RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 ARAP3Q8WWN8 1544 aa13.45□□□□□ -0.26
TPM1-213ENST00000558400 BCORL1Q5H9F3 1711 aa13.45□□□□□ -0.26
TPM1-213ENST00000558400 ILDR2Q71H61 639 aa13.45□□□□□ -0.26
TPM1-213ENST00000558400 MADDQ8WXG6 1647 aa13.44□□□□□ -0.26
TPM1-213ENST00000558400 PLCH2O75038 1416 aa13.44□□□□□ -0.26
TPM1-213ENST00000558400 DISP3Q9P2K9 1392 aa13.44□□□□□ -0.26
TPM1-213ENST00000558400 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.43□□□□□ -0.26
TPM1-213ENST00000558400 SPATA31D1Q6ZQQ2 1576 aa13.41□□□□□ -0.26
TPM1-213ENST00000558400 AKNAQ7Z591 1439 aa13.41□□□□□ -0.26
TPM1-213ENST00000558400 RAPGEF3O95398 923 aa13.41□□□□□ -0.26
TPM1-213ENST00000558400 FANCAO15360 1455 aa13.41□□□□□ -0.26
TPM1-213ENST00000558400 RIMS1Q86UR5 1692 aaKnown RBP13.4□□□□□ -0.26
TPM1-213ENST00000558400 MTUS2Q5JR59 1369 aa13.39□□□□□ -0.27
TPM1-213ENST00000558400 DENND4BO75064 1496 aaPredicted RBP13.37□□□□□ -0.27
TPM1-213ENST00000558400 VPS8Q8N3P4 1428 aa13.37□□□□□ -0.27
TPM1-213ENST00000558400 KIF14Q15058 1648 aa13.36□□□□□ -0.27
TPM1-213ENST00000558400 APLP2Q06481 763 aa13.36□□□□□ -0.27
TPM1-213ENST00000558400 CERKQ8TCT0 537 aa13.36□□□□□ -0.27
TPM1-213ENST00000558400 SCAPERQ9BY12 1400 aa13.35□□□□□ -0.27
TPM1-213ENST00000558400 TTC37Q6PGP7 1564 aa13.34□□□□□ -0.27
TPM1-213ENST00000558400 CFAP74Q9C0B2 1584 aa13.34□□□□□ -0.27
TPM1-213ENST00000558400 CFDP1Q9UEE9 299 aaPredicted RBP13.33□□□□□ -0.28
TPM1-213ENST00000558400 CCNB3Q8WWL7 1395 aa13.32□□□□□ -0.28
TPM1-213ENST00000558400 LRRIQ1Q96JM4 1722 aa13.32□□□□□ -0.28
TPM1-213ENST00000558400 FRMPD1Q5SYB0 1578 aa13.32□□□□□ -0.28
TPM1-213ENST00000558400 ARHGAP5Q13017 1502 aa13.31□□□□□ -0.28
TPM1-213ENST00000558400 MAGI2Q86UL8 1455 aa13.3□□□□□ -0.28
TPM1-213ENST00000558400 ARHGEF40Q8TER5 1519 aa13.3□□□□□ -0.28
TPM1-213ENST00000558400 ZNF777Q9ULD5 760 aaPredicted RBP13.3□□□□□ -0.28
TPM1-213ENST00000558400 AFAP1Q8N556 730 aa13.29□□□□□ -0.28
TPM1-213ENST00000558400 MYT1LQ9UL68 1186 aa13.29□□□□□ -0.28
TPM1-213ENST00000558400 MYO5CQ9NQX4 1742 aa13.29□□□□□ -0.28
TPM1-213ENST00000558400 GPATCH8Q9UKJ3 1502 aaKnown RBP13.29□□□□□ -0.28
TPM1-213ENST00000558400 HSPA2P54652 639 aa13.28□□□□□ -0.28
TPM1-213ENST00000558400 MAP3K1Q13233 1512 aa13.28□□□□□ -0.28
TPM1-213ENST00000558400 RSPH4AQ5TD94 716 aa13.27□□□□□ -0.29
TPM1-213ENST00000558400 ARID4BQ4LE39 1312 aaPredicted RBP13.27□□□□□ -0.29
TPM1-213ENST00000558400 POGZQ7Z3K3 1410 aa13.27□□□□□ -0.29
TPM1-213ENST00000558400 ZNF518AQ6AHZ1 1483 aa13.26□□□□□ -0.29
TPM1-213ENST00000558400 EHBP1L1Q8N3D4 1523 aa13.26□□□□□ -0.29
TPM1-213ENST00000558400 FER1L4A9Z1Z3 1794 aa13.25□□□□□ -0.29
TPM1-213ENST00000558400 KIAA1107Q9UPP5 1409 aa13.25□□□□□ -0.29
TPM1-213ENST00000558400 PLEKHH2Q8IVE3 1493 aa13.24□□□□□ -0.29
TPM1-213ENST00000558400 HNRNPMP52272 730 aaKnown RBP eCLIP13.24□□□□□ -0.29
TPM1-213ENST00000558400 KANK4Q5T7N3 995 aaPredicted RBP13.24□□□□□ -0.29
TPM1-213ENST00000558400 RICTORQ6R327 1708 aa13.24□□□□□ -0.29
TPM1-213ENST00000558400 PREX1Q8TCU6 1659 aa13.24□□□□□ -0.29
TPM1-213ENST00000558400 LRRC9Q6ZRR7 1453 aa13.23□□□□□ -0.29
TPM1-213ENST00000558400 TIAM1Q13009 1591 aa13.23□□□□□ -0.29
TPM1-213ENST00000558400 ZMYM4Q5VZL5 1548 aa13.23□□□□□ -0.29
TPM1-213ENST00000558400 CDC42BPBQ9Y5S2 1711 aa13.22□□□□□ -0.29
TPM1-213ENST00000558400 PREX2Q70Z35 1606 aa13.22□□□□□ -0.29
TPM1-213ENST00000558400 NCOA2Q15596 1464 aa13.22□□□□□ -0.29
TPM1-213ENST00000558400 SIGLEC1Q9BZZ2 1709 aa13.22□□□□□ -0.29
TPM1-213ENST00000558400 STRCQ7RTU9 1775 aa13.21□□□□□ -0.29
TPM1-213ENST00000558400 ATP10AO60312 1499 aa13.21□□□□□ -0.3
TPM1-213ENST00000558400 TRAPPC8Q9Y2L5 1435 aa13.21□□□□□ -0.3
TPM1-213ENST00000558400 SPAG9O60271 1321 aaKnown RBP13.2□□□□□ -0.3
TPM1-213ENST00000558400 MLH3Q9UHC1 1453 aa13.2□□□□□ -0.3
TPM1-213ENST00000558400 YEATS2Q9ULM3 1422 aa13.2□□□□□ -0.3
TPM1-213ENST00000558400 CDC42BPAQ5VT25 1732 aa13.19□□□□□ -0.3
TPM1-213ENST00000558400 ZFYVE16Q7Z3T8 1539 aa13.19□□□□□ -0.3
TPM1-213ENST00000558400 ARHGEF12Q9NZN5 1544 aa13.18□□□□□ -0.3
TPM1-213ENST00000558400 ZNF644Q9H582 1327 aaPredicted RBP13.18□□□□□ -0.3
TPM1-213ENST00000558400 TSPY4P0CV99 314 aa13.18□□□□□ -0.3
TPM1-213ENST00000558400 TSPY10P0CW01 314 aa13.18□□□□□ -0.3
TPM1-213ENST00000558400 SUPT6HQ7KZ85 1726 aaKnown RBP13.18□□□□□ -0.3
TPM1-213ENST00000558400 ABCC1P33527 1531 aa13.18□□□□□ -0.3
TPM1-213ENST00000558400 KDM5CP41229 1560 aa13.16□□□□□ -0.3
TPM1-213ENST00000558400 C9orf84Q5VXU9 1444 aa13.16□□□□□ -0.3
TPM1-213ENST00000558400 MIA2Q96PC5 1412 aa13.15□□□□□ -0.3
TPM1-213ENST00000558400 SAMD9LQ8IVG5 1584 aa13.15□□□□□ -0.3
TPM1-213ENST00000558400 MLECQ14165 292 aa13.14□□□□□ -0.31
TPM1-213ENST00000558400 ITSN2Q9NZM3 1697 aa13.14□□□□□ -0.31
TPM1-213ENST00000558400 MBD5Q9P267 1494 aa13.13□□□□□ -0.31
TPM1-213ENST00000558400 ESF1Q9H501 851 aaKnown RBP13.13□□□□□ -0.31
TPM1-213ENST00000558400 SYCP2Q9BX26 1530 aa13.13□□□□□ -0.31
TPM1-213ENST00000558400 RTEL1-TNFRSF6BF6WH68 1400 aa13.13□□□□□ -0.31
TPM1-213ENST00000558400 MYOM3Q5VTT5 1437 aa13.13□□□□□ -0.31
TPM1-213ENST00000558400 IQSEC2Q5JU85 1478 aa13.12□□□□□ -0.31
TPM1-213ENST00000558400 SETD1BQ9UPS6 1966 aaKnown RBP13.11□□□□□ -0.31
TPM1-213ENST00000558400 LTBP4Q8N2S1 1624 aa13.1□□□□□ -0.31
TPM1-213ENST00000558400 DMRT2Q9Y5R5 561 aa13.09□□□□□ -0.31
TPM1-213ENST00000558400 CAMSAP2Q08AD1 1489 aa13.09□□□□□ -0.31
TPM1-213ENST00000558400 REREQ9P2R6 1566 aa13.08□□□□□ -0.32
TPM1-213ENST00000558400 CCDC141Q6ZP82 1450 aa13.08□□□□□ -0.32
TPM1-213ENST00000558400 AGLP35573 1532 aa13.08□□□□□ -0.32
TPM1-213ENST00000558400 DIP2CQ9Y2E4 1556 aa13.07□□□□□ -0.32
TPM1-213ENST00000558400 DHX29Q7Z478 1369 aaKnown RBP13.07□□□□□ -0.32
TPM1-213ENST00000558400 PTPRTO14522 1441 aa13.06□□□□□ -0.32
TPM1-213ENST00000558400 ATP7AQ04656 1500 aa13.06□□□□□ -0.32
TPM1-213ENST00000558400 KIDINS220Q9ULH0 1771 aa13.06□□□□□ -0.32
TPM1-213ENST00000558400 A2MP01023 1474 aa13.05□□□□□ -0.32
TPM1-213ENST00000558400 MAPK8IP2Q13387 824 aaPredicted RBP13.05□□□□□ -0.32
TPM1-213ENST00000558400 UHRF1BP1Q6BDS2 1440 aa13.05□□□□□ -0.32
TPM1-213ENST00000558400 ARHGEF5Q12774 1597 aa13.04□□□□□ -0.32
TPM1-213ENST00000558400 GGT6Q6P531 493 aa13.04□□□□□ -0.32
TPM1-213ENST00000558400 FGD6Q6ZV73 1430 aa13.04□□□□□ -0.32
TPM1-213ENST00000558400 CNTLNQ9NXG0 1405 aa13.03□□□□□ -0.32
TPM1-213ENST00000558400 ABCA6Q8N139 1617 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms