75807 674 aaPredicted RBP10.95□□□□□ -0.66
USP3-211ENST00000559257 HMGB1P09429 215 aaKnown RBP10.95□□□□□ -0.66
USP3-211ENST00000559257 PHF23Q9BUL5 403 aaPredicted RBP10.95□□□□□ -0.66
USP3-211ENST00000559257 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.95□□□□□ -0.66
USP3-211ENST00000559257 DHX57Q6P158 1386 aaKnown RBP10.94□□□□□ -0.66
USP3-211ENST00000559257 MCCP23508 829 aa10.94□□□□□ -0.66
USP3-211ENST00000559257 PSEN1P49768 467 aa10.94□□□□□ -0.66
USP3-211ENST00000559257 ESPNB1AK53 854 aa10.93□□□□□ -0.66
USP3-211ENST00000559257 DNTTIP2Q5QJE6 756 aaKnown RBP10.93□□□□□ -0.66
USP3-211ENST00000559257 TRIM44Q96DX7 344 aaPredicted RBP10.93□□□□□ -0.66
USP3-211ENST00000559257 PEG3Q9GZU2 1588 aa10.93□□□□□ -0.66
USP3-211ENST00000559257 POLR3GLQ9BT43 218 aa10.93□□□□□ -0.66
USP3-211ENST00000559257 BACH2Q9BYV9 841 aa10.92□□□□□ -0.66
USP3-211ENST00000559257 SMARCA4P51532 1647 aa10.92□□□□□ -0.66
USP3-211ENST00000559257 TPRNQ4KMQ1 711 aa10.92□□□□□ -0.66
USP3-211ENST00000559257 CLSTN1O94985 981 aa10.91□□□□□ -0.66
USP3-211ENST00000559257 RIPK4P57078 832 aa10.91□□□□□ -0.66
USP3-211ENST00000559257 YY1AP1Q9H869 796 aa10.91□□□□□ -0.66
USP3-211ENST00000559257 PHF14O94880 888 aa10.9□□□□□ -0.66
USP3-211ENST00000559257 PDE4AP27815 886 aa10.9□□□□□ -0.66
USP3-211ENST00000559257 KIAA1211Q6ZU35 1233 aa10.9□□□□□ -0.66
USP3-211ENST00000559257 PRDM10Q9NQV6 1147 aa10.9□□□□□ -0.66
USP3-211ENST00000559257 FSD2A1L4K1 749 aa10.89□□□□□ -0.67
USP3-211ENST00000559257 FRAT2O75474 233 aaPredicted RBP10.89□□□□□ -0.67
USP3-211ENST00000559257 HNRNPUQ00839 825 aaKnown RBP eCLIP10.89□□□□□ -0.67
USP3-211ENST00000559257 DNAJC2Q99543 621 aaKnown RBP10.89□□□□□ -0.67
USP3-211ENST00000559257 SLC52A1Q9NWF4 448 aa10.89□□□□□ -0.67
USP3-211ENST00000559257 CCDC94Q9BW85 323 aaPredicted RBP10.88□□□□□ -0.67
USP3-211ENST00000559257 APPP05067 770 aa10.87□□□□□ -0.67
USP3-211ENST00000559257 XRCC6P12956 609 aaKnown RBP eCLIP10.87□□□□□ -0.67
USP3-211ENST00000559257 DDX10Q13206 875 aaKnown RBP10.87□□□□□ -0.67
USP3-211ENST00000559257 PLCD4Q9BRC7 762 aa10.87□□□□□ -0.67
USP3-211ENST00000559257 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.86□□□□□ -0.67
USP3-211ENST00000559257 GEMIN8Q9NWZ8 242 aaKnown RBP10.86□□□□□ -0.67
USP3-211ENST00000559257 SMARCA2P51531 1590 aa10.86□□□□□ -0.67
USP3-211ENST00000559257 RNF123Q5XPI4 1314 aa10.86□□□□□ -0.67
USP3-211ENST00000559257 OFD1O75665 1012 aa10.86□□□□□ -0.67
USP3-211ENST00000559257 CEP120Q8N960 986 aa10.85□□□□□ -0.67
USP3-211ENST00000559257 BAZ1BQ9UIG0 1483 aaKnown RBP10.85□□□□□ -0.67
USP3-211ENST00000559257 PATL2C9JE40 543 aaKnown RBP10.85□□□□□ -0.67
USP3-211ENST00000559257 ISY1Q9ULR0 285 aaKnown RBP10.85□□□□□ -0.67
USP3-211ENST00000559257 CEP162Q5TB80 1403 aa10.84□□□□□ -0.67
USP3-211ENST00000559257 ZBED9Q6R2W3 1325 aa10.84□□□□□ -0.67
USP3-211ENST00000559257 TNIKQ9UKE5 1360 aa10.84□□□□□ -0.67
USP3-211ENST00000559257 DYNC1I1O14576 645 aa10.84□□□□□ -0.67
USP3-211ENST00000559257 HNRNPUL2Q1KMD3 747 aaKnown RBP10.84□□□□□ -0.67
USP3-211ENST00000559257 MYCNP04198 464 aaPredicted RBP10.83□□□□□ -0.68
USP3-211ENST00000559257 RALBP1Q15311 655 aa10.83□□□□□ -0.68
USP3-211ENST00000559257 FAM13BQ9NYF5 915 aa10.82□□□□□ -0.68
USP3-211ENST00000559257 POGKQ9P215 609 aa10.82□□□□□ -0.68
USP3-211ENST00000559257 SOX12O15370 315 aa10.82□□□□□ -0.68
USP3-211ENST00000559257 MRE11P49959 708 aa10.82□□□□□ -0.68
USP3-211ENST00000559257 TMED8Q6PL24 325 aaPredicted RBP10.82□□□□□ -0.68
USP3-211ENST00000559257 CCDC88BA6NC98 1476 aa10.81□□□□□ -0.68
USP3-211ENST00000559257 ERBB4Q15303 1308 aa10.81□□□□□ -0.68
USP3-211ENST00000559257 CC2D1BQ5T0F9 858 aaKnown RBP10.81□□□□□ -0.68
USP3-211ENST00000559257 UNC13AQ9UPW8 1703 aa10.8□□□□□ -0.68
USP3-211ENST00000559257 IRX5P78411 483 aaPredicted RBP10.8□□□□□ -0.68
USP3-211ENST00000559257 CARD10Q9BWT7 1032 aa10.8□□□□□ -0.68
USP3-211ENST00000559257 PHLDB1Q86UU1 1377 aa10.79□□□□□ -0.68
USP3-211ENST00000559257 MAPK8IP2Q13387 824 aaPredicted RBP10.79□□□□□ -0.68
USP3-211ENST00000559257 FAM43BQ6ZT52 329 aaPredicted RBP10.79□□□□□ -0.68
USP3-211ENST00000559257 MYH16Q9H6N6 1097 aa10.78□□□□□ -0.68
USP3-211ENST00000559257 TSPYL1Q9H0U9 437 aa10.78□□□□□ -0.68
USP3-211ENST00000559257 GOLGA3Q08378 1498 aa10.78□□□□□ -0.68
USP3-211ENST00000559257 E9PSI1 815 aa10.77□□□□□ -0.68
USP3-211ENST00000559257 NBPF20Q3BBV1 942 aa10.77□□□□□ -0.68
USP3-211ENST00000559257 ZNF592Q92610 1267 aa10.77□□□□□ -0.68
USP3-211ENST00000559257 SMG6Q86US8 1419 aaKnown RBP10.77□□□□□ -0.69
USP3-211ENST00000559257 SETQ01105 290 aaPredicted RBP10.76□□□□□ -0.69
USP3-211ENST00000559257 ABCC8Q09428 1581 aa10.75□□□□□ -0.69
USP3-211ENST00000559257 TMEM132AQ24JP5 1023 aa10.75□□□□□ -0.69
USP3-211ENST00000559257 KIF21BO75037 1637 aa10.75□□□□□ -0.69
USP3-211ENST00000559257 EGFL6Q8IUX8 553 aa10.74□□□□□ -0.69
USP3-211ENST00000559257 NGEFQ8N5V2 710 aa10.74□□□□□ -0.69
USP3-211ENST00000559257 PANK2Q9BZ23 570 aa10.74□□□□□ -0.69
USP3-211ENST00000559257 CGNQ9P2M7 1197 aaKnown RBP10.74□□□□□ -0.69
USP3-211ENST00000559257 IGSF3O75054 1194 aa10.74□□□□□ -0.69
USP3-211ENST00000559257 PUS7Q96PZ0 661 aaKnown RBP10.74□□□□□ -0.69
USP3-211ENST00000559257 CUX2O14529 1486 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms